Wall clock time and date at job start Wed Apr 1 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47201 * 2 1 4 4 O 1.42895 * 109.47046 * 120.00584 * 2 1 3 5 5 C 1.35682 * 117.00212 * 89.99795 * 4 2 1 6 6 C 1.38896 * 119.62333 * 180.27651 * 5 4 2 7 7 C 1.39576 * 118.94332 * 180.22487 * 6 5 4 8 8 C 1.48166 * 120.89104 * 179.77418 * 7 6 5 9 9 O 1.21510 * 119.99989 * 359.72690 * 8 7 6 10 10 N 1.34776 * 119.99794 * 179.71884 * 8 7 6 11 11 C 1.46508 * 119.99324 * 174.92699 * 10 8 7 12 12 C 1.52998 * 110.01827 * 65.06063 * 11 10 8 13 13 N 1.46496 * 109.47206 * 55.01258 * 12 11 10 14 14 C 1.36938 * 120.00241 * 174.90682 * 13 12 11 15 15 H 1.08000 * 119.99545 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00391 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99851 * 359.72513 * 16 14 13 18 18 Si 1.86799 * 119.99818 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47448 * 90.00111 * 18 16 14 20 20 H 1.48510 * 109.46700 * 209.99751 * 18 16 14 21 21 H 1.48495 * 109.47208 * 329.99475 * 18 16 14 22 22 C 1.54272 * 110.06734 * 186.47528 * 11 10 8 23 23 C 1.54889 * 104.19565 * 95.69712 * 22 11 10 24 24 C 1.54895 * 102.74882 * 37.93970 * 23 22 11 25 25 C 1.53875 * 110.03150 * 303.66311 * 11 10 8 26 26 C 1.39965 * 118.22091 * 359.50969 * 7 6 5 27 27 C 1.37980 * 119.12980 * 0.24539 * 26 7 6 28 28 N 1.31907 * 120.98010 * 0.02562 * 27 26 7 29 29 H 1.08995 * 109.47268 * 59.99018 * 1 2 3 30 30 H 1.08992 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46877 * 299.99514 * 1 2 3 32 32 H 1.09007 * 109.46376 * 240.00330 * 2 1 3 33 33 H 1.09004 * 109.46564 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47000 * 300.00219 * 3 2 1 35 35 H 1.09002 * 109.46490 * 60.00833 * 3 2 1 36 36 H 1.07996 * 120.52963 * 0.02562 * 6 5 4 37 37 H 0.96990 * 120.00761 * 354.92866 * 10 8 7 38 38 H 1.08999 * 109.47014 * 295.01527 * 12 11 10 39 39 H 1.08996 * 109.47048 * 175.01681 * 12 11 10 40 40 H 0.97002 * 120.00403 * 354.91122 * 13 12 11 41 41 H 0.97004 * 119.99902 * 180.02562 * 17 16 14 42 42 H 1.08997 * 110.48083 * 214.37454 * 22 11 10 43 43 H 1.08998 * 110.48770 * 337.01876 * 22 11 10 44 44 H 1.09002 * 110.75684 * 279.62855 * 23 22 11 45 45 H 1.09001 * 110.75369 * 156.25479 * 23 22 11 46 46 H 1.08996 * 110.48898 * 203.37719 * 24 23 22 47 47 H 1.09003 * 110.48292 * 80.73415 * 24 23 22 48 48 H 1.08989 * 110.03333 * 359.95809 * 25 11 10 49 49 H 1.09006 * 110.02801 * 121.38951 * 25 11 10 50 50 H 1.07997 * 120.43868 * 180.27639 * 26 7 6 51 51 H 1.08004 * 119.51086 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 -2.0111 1.0651 6 6 2.6686 -2.7213 2.1678 7 6 2.8794 -4.0956 2.0461 8 6 3.3709 -4.8943 3.1932 9 8 3.6007 -4.3529 4.2565 10 7 3.5628 -6.2214 3.0573 11 6 4.1531 -6.9922 4.1546 12 6 3.2157 -6.9843 5.3637 13 7 1.8948 -7.4730 4.9607 14 6 0.9156 -7.6541 5.9007 15 1 1.1171 -7.4362 6.9391 16 6 -0.3360 -8.1176 5.5189 17 7 -0.5831 -8.3779 4.2527 18 14 -1.6718 -8.3638 6.8012 19 1 -2.4550 -7.1107 6.9471 20 1 -2.5729 -9.4636 6.3723 21 1 -1.0495 -8.7132 8.1035 22 6 4.4175 -8.4426 3.7003 23 6 5.9037 -8.4391 3.2641 24 6 6.5646 -7.5067 4.3097 25 6 5.5183 -6.3971 4.5419 26 6 2.6088 -4.7001 0.8131 27 6 2.1521 -3.9218 -0.2307 28 7 1.9696 -2.6240 -0.0807 29 1 -0.3633 0.5140 -0.8898 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 2.8608 -2.2175 3.1036 37 1 3.3103 -6.6662 2.2332 38 1 3.1257 -5.9679 5.7470 39 1 3.6208 -7.6315 6.1416 40 1 1.7137 -7.6684 4.0280 41 1 -1.4578 -8.7015 3.9859 42 1 4.2643 -9.1353 4.5277 43 1 3.7739 -8.7024 2.8598 44 1 6.0106 -8.0299 2.2595 45 1 6.3251 -9.4428 3.3205 46 1 7.4878 -7.0836 3.9140 47 1 6.7581 -8.0484 5.2355 48 1 5.7419 -5.5355 3.9132 49 1 5.5129 -6.1028 5.5915 50 1 2.7551 -5.7619 0.6805 51 1 1.9418 -4.3818 -1.1850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698634737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:22 Heat of formation + Delta-G solvation = -31.993273 kcal Electronic energy + Delta-G solvation = -31263.954102 eV Core-core repulsion = 27163.719990 eV Total energy + Delta-G solvation = -4100.234112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93541 -39.99453 -38.38344 -37.34940 -34.30876 -33.61902 -33.28969 -32.44737 -30.95438 -30.13796 -28.65439 -28.05696 -27.47054 -25.02716 -24.36188 -23.39203 -22.24845 -22.03282 -20.76035 -20.36773 -19.07460 -18.60663 -17.21923 -17.08136 -16.44678 -15.82683 -15.81426 -15.66179 -15.07556 -14.71472 -14.63470 -14.41433 -14.37532 -13.98196 -13.89660 -13.63041 -13.27090 -13.17277 -12.96695 -12.70637 -12.53580 -12.52776 -12.11806 -12.02986 -11.86800 -11.61153 -11.17846 -11.13359 -10.98137 -10.95276 -10.90980 -10.80981 -10.70132 -10.48643 -10.42694 -10.02747 -9.96417 -9.88122 -9.67105 -9.46357 -8.79658 -8.62344 -8.58109 -6.83487 -5.72695 -2.98760 0.74611 1.10056 2.79560 3.09429 3.40388 3.46708 3.52082 3.53073 3.87743 4.16422 4.57073 4.62843 4.66543 4.74484 4.77080 4.82657 4.90939 4.98122 4.99471 5.06017 5.09213 5.32292 5.49048 5.52267 5.54577 5.58466 5.60953 5.64631 5.64809 5.67153 5.74687 5.77879 5.88033 5.89906 5.95796 6.00490 6.01665 6.05107 6.19027 6.28101 6.28267 6.37164 6.48606 6.51975 6.58452 6.90680 7.09606 7.17646 7.71416 7.75046 7.79592 8.46913 8.47956 9.58531 10.16478 10.52349 11.50558 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.003334 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.211191 B = 8395.349838 C =10628.030240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.300 6.300 5 C 0.319 3.681 6 C -0.134 4.134 7 C -0.042 4.042 8 C 0.563 3.437 9 O -0.518 6.518 10 N -0.699 5.699 11 C 0.169 3.831 12 C 0.144 3.856 13 N -0.726 5.726 14 C -0.231 4.231 15 H 0.068 0.932 16 C -0.016 4.016 17 N -0.936 5.936 18 Si 0.905 3.095 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.179 4.179 27 C 0.136 3.864 28 N -0.530 5.530 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.153 0.847 37 H 0.397 0.603 38 H 0.038 0.962 39 H 0.028 0.972 40 H 0.381 0.619 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.677 10.310 -12.714 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.208 6.208 5 C 0.141 3.859 6 C -0.156 4.156 7 C -0.053 4.053 8 C 0.348 3.652 9 O -0.394 6.394 10 N -0.351 5.351 11 C 0.084 3.916 12 C 0.016 3.984 13 N -0.370 5.370 14 C -0.362 4.362 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.585 5.585 18 Si 0.736 3.264 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.200 4.200 27 C -0.019 4.019 28 N -0.255 5.255 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.170 0.830 37 H 0.233 0.767 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.215 0.785 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.159 0.841 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.515 11.368 -12.229 20.282 hybrid contribution -1.049 -0.968 0.435 1.492 sum 10.466 10.400 -11.794 18.889 Atomic orbital electron populations 1.22224 0.94856 1.03103 1.02530 1.22338 0.94457 0.92699 0.87979 1.21910 1.01937 0.93975 1.02957 1.86315 1.80137 1.15737 1.38578 1.19602 0.92079 0.84777 0.89488 1.21118 1.02283 0.92930 0.99254 1.20263 0.97345 0.93414 0.94285 1.17882 0.77982 0.82330 0.86972 1.90760 1.50310 1.71313 1.27043 1.45922 1.63318 1.07202 1.18639 1.21314 0.92639 0.90194 0.87460 1.21170 0.86248 0.98157 0.92805 1.42197 1.07579 1.79270 1.07970 1.19233 0.91262 1.35774 0.89947 0.91362 1.24673 0.97644 1.02641 0.96147 1.69640 1.22253 1.52286 1.14345 0.86209 0.82150 0.77300 0.80699 1.21869 1.21875 1.20828 1.22593 0.95636 0.95092 1.02184 1.22541 0.95710 0.99405 0.98636 1.22386 0.97815 0.96820 0.99170 1.22419 0.92892 0.97821 1.02520 1.22163 1.02846 1.01688 0.93281 1.22315 0.93277 0.87469 0.98857 1.67096 1.20713 1.12982 1.24687 0.91188 0.91831 0.91918 0.89282 0.91855 0.90564 0.91576 0.82975 0.76747 0.94412 0.95460 0.78525 0.93736 0.89448 0.90952 0.91811 0.91586 0.92024 0.91514 0.91500 0.90764 0.84072 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.53 37.16 0.35 -1.31 16 2 C 0.08 0.85 3.11 -26.73 -0.08 0.77 16 3 C -0.15 -1.19 9.56 37.16 0.36 -0.84 16 4 O -0.30 -4.03 9.76 -18.75 -0.18 -4.21 16 5 C 0.32 4.56 7.45 -17.16 -0.13 4.43 16 6 C -0.13 -2.05 9.61 -38.84 -0.37 -2.42 16 7 C -0.04 -0.64 5.91 -104.67 -0.62 -1.26 16 8 C 0.56 9.72 6.84 -12.18 -0.08 9.64 16 9 O -0.52 -10.53 13.71 5.36 0.07 -10.46 16 10 N -0.70 -10.85 4.45 -47.40 -0.21 -11.06 16 11 C 0.17 2.74 0.57 -130.69 -0.07 2.66 16 12 C 0.14 3.05 4.64 -4.04 -0.02 3.03 16 13 N -0.73 -18.35 5.28 -59.91 -0.32 -18.66 16 14 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 17 N -0.94 -28.12 13.06 55.49 0.72 -27.40 16 18 Si 0.90 22.94 29.55 -169.99 -5.02 17.91 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.12 -1.66 5.75 -25.07 -0.14 -1.80 16 23 C -0.13 -1.39 6.91 -24.74 -0.17 -1.56 16 24 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 25 C -0.12 -1.69 5.22 -25.61 -0.13 -1.83 16 26 C -0.18 -2.18 9.61 -39.03 -0.37 -2.55 16 27 C 0.14 1.54 11.17 -17.61 -0.20 1.35 16 28 N -0.53 -6.93 8.61 -13.38 -0.12 -7.05 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.94 6.98 -51.92 -0.36 0.58 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.15 2.38 7.74 -52.49 -0.41 1.97 16 37 H 0.40 5.26 6.39 -40.82 -0.26 5.00 16 38 H 0.04 0.90 6.55 -51.93 -0.34 0.56 16 39 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 40 H 0.38 9.83 7.19 -40.82 -0.29 9.53 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.36 7.78 -51.93 -0.40 0.96 16 43 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.99 7.00 -51.94 -0.36 0.63 16 49 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 50 H 0.14 1.37 6.54 -52.49 -0.34 1.03 16 51 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -33.79 409.13 -9.18 -42.96 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.19 Total: 12.38 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.11 Total: -0.58 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.08 Total: -64.17 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.11 Total: -14.67 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.79 -9.18 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698634737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.971 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds