Wall clock time and date at job start Wed Apr 1 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 O 1.42903 * 109.47043 * 120.00124 * 2 1 3 5 5 C 1.35426 * 117.00176 * 149.99722 * 4 2 1 6 6 N 1.32236 * 119.80018 * 359.97438 * 5 4 2 7 7 C 1.31878 * 121.80198 * 180.02562 * 6 5 4 8 8 C 1.38357 * 121.18757 * 0.02562 * 7 6 5 9 9 C 1.38343 * 119.45232 * 359.73803 * 8 7 6 10 10 C 1.39981 * 118.34888 * 0.50424 * 9 8 7 11 11 C 1.47532 * 120.59647 * 179.78091 * 10 9 8 12 12 O 1.21587 * 119.99788 * 224.99585 * 11 10 9 13 13 N 1.34776 * 119.99786 * 44.98336 * 11 10 9 14 14 C 1.47025 * 125.65294 * 354.85367 * 13 11 10 15 15 C 1.54368 * 107.28909 * 178.86560 * 14 13 11 16 16 C 1.55150 * 102.92156 * 337.86077 * 15 14 13 17 17 H 1.09001 * 111.00471 * 277.35714 * 16 15 14 18 18 C 1.53005 * 111.00738 * 153.54637 * 16 15 14 19 19 N 1.46495 * 109.47302 * 178.17705 * 18 16 15 20 20 C 1.46503 * 120.00108 * 89.99929 * 19 18 16 21 21 C 1.36942 * 119.99994 * 269.99964 * 19 18 16 22 22 H 1.07995 * 120.00273 * 335.51516 * 21 19 18 23 23 C 1.38818 * 119.99944 * 155.50905 * 21 19 18 24 24 N 1.31614 * 119.99722 * 345.49512 * 23 21 19 25 25 Si 1.86794 * 120.00110 * 165.49326 * 23 21 19 26 26 H 1.48507 * 109.47095 * 59.99885 * 25 23 21 27 27 H 1.48495 * 109.47412 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47242 * 300.00302 * 25 23 21 29 29 C 1.47432 * 125.64523 * 174.79962 * 13 11 10 30 30 H 1.08999 * 109.46733 * 300.00485 * 1 2 3 31 31 H 1.08998 * 109.46945 * 59.99627 * 1 2 3 32 32 H 1.08996 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47130 * 239.99654 * 2 1 3 34 34 H 1.08998 * 109.47091 * 60.00617 * 3 2 1 35 35 H 1.09003 * 109.46825 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47138 * 299.99370 * 3 2 1 37 37 H 1.07999 * 119.40829 * 180.02562 * 7 6 5 38 38 H 1.07991 * 120.27364 * 180.02562 * 8 7 6 39 39 H 1.07997 * 120.82089 * 180.25414 * 9 8 7 40 40 H 1.09003 * 109.87757 * 298.31627 * 14 13 11 41 41 H 1.08995 * 109.88374 * 59.32017 * 14 13 11 42 42 H 1.09000 * 110.75357 * 219.49032 * 15 14 13 43 43 H 1.09003 * 110.70192 * 96.20087 * 15 14 13 44 44 H 1.09004 * 109.46621 * 58.17941 * 18 16 15 45 45 H 1.08998 * 109.46928 * 298.17892 * 18 16 15 46 46 H 1.08995 * 109.46904 * 264.91165 * 20 19 18 47 47 H 1.09006 * 109.46832 * 144.90798 * 20 19 18 48 48 H 1.08998 * 109.46751 * 24.91339 * 20 19 18 49 49 H 0.97008 * 120.00175 * 179.97438 * 24 23 21 50 50 H 1.09001 * 110.35977 * 85.33180 * 29 13 11 51 51 H 1.08994 * 110.46059 * 323.05616 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1965 -1.3119 1.0655 6 7 3.8584 -1.2905 -0.0791 7 6 5.0198 -1.8987 -0.2218 8 6 5.5997 -2.5907 0.8265 9 6 4.9531 -2.6415 2.0485 10 6 3.7190 -1.9930 2.1749 11 6 2.9843 -2.0197 3.4540 12 8 1.7893 -2.2441 3.4640 13 7 3.6377 -1.7955 4.6112 14 6 5.0902 -1.6188 4.7549 15 6 5.3752 -1.3602 6.2498 16 6 4.0108 -0.8452 6.7792 17 1 3.8900 0.2191 6.5772 18 6 3.8562 -1.1378 8.2730 19 7 2.5783 -0.6001 8.7462 20 6 1.3739 -1.4334 8.7084 21 6 2.5095 0.6814 9.2240 22 1 3.3930 1.1569 9.6235 23 6 1.3041 1.3693 9.1947 24 7 0.3070 0.9189 8.4632 25 14 1.0973 2.9341 10.1936 26 1 2.0954 3.9402 9.7498 27 1 -0.2716 3.4731 9.9915 28 1 1.3039 2.6335 11.6331 29 6 3.0141 -1.6857 5.9427 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6769 1.9563 -0.8900 37 1 5.5273 -1.8559 -1.1742 38 1 6.5516 -3.0831 0.6934 39 1 5.3876 -3.1719 2.8828 40 1 5.6073 -2.5213 4.4292 41 1 5.4207 -0.7673 4.1601 42 1 6.1473 -0.6003 6.3700 43 1 5.6602 -2.2842 6.7532 44 1 4.6731 -0.6689 8.8215 45 1 3.8799 -2.2152 8.4364 46 1 0.8207 -1.2309 7.7913 47 1 0.7462 -1.2040 9.5696 48 1 1.6587 -2.4851 8.7363 49 1 -0.5355 1.3993 8.4430 50 1 2.8870 -2.6740 6.3845 51 1 2.0533 -1.1758 5.8725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691999060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:38 Heat of formation + Delta-G solvation = -6.271044 kcal Electronic energy + Delta-G solvation = -31567.149550 eV Core-core repulsion = 27468.030837 eV Total energy + Delta-G solvation = -4099.118713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.08502 -39.48305 -38.32984 -37.32347 -35.28476 -33.38319 -33.11723 -31.94010 -30.71144 -30.25836 -28.66330 -27.36389 -26.35633 -25.53551 -24.68608 -23.73620 -22.75986 -21.30819 -21.08581 -19.83657 -19.60793 -18.49942 -17.24074 -17.06739 -16.59053 -15.97117 -15.73844 -15.45562 -15.39674 -14.71635 -14.54964 -14.17290 -14.06370 -13.82524 -13.57108 -13.35640 -13.24130 -13.09671 -12.68973 -12.50652 -12.43573 -12.37442 -12.27561 -12.18528 -12.05630 -11.72848 -11.36365 -11.08866 -11.04435 -10.90355 -10.72502 -10.67812 -10.49188 -10.22167 -10.14465 -10.06823 -10.00805 -9.88257 -9.73673 -9.49977 -8.68492 -8.50362 -8.31560 -6.69083 -5.67421 -3.15360 0.63134 1.03461 2.79818 2.92221 3.17732 3.41308 3.47293 3.48036 3.61276 4.00799 4.47486 4.51244 4.56559 4.73452 4.78226 4.85369 4.86380 4.88726 5.01707 5.11580 5.16756 5.29964 5.44451 5.46478 5.52377 5.55806 5.60035 5.66327 5.67716 5.72202 5.79240 5.82529 6.02990 6.03415 6.03907 6.08318 6.15123 6.18293 6.27418 6.39973 6.56760 6.67666 6.73072 6.83038 7.03325 7.15927 7.38281 7.55662 7.77963 7.80369 7.84977 8.39840 8.45523 9.27706 9.91492 10.41436 11.36775 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.003095 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.863014 B = 9044.798638 C =10538.398240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.169 4.169 4 O -0.277 6.277 5 C 0.370 3.630 6 N -0.543 5.543 7 C 0.157 3.843 8 C -0.221 4.221 9 C -0.015 4.015 10 C -0.195 4.195 11 C 0.579 3.421 12 O -0.518 6.518 13 N -0.613 5.613 14 C 0.100 3.900 15 C -0.130 4.130 16 C -0.116 4.116 17 H 0.085 0.915 18 C 0.164 3.836 19 N -0.599 5.599 20 C 0.159 3.841 21 C -0.260 4.260 22 H 0.066 0.934 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.123 3.877 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.162 0.838 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.037 0.963 48 H -0.002 1.002 49 H 0.253 0.747 50 H 0.060 0.940 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.318 -6.619 -18.266 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.226 4.226 4 O -0.182 6.182 5 C 0.191 3.809 6 N -0.267 5.267 7 C 0.000 4.000 8 C -0.241 4.241 9 C -0.041 4.041 10 C -0.201 4.201 11 C 0.366 3.634 12 O -0.393 6.393 13 N -0.347 5.347 14 C -0.023 4.023 15 C -0.168 4.168 16 C -0.139 4.139 17 H 0.104 0.896 18 C 0.036 3.964 19 N -0.321 5.321 20 C 0.015 3.985 21 C -0.390 4.390 22 H 0.084 0.916 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.211 1.211 29 C 0.002 3.998 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.017 0.983 49 H 0.063 0.937 50 H 0.079 0.921 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.808 -6.195 -18.797 22.550 hybrid contribution 0.328 0.596 0.807 1.055 sum 11.136 -5.600 -17.989 21.886 Atomic orbital electron populations 1.21900 0.92580 1.03290 1.03080 1.22428 0.94935 0.92691 0.87572 1.22229 1.01860 0.95662 1.02887 1.86488 1.30455 1.62970 1.38281 1.19717 0.85589 0.87553 0.88066 1.67381 1.10921 1.24609 1.23827 1.22595 0.89136 0.89481 0.98794 1.21889 1.03060 1.05177 0.93996 1.21771 0.90794 0.93374 0.98122 1.19963 0.98098 1.07070 0.94977 1.17379 0.86379 0.77642 0.82007 1.90831 1.14229 1.47871 1.86389 1.48521 1.08069 1.70759 1.07357 1.22169 0.81429 1.00224 0.98515 1.22724 0.99190 1.01774 0.93159 1.23236 0.91307 1.00387 0.98927 0.89645 1.20781 0.89892 0.96165 0.89605 1.43938 1.03903 1.11977 1.72312 1.20832 0.88295 0.88422 1.00981 1.19103 0.95940 0.90242 1.33715 0.91591 1.25041 0.97619 0.97847 0.98836 1.70051 1.04154 1.40422 1.39840 0.86397 0.76865 0.83366 0.80240 1.21008 1.21698 1.21117 1.22320 0.98327 0.99552 0.79582 0.91212 0.90567 0.91655 0.89371 0.91629 0.92171 0.91026 0.82065 0.84014 0.83491 0.91999 0.91911 0.90364 0.90781 0.93272 0.94269 0.94766 0.94433 0.98313 0.93676 0.92146 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.56 37.16 0.36 -1.34 16 2 C 0.08 1.01 3.11 -26.73 -0.08 0.92 16 3 C -0.17 -1.89 9.53 37.16 0.35 -1.54 16 4 O -0.28 -4.57 8.71 -30.19 -0.26 -4.83 16 5 C 0.37 5.57 7.45 -16.61 -0.12 5.45 16 6 N -0.54 -6.70 8.64 -12.98 -0.11 -6.81 16 7 C 0.16 1.40 11.17 -17.49 -0.20 1.20 16 8 C -0.22 -1.78 10.09 -39.50 -0.40 -2.18 16 9 C -0.02 -0.16 8.66 -38.89 -0.34 -0.49 16 10 C -0.19 -2.88 5.48 -104.69 -0.57 -3.45 16 11 C 0.58 10.59 7.20 -12.47 -0.09 10.50 16 12 O -0.52 -11.64 16.69 -6.94 -0.12 -11.76 16 13 N -0.61 -10.27 3.33 -171.72 -0.57 -10.84 16 14 C 0.10 1.24 5.57 -3.04 -0.02 1.22 16 15 C -0.13 -1.65 6.42 -24.88 -0.16 -1.81 16 16 C -0.12 -2.07 3.27 -88.47 -0.29 -2.36 16 17 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 18 C 0.16 3.18 5.21 -4.04 -0.02 3.16 16 19 N -0.60 -14.80 2.86 -181.11 -0.52 -15.32 16 20 C 0.16 3.95 8.31 59.85 0.50 4.45 16 21 C -0.26 -7.09 9.63 -15.05 -0.14 -7.24 16 22 H 0.07 1.75 7.87 -52.49 -0.41 1.34 16 23 C 0.01 0.16 5.07 -17.43 -0.09 0.07 16 24 N -0.90 -26.64 10.89 55.49 0.60 -26.04 16 25 Si 0.90 22.01 29.58 -169.99 -5.03 16.98 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 29 C 0.12 2.35 5.56 -2.53 -0.01 2.34 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.04 6.98 -51.93 -0.36 0.68 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.15 1.24 5.75 -52.49 -0.30 0.93 16 40 H 0.06 0.59 5.91 -51.93 -0.31 0.28 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 44 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 45 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 46 H 0.03 0.93 6.86 -51.93 -0.36 0.58 16 47 H 0.04 0.99 7.48 -51.93 -0.39 0.61 16 48 H 0.00 -0.04 7.83 -51.93 -0.41 -0.44 16 49 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 51 H 0.09 2.05 7.64 -51.93 -0.40 1.66 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -34.49 409.13 -9.54 -44.02 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.37 Total: -0.47 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.33 Total: 8.90 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.60 Total: -59.01 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.38 Total: -16.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.49 -9.54 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691999060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.752 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds