Wall clock time and date at job start Wed Apr 1 2020 04:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 O 1.42903 * 109.47043 * 120.00124 * 2 1 3 5 5 C 1.35426 * 117.00176 * 149.99722 * 4 2 1 6 6 N 1.32236 * 119.80018 * 359.97438 * 5 4 2 7 7 C 1.31878 * 121.80198 * 180.02562 * 6 5 4 8 8 C 1.38357 * 121.18757 * 0.02562 * 7 6 5 9 9 C 1.38343 * 119.45232 * 359.73803 * 8 7 6 10 10 C 1.39981 * 118.34888 * 0.50424 * 9 8 7 11 11 C 1.47532 * 120.59647 * 179.78091 * 10 9 8 12 12 O 1.21587 * 119.99788 * 224.99585 * 11 10 9 13 13 N 1.34776 * 119.99786 * 44.98336 * 11 10 9 14 14 C 1.47025 * 125.65294 * 354.85367 * 13 11 10 15 15 C 1.54368 * 107.28909 * 178.86560 * 14 13 11 16 16 C 1.55150 * 102.92156 * 337.86077 * 15 14 13 17 17 H 1.09001 * 111.00471 * 277.35714 * 16 15 14 18 18 C 1.53005 * 111.00738 * 153.54637 * 16 15 14 19 19 N 1.46495 * 109.47302 * 178.17705 * 18 16 15 20 20 C 1.46503 * 120.00108 * 89.99929 * 19 18 16 21 21 C 1.36942 * 119.99994 * 269.99964 * 19 18 16 22 22 H 1.07995 * 120.00273 * 335.51516 * 21 19 18 23 23 C 1.38818 * 119.99944 * 155.50905 * 21 19 18 24 24 N 1.31614 * 119.99722 * 345.49512 * 23 21 19 25 25 Si 1.86794 * 120.00110 * 165.49326 * 23 21 19 26 26 H 1.48507 * 109.47095 * 59.99885 * 25 23 21 27 27 H 1.48495 * 109.47412 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47242 * 300.00302 * 25 23 21 29 29 C 1.47432 * 125.64523 * 174.79962 * 13 11 10 30 30 H 1.08999 * 109.46733 * 300.00485 * 1 2 3 31 31 H 1.08998 * 109.46945 * 59.99627 * 1 2 3 32 32 H 1.08996 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47130 * 239.99654 * 2 1 3 34 34 H 1.08998 * 109.47091 * 60.00617 * 3 2 1 35 35 H 1.09003 * 109.46825 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47138 * 299.99370 * 3 2 1 37 37 H 1.07999 * 119.40829 * 180.02562 * 7 6 5 38 38 H 1.07991 * 120.27364 * 180.02562 * 8 7 6 39 39 H 1.07997 * 120.82089 * 180.25414 * 9 8 7 40 40 H 1.09003 * 109.87757 * 298.31627 * 14 13 11 41 41 H 1.08995 * 109.88374 * 59.32017 * 14 13 11 42 42 H 1.09000 * 110.75357 * 219.49032 * 15 14 13 43 43 H 1.09003 * 110.70192 * 96.20087 * 15 14 13 44 44 H 1.09004 * 109.46621 * 58.17941 * 18 16 15 45 45 H 1.08998 * 109.46928 * 298.17892 * 18 16 15 46 46 H 1.08995 * 109.46904 * 264.91165 * 20 19 18 47 47 H 1.09006 * 109.46832 * 144.90798 * 20 19 18 48 48 H 1.08998 * 109.46751 * 24.91339 * 20 19 18 49 49 H 0.97008 * 120.00175 * 179.97438 * 24 23 21 50 50 H 1.09001 * 110.35977 * 85.33180 * 29 13 11 51 51 H 1.08994 * 110.46059 * 323.05616 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1965 -1.3119 1.0655 6 7 3.8584 -1.2905 -0.0791 7 6 5.0198 -1.8987 -0.2218 8 6 5.5997 -2.5907 0.8265 9 6 4.9531 -2.6415 2.0485 10 6 3.7190 -1.9930 2.1749 11 6 2.9843 -2.0197 3.4540 12 8 1.7893 -2.2441 3.4640 13 7 3.6377 -1.7955 4.6112 14 6 5.0902 -1.6188 4.7549 15 6 5.3752 -1.3602 6.2498 16 6 4.0108 -0.8452 6.7792 17 1 3.8900 0.2191 6.5772 18 6 3.8562 -1.1378 8.2730 19 7 2.5783 -0.6001 8.7462 20 6 1.3739 -1.4334 8.7084 21 6 2.5095 0.6814 9.2240 22 1 3.3930 1.1569 9.6235 23 6 1.3041 1.3693 9.1947 24 7 0.3070 0.9189 8.4632 25 14 1.0973 2.9341 10.1936 26 1 2.0954 3.9402 9.7498 27 1 -0.2716 3.4731 9.9915 28 1 1.3039 2.6335 11.6331 29 6 3.0141 -1.6857 5.9427 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6769 1.9563 -0.8900 37 1 5.5273 -1.8559 -1.1742 38 1 6.5516 -3.0831 0.6934 39 1 5.3876 -3.1719 2.8828 40 1 5.6073 -2.5213 4.4292 41 1 5.4207 -0.7673 4.1601 42 1 6.1473 -0.6003 6.3700 43 1 5.6602 -2.2842 6.7532 44 1 4.6731 -0.6689 8.8215 45 1 3.8799 -2.2152 8.4364 46 1 0.8207 -1.2309 7.7913 47 1 0.7462 -1.2040 9.5696 48 1 1.6587 -2.4851 8.7363 49 1 -0.5355 1.3993 8.4430 50 1 2.8870 -2.6740 6.3845 51 1 2.0533 -1.1758 5.8725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691999060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:37 Heat of formation + Delta-G solvation = -29.477666 kcal Electronic energy + Delta-G solvation = -31568.155864 eV Core-core repulsion = 27468.030837 eV Total energy + Delta-G solvation = -4100.125027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.07486 -40.75136 -39.28256 -38.79746 -37.09630 -34.36258 -34.28758 -33.44994 -32.25158 -31.26420 -30.03867 -28.28942 -28.17637 -27.33581 -25.79311 -24.78746 -23.93498 -22.85176 -22.19735 -21.20847 -20.93257 -19.46149 -18.66871 -18.43982 -18.05827 -17.09518 -17.02994 -16.69456 -16.55599 -16.18929 -15.74651 -15.49019 -15.43540 -15.01806 -14.97907 -14.53136 -14.49856 -14.35674 -14.09784 -13.84208 -13.77198 -13.40606 -13.32761 -13.27975 -13.14693 -13.09310 -12.94665 -12.82866 -12.55957 -12.44547 -12.16356 -12.01393 -11.96928 -11.84905 -11.79424 -11.57141 -11.42938 -11.27755 -10.99552 -10.63802 -10.57805 -9.75378 -9.50744 -8.75608 -7.81317 -5.31265 -0.24511 0.22578 1.44304 1.47030 1.53743 1.56322 1.95523 1.96972 2.51429 2.71619 3.16162 3.31265 3.44860 3.63169 3.72551 3.77028 3.85266 3.92092 3.94174 3.95636 4.11615 4.16230 4.18050 4.30400 4.48205 4.51680 4.57752 4.64704 4.69645 4.72872 4.74096 4.78888 4.82365 4.85000 4.92727 4.93135 5.02094 5.05145 5.08771 5.12500 5.14620 5.26781 5.29134 5.32746 5.47565 5.51347 5.65817 5.71453 6.23341 6.34600 6.46756 6.74322 7.04626 7.15545 7.89396 8.33917 9.21361 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.003095 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.863014 B = 9044.798638 C =10538.398240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.161 4.161 4 O -0.318 6.318 5 C 0.344 3.656 6 N -0.553 5.553 7 C 0.158 3.842 8 C -0.197 4.197 9 C -0.009 4.009 10 C -0.227 4.227 11 C 0.571 3.429 12 O -0.582 6.582 13 N -0.614 5.614 14 C 0.095 3.905 15 C -0.112 4.112 16 C -0.110 4.110 17 H 0.045 0.955 18 C 0.160 3.840 19 N -0.616 5.616 20 C 0.177 3.823 21 C -0.261 4.261 22 H 0.076 0.924 23 C -0.056 4.056 24 N -0.939 5.939 25 Si 0.966 3.034 26 H -0.274 1.274 27 H -0.301 1.301 28 H -0.275 1.275 29 C 0.132 3.868 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.205 0.795 38 H 0.191 0.809 39 H 0.172 0.828 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.065 0.935 46 H -0.003 1.003 47 H 0.010 0.990 48 H 0.032 0.968 49 H 0.244 0.756 50 H 0.065 0.935 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.433 -7.671 -19.717 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 C -0.218 4.218 4 O -0.225 6.225 5 C 0.165 3.835 6 N -0.277 5.277 7 C 0.002 3.998 8 C -0.217 4.217 9 C -0.034 4.034 10 C -0.233 4.233 11 C 0.361 3.639 12 O -0.462 6.462 13 N -0.347 5.347 14 C -0.026 4.026 15 C -0.150 4.150 16 C -0.132 4.132 17 H 0.064 0.936 18 C 0.034 3.966 19 N -0.338 5.338 20 C 0.032 3.968 21 C -0.392 4.392 22 H 0.094 0.906 23 C -0.251 4.251 24 N -0.585 5.585 25 Si 0.794 3.206 26 H -0.200 1.200 27 H -0.227 1.227 28 H -0.201 1.201 29 C 0.009 3.991 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.222 0.778 38 H 0.208 0.792 39 H 0.189 0.811 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.015 0.985 47 H 0.029 0.971 48 H 0.050 0.950 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 16.024 -7.250 -20.241 26.815 hybrid contribution -1.125 0.842 1.163 1.824 sum 14.899 -6.408 -19.078 25.041 Atomic orbital electron populations 1.21934 0.92242 1.02804 1.03617 1.22641 0.95322 0.93182 0.87030 1.22176 1.01416 0.94961 1.03256 1.86448 1.31926 1.63890 1.40206 1.19929 0.85727 0.88631 0.89198 1.67445 1.12296 1.25475 1.22493 1.23500 0.87786 0.87665 1.00892 1.22406 1.03950 1.03229 0.92070 1.22093 0.88939 0.92238 1.00158 1.19857 1.00206 1.10234 0.92993 1.18110 0.85985 0.76315 0.83510 1.90777 1.17161 1.50836 1.87423 1.48616 1.10058 1.69943 1.06057 1.22513 0.78624 1.02740 0.98698 1.22727 0.95942 1.03520 0.92855 1.22933 0.94685 0.97845 0.97735 0.93641 1.21022 0.87681 0.97573 0.90337 1.44194 1.05395 1.11407 1.72834 1.20506 0.88223 0.90207 0.97907 1.19525 0.96019 0.91085 1.32552 0.90622 1.25849 0.97665 1.01242 1.00310 1.70270 1.04376 1.41940 1.41945 0.85364 0.76256 0.79912 0.79065 1.19959 1.22727 1.20090 1.22012 0.96246 0.99090 0.81756 0.93333 0.87224 0.92654 0.88520 0.93615 0.92679 0.88156 0.77792 0.79153 0.81107 0.87598 0.91152 0.87961 0.87862 0.91668 0.91692 0.98476 0.97128 0.94992 0.94699 0.91711 0.95956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.56 71.98 0.69 -2.92 16 2 C 0.07 1.96 3.11 30.59 0.10 2.05 16 3 C -0.16 -3.72 9.53 71.98 0.69 -3.03 16 4 O -0.32 -11.37 8.71 -75.53 -0.66 -12.03 16 5 C 0.34 10.57 7.45 85.13 0.63 11.21 16 6 N -0.55 -12.80 8.64 -308.00 -2.66 -15.46 16 7 C 0.16 2.15 11.17 84.71 0.95 3.09 16 8 C -0.20 -2.11 10.09 22.32 0.23 -1.88 16 9 C -0.01 -0.16 8.66 22.72 0.20 0.04 16 10 C -0.23 -6.69 5.48 -19.91 -0.11 -6.80 16 11 C 0.57 22.09 7.20 86.69 0.62 22.72 16 12 O -0.58 -28.84 16.69 7.70 0.13 -28.71 16 13 N -0.61 -20.96 3.33 -815.45 -2.71 -23.68 16 14 C 0.10 2.08 5.57 86.74 0.48 2.56 16 15 C -0.11 -2.43 6.42 31.80 0.20 -2.23 16 16 C -0.11 -3.90 3.27 -9.40 -0.03 -3.93 16 17 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 18 C 0.16 6.04 5.21 86.38 0.45 6.49 16 19 N -0.62 -31.07 2.86 -726.92 -2.08 -33.15 16 20 C 0.18 9.20 8.31 127.77 1.06 10.26 16 21 C -0.26 -14.51 9.63 84.03 0.81 -13.70 16 22 H 0.08 3.98 7.87 -2.91 -0.02 3.96 16 23 C -0.06 -3.23 5.07 84.86 0.43 -2.80 16 24 N -0.94 -59.04 10.89 21.65 0.24 -58.80 16 25 Si 0.97 46.55 29.58 68.60 2.03 48.58 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 28 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 29 C 0.13 5.29 5.56 86.85 0.48 5.77 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 2.32 6.98 -2.38 -0.02 2.30 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.21 0.94 8.06 -2.91 -0.02 0.91 16 38 H 0.19 0.27 8.06 -2.92 -0.02 0.25 16 39 H 0.17 2.00 5.75 -2.91 -0.02 1.99 16 40 H 0.11 1.44 5.91 -2.39 -0.01 1.42 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.10 1.73 8.04 -2.39 -0.02 1.71 16 44 H 0.07 2.27 8.04 -2.38 -0.02 2.25 16 45 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 46 H 0.00 -0.18 6.86 -2.39 -0.02 -0.20 16 47 H 0.01 0.56 7.48 -2.38 -0.02 0.55 16 48 H 0.03 1.40 7.83 -2.39 -0.02 1.38 16 49 H 0.24 15.12 8.31 -92.70 -0.77 14.34 16 50 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 51 H 0.02 1.16 7.64 -2.39 -0.02 1.14 16 Total: -1.00 -87.02 409.13 3.07 -83.95 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.91 Total: 12.40 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 7.88 Total: 26.90 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -7.22 Total: -131.09 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.53 Total: -40.75 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -87.02 3.07 -83.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691999060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.469 kcal (2) G-P(sol) polarization free energy of solvation -87.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds