Wall clock time and date at job start Wed Apr 1 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 O 1.42901 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.35650 * 116.99905 * 180.02562 * 4 3 2 6 6 C 1.39341 * 120.54079 * 0.02562 * 5 4 3 7 7 C 1.38302 * 118.43600 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.44939 * 359.97438 * 7 6 5 9 9 N 1.31375 * 121.06511 * 359.72258 * 8 7 6 10 10 C 1.32859 * 121.69350 * 0.56752 * 9 8 7 11 11 C 1.47836 * 119.78154 * 179.70673 * 10 9 8 12 12 O 1.21556 * 119.99872 * 179.72240 * 11 10 9 13 13 N 1.34770 * 120.00149 * 359.73382 * 11 10 9 14 14 C 1.47028 * 125.64853 * 359.96702 * 13 11 10 15 15 C 1.54323 * 107.27065 * 178.96421 * 14 13 11 16 16 C 1.55278 * 103.00828 * 337.88911 * 15 14 13 17 17 H 1.09005 * 110.95435 * 277.32962 * 16 15 14 18 18 C 1.52995 * 111.09934 * 153.45032 * 16 15 14 19 19 N 1.46503 * 109.47497 * 181.35849 * 18 16 15 20 20 C 1.46503 * 119.99913 * 89.99280 * 19 18 16 21 21 C 1.36936 * 120.00241 * 270.00110 * 19 18 16 22 22 H 1.08006 * 119.99495 * 23.31475 * 21 19 18 23 23 C 1.38807 * 120.00151 * 203.31117 * 21 19 18 24 24 N 1.31614 * 119.99920 * 14.42128 * 23 21 19 25 25 Si 1.86802 * 119.99919 * 194.42100 * 23 21 19 26 26 H 1.48493 * 109.47270 * 60.00253 * 25 23 21 27 27 H 1.48500 * 109.46973 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47004 * 299.99839 * 25 23 21 29 29 C 1.47424 * 125.64934 * 179.97438 * 13 11 10 30 30 H 1.09000 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46936 * 299.99947 * 1 2 3 32 32 H 1.09007 * 109.47035 * 59.99610 * 1 2 3 33 33 H 1.08997 * 109.47081 * 240.00210 * 2 1 3 34 34 H 1.08998 * 109.46762 * 120.00327 * 2 1 3 35 35 H 1.09006 * 109.47143 * 60.00179 * 3 2 1 36 36 H 1.08998 * 109.47540 * 299.99851 * 3 2 1 37 37 H 1.07999 * 120.78274 * 359.97438 * 6 5 4 38 38 H 1.08008 * 120.27621 * 180.02562 * 7 6 5 39 39 H 1.08000 * 119.46926 * 179.97438 * 8 7 6 40 40 H 1.08992 * 109.88185 * 298.38269 * 14 13 11 41 41 H 1.09008 * 109.87766 * 59.54948 * 14 13 11 42 42 H 1.09003 * 110.72000 * 96.17362 * 15 14 13 43 43 H 1.09003 * 110.72089 * 219.27013 * 15 14 13 44 44 H 1.09005 * 109.47376 * 301.35922 * 18 16 15 45 45 H 1.09001 * 109.47488 * 61.35689 * 18 16 15 46 46 H 1.08995 * 109.46746 * 95.19062 * 20 19 18 47 47 H 1.08994 * 109.46959 * 215.19115 * 20 19 18 48 48 H 1.08999 * 109.47396 * 335.19277 * 20 19 18 49 49 H 0.97005 * 119.99902 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.36511 * 322.93976 * 29 13 11 51 51 H 1.09001 * 110.36630 * 85.15869 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0849 2.6511 -0.0001 6 6 3.3370 3.8268 0.0014 7 6 4.0097 5.0352 0.0024 8 6 5.3974 5.0435 0.0023 9 7 6.0820 3.9223 0.0068 10 6 5.4810 2.7374 0.0004 11 6 6.2932 1.5021 -0.0008 12 8 5.7474 0.4160 -0.0015 13 7 7.6386 1.5802 -0.0007 14 6 8.4248 2.8226 -0.0003 15 6 9.9149 2.4219 0.0263 16 6 9.8795 0.9829 0.6087 17 1 9.8257 1.0042 1.6972 18 6 11.0856 0.1681 0.1374 19 7 10.9999 -1.1899 0.6802 20 6 10.3071 -2.2377 -0.0738 21 6 11.5671 -1.4800 1.8923 22 1 11.7371 -0.6921 2.6113 23 6 11.9236 -2.7864 2.1970 24 7 11.9861 -3.6910 1.2430 25 14 12.3146 -3.2607 3.9610 26 1 11.1290 -3.0035 4.8171 27 1 12.6648 -4.7026 4.0198 28 1 13.4617 -2.4530 4.4480 29 6 8.5658 0.4340 -0.0012 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 2.2575 3.7952 0.0019 38 1 3.4596 5.9647 0.0040 39 1 5.9230 5.9870 0.0026 40 1 8.2114 3.3967 -0.9018 41 1 8.1840 3.4133 0.8836 42 1 10.3312 2.4181 -0.9811 43 1 10.4825 3.0899 0.6741 44 1 11.0915 0.1244 -0.9518 45 1 12.0031 0.6418 0.4868 46 1 11.0313 -2.8013 -0.6619 47 1 9.8004 -2.9093 0.6192 48 1 9.5742 -1.7821 -0.7396 49 1 12.2356 -4.6039 1.4559 50 1 8.1704 -0.3740 0.6142 51 1 8.7373 0.0853 -1.0196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691979373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:05 Heat of formation + Delta-G solvation = -26.483833 kcal Electronic energy + Delta-G solvation = -30915.888706 eV Core-core repulsion = 26815.893501 eV Total energy + Delta-G solvation = -4099.995205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.03615 -40.62674 -39.35786 -38.76791 -37.06852 -34.95740 -34.11231 -33.29730 -32.20953 -31.48590 -29.95316 -28.27496 -27.69038 -27.34105 -25.72198 -24.18241 -23.80441 -22.77772 -22.41821 -21.24019 -20.93820 -19.14209 -18.67230 -18.55603 -17.91792 -17.48357 -17.09326 -16.83703 -16.69731 -16.13797 -15.66378 -15.47294 -15.43660 -15.24481 -14.86449 -14.71951 -14.52020 -14.36874 -14.19737 -13.78286 -13.75097 -13.56549 -13.31204 -13.07828 -12.98881 -12.91876 -12.81079 -12.56754 -12.54731 -12.41759 -12.17466 -12.01587 -11.97088 -11.80211 -11.67486 -11.61468 -11.42793 -11.25222 -10.81810 -10.60703 -10.48745 -9.75918 -9.40255 -8.75038 -7.80893 -5.30090 -0.36993 0.22730 1.44209 1.48282 1.54014 1.73444 1.91177 2.05588 2.51326 2.81186 3.11677 3.31594 3.52511 3.58510 3.68205 3.81670 3.86704 3.87658 3.93987 4.03472 4.07867 4.14176 4.21448 4.38988 4.45175 4.47698 4.49242 4.56454 4.68134 4.72084 4.72611 4.85191 4.88496 4.95069 5.01232 5.01946 5.03891 5.09609 5.10477 5.11823 5.22709 5.28244 5.34540 5.41402 5.48061 5.52139 5.63739 5.67925 6.22425 6.34628 6.50839 6.74839 7.13098 7.15990 7.88950 8.33835 9.21996 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.002603 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.771954 B =10755.798237 C =12347.157982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.045 3.955 4 O -0.310 6.310 5 C 0.123 3.877 6 C -0.173 4.173 7 C -0.084 4.084 8 C 0.053 3.947 9 N -0.429 5.429 10 C 0.007 3.993 11 C 0.566 3.434 12 O -0.570 6.570 13 N -0.606 5.606 14 C 0.127 3.873 15 C -0.119 4.119 16 C -0.107 4.107 17 H 0.061 0.939 18 C 0.162 3.838 19 N -0.618 5.618 20 C 0.178 3.822 21 C -0.259 4.259 22 H 0.072 0.928 23 C -0.057 4.057 24 N -0.940 5.940 25 Si 0.966 3.034 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.269 1.269 29 C 0.127 3.873 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.176 0.824 38 H 0.191 0.809 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.007 0.993 47 H 0.005 0.995 48 H 0.026 0.974 49 H 0.247 0.753 50 H 0.037 0.963 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.493 24.592 -5.000 33.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.029 4.029 4 O -0.221 6.221 5 C 0.072 3.928 6 C -0.199 4.199 7 C -0.104 4.104 8 C -0.109 4.109 9 N -0.141 5.141 10 C -0.129 4.129 11 C 0.355 3.645 12 O -0.450 6.450 13 N -0.339 5.339 14 C 0.006 3.994 15 C -0.157 4.157 16 C -0.129 4.129 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.341 5.341 20 C 0.033 3.967 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.252 4.252 24 N -0.587 5.587 25 Si 0.795 3.205 26 H -0.211 1.211 27 H -0.221 1.221 28 H -0.195 1.195 29 C 0.005 3.995 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.219 0.781 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.025 0.975 47 H 0.023 0.977 48 H 0.045 0.955 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.821 23.579 -5.001 32.514 hybrid contribution -0.647 -1.316 0.938 1.740 sum -22.468 22.263 -4.064 31.890 Atomic orbital electron populations 1.21653 0.91727 1.03186 1.03183 1.21499 0.97794 0.94537 1.02594 1.23296 0.76718 0.99814 1.03086 1.86399 1.23167 1.26079 1.86453 1.20270 0.92006 0.86830 0.93739 1.22147 1.02437 0.90754 1.04561 1.22766 0.95435 0.99448 0.92718 1.23532 0.92615 0.96539 0.98210 1.67818 1.40135 0.97402 1.08767 1.20228 0.88951 0.92401 1.11293 1.17996 0.81153 0.88284 0.77037 1.90794 1.71806 1.29916 1.52438 1.48547 1.04415 1.09969 1.70923 1.22154 0.89436 0.84728 1.03127 1.22805 0.95315 0.94663 1.02949 1.22910 0.94279 0.96060 0.99620 0.92070 1.20847 0.95210 0.83932 0.96404 1.44121 1.62825 1.06274 1.20869 1.20513 0.92853 0.89987 0.93329 1.19469 1.33457 0.93640 0.92367 0.91026 1.25802 1.00727 0.97499 1.01156 1.70229 1.53581 1.02821 1.32025 0.85351 0.78157 0.76617 0.80415 1.21123 1.22134 1.19481 1.22098 0.89383 0.88390 0.99674 0.91519 0.91241 0.91086 0.92298 0.92549 0.89941 0.89719 0.80652 0.79201 0.78100 0.89820 0.90514 0.89271 0.87875 0.92931 0.92185 0.97488 0.97652 0.95537 0.94397 0.94482 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.91 71.98 0.71 -0.80 16 2 C -0.13 -2.30 6.30 30.59 0.19 -2.11 16 3 C 0.05 0.78 4.76 71.98 0.34 1.12 16 4 O -0.31 -8.90 8.20 -68.66 -0.56 -9.46 16 5 C 0.12 3.09 6.71 22.93 0.15 3.25 16 6 C -0.17 -2.39 9.13 22.55 0.21 -2.18 16 7 C -0.08 -0.74 10.10 22.41 0.23 -0.51 16 8 C 0.05 0.69 11.17 84.89 0.95 1.63 16 9 N -0.43 -9.72 6.84 -184.63 -1.26 -10.98 16 10 C 0.01 0.21 6.73 41.93 0.28 0.49 16 11 C 0.57 21.84 7.83 86.78 0.68 22.52 16 12 O -0.57 -26.58 15.39 17.10 0.26 -26.32 16 13 N -0.61 -21.52 3.33 -815.24 -2.71 -24.23 16 14 C 0.13 3.34 5.40 86.73 0.47 3.81 16 15 C -0.12 -2.96 6.43 31.83 0.20 -2.76 16 16 C -0.11 -3.79 3.30 -9.37 -0.03 -3.82 16 17 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 18 C 0.16 6.57 5.17 86.38 0.45 7.02 16 19 N -0.62 -32.36 2.84 -726.94 -2.06 -34.42 16 20 C 0.18 9.57 8.61 127.77 1.10 10.67 16 21 C -0.26 -14.76 9.64 84.03 0.81 -13.95 16 22 H 0.07 3.92 7.87 -2.91 -0.02 3.89 16 23 C -0.06 -3.35 5.07 84.86 0.43 -2.92 16 24 N -0.94 -58.43 10.81 21.65 0.23 -58.19 16 25 Si 0.97 47.20 29.58 68.60 2.03 49.23 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 29 C 0.13 5.00 4.95 86.85 0.43 5.43 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.03 7.70 -2.38 -0.02 1.01 16 36 H 0.08 1.02 7.70 -2.39 -0.02 1.00 16 37 H 0.18 1.20 6.46 -2.91 -0.02 1.19 16 38 H 0.19 -0.12 8.06 -2.91 -0.02 -0.15 16 39 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.08 1.96 7.54 -2.39 -0.02 1.94 16 41 H 0.08 1.93 7.40 -2.38 -0.02 1.91 16 42 H 0.09 1.97 8.04 -2.39 -0.02 1.95 16 43 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.98 8.03 -2.38 -0.02 1.96 16 45 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 46 H 0.01 0.40 7.32 -2.39 -0.02 0.38 16 47 H 0.00 0.28 7.40 -2.39 -0.02 0.26 16 48 H 0.03 1.25 6.19 -2.39 -0.01 1.24 16 49 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 50 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 51 H 0.06 2.37 7.19 -2.39 -0.02 2.35 16 Total: -1.00 -83.62 405.88 4.44 -79.18 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.91 Total: 8.31 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 7.61 Total: 26.89 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.81 Total: -127.83 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.30 Total: -35.78 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -83.62 4.44 -79.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691979373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.695 kcal (2) G-P(sol) polarization free energy of solvation -83.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds