Wall clock time and date at job start Wed Apr 1 2020 04:46:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53003 * 109.47201 * 2 1
4 4 O 1.42895 * 109.47046 * 120.00584 * 2 1 3
5 5 C 1.35682 * 117.00212 * 89.99795 * 4 2 1
6 6 C 1.38896 * 119.62333 * 180.27651 * 5 4 2
7 7 C 1.39576 * 118.94332 * 180.22487 * 6 5 4
8 8 C 1.48166 * 120.89104 * 179.77418 * 7 6 5
9 9 O 1.21510 * 119.99989 * 359.72690 * 8 7 6
10 10 N 1.34776 * 119.99794 * 179.71884 * 8 7 6
11 11 C 1.46508 * 119.99324 * 174.92699 * 10 8 7
12 12 C 1.52998 * 110.01827 * 65.06063 * 11 10 8
13 13 N 1.46496 * 109.47206 * 55.01258 * 12 11 10
14 14 C 1.36938 * 120.00241 * 174.90682 * 13 12 11
15 15 H 1.08000 * 119.99545 * 0.02562 * 14 13 12
16 16 C 1.38813 * 120.00391 * 180.02562 * 14 13 12
17 17 N 1.31613 * 119.99851 * 359.72513 * 16 14 13
18 18 Si 1.86799 * 119.99818 * 180.02562 * 16 14 13
19 19 H 1.48499 * 109.47448 * 90.00111 * 18 16 14
20 20 H 1.48510 * 109.46700 * 209.99751 * 18 16 14
21 21 H 1.48495 * 109.47208 * 329.99475 * 18 16 14
22 22 C 1.54272 * 110.06734 * 186.47528 * 11 10 8
23 23 C 1.54889 * 104.19565 * 95.69712 * 22 11 10
24 24 C 1.54895 * 102.74882 * 37.93970 * 23 22 11
25 25 C 1.53875 * 110.03150 * 303.66311 * 11 10 8
26 26 C 1.39965 * 118.22091 * 359.50969 * 7 6 5
27 27 C 1.37980 * 119.12980 * 0.24539 * 26 7 6
28 28 N 1.31907 * 120.98010 * 0.02562 * 27 26 7
29 29 H 1.08995 * 109.47268 * 59.99018 * 1 2 3
30 30 H 1.08992 * 109.47458 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.46877 * 299.99514 * 1 2 3
32 32 H 1.09007 * 109.46376 * 240.00330 * 2 1 3
33 33 H 1.09004 * 109.46564 * 180.02562 * 3 2 1
34 34 H 1.08997 * 109.47000 * 300.00219 * 3 2 1
35 35 H 1.09002 * 109.46490 * 60.00833 * 3 2 1
36 36 H 1.07996 * 120.52963 * 0.02562 * 6 5 4
37 37 H 0.96990 * 120.00761 * 354.92866 * 10 8 7
38 38 H 1.08999 * 109.47014 * 295.01527 * 12 11 10
39 39 H 1.08996 * 109.47048 * 175.01681 * 12 11 10
40 40 H 0.97002 * 120.00403 * 354.91122 * 13 12 11
41 41 H 0.97004 * 119.99902 * 180.02562 * 17 16 14
42 42 H 1.08997 * 110.48083 * 214.37454 * 22 11 10
43 43 H 1.08998 * 110.48770 * 337.01876 * 22 11 10
44 44 H 1.09002 * 110.75684 * 279.62855 * 23 22 11
45 45 H 1.09001 * 110.75369 * 156.25479 * 23 22 11
46 46 H 1.08996 * 110.48898 * 203.37719 * 24 23 22
47 47 H 1.09003 * 110.48292 * 80.73415 * 24 23 22
48 48 H 1.08989 * 110.03333 * 359.95809 * 25 11 10
49 49 H 1.09006 * 110.02801 * 121.38951 * 25 11 10
50 50 H 1.07997 * 120.43868 * 180.27639 * 26 7 6
51 51 H 1.08004 * 119.51086 * 179.97438 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.2116 -2.0111 1.0651
6 6 2.6686 -2.7213 2.1678
7 6 2.8794 -4.0956 2.0461
8 6 3.3709 -4.8943 3.1932
9 8 3.6007 -4.3529 4.2565
10 7 3.5628 -6.2214 3.0573
11 6 4.1531 -6.9922 4.1546
12 6 3.2157 -6.9843 5.3637
13 7 1.8948 -7.4730 4.9607
14 6 0.9156 -7.6541 5.9007
15 1 1.1171 -7.4362 6.9391
16 6 -0.3360 -8.1176 5.5189
17 7 -0.5831 -8.3779 4.2527
18 14 -1.6718 -8.3638 6.8012
19 1 -2.4550 -7.1107 6.9471
20 1 -2.5729 -9.4636 6.3723
21 1 -1.0495 -8.7132 8.1035
22 6 4.4175 -8.4426 3.7003
23 6 5.9037 -8.4391 3.2641
24 6 6.5646 -7.5067 4.3097
25 6 5.5183 -6.3971 4.5419
26 6 2.6088 -4.7001 0.8131
27 6 2.1521 -3.9218 -0.2307
28 7 1.9696 -2.6240 -0.0807
29 1 -0.3633 0.5140 -0.8898
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 1.8932 -0.5138 -0.8901
33 1 3.1301 1.4424 -0.0005
34 1 1.6767 1.9563 -0.8899
35 1 1.6768 1.9562 0.8901
36 1 2.8608 -2.2175 3.1036
37 1 3.3103 -6.6662 2.2332
38 1 3.1257 -5.9679 5.7470
39 1 3.6208 -7.6315 6.1416
40 1 1.7137 -7.6684 4.0280
41 1 -1.4578 -8.7015 3.9859
42 1 4.2643 -9.1353 4.5277
43 1 3.7739 -8.7024 2.8598
44 1 6.0106 -8.0299 2.2595
45 1 6.3251 -9.4428 3.3205
46 1 7.4878 -7.0836 3.9140
47 1 6.7581 -8.0484 5.2355
48 1 5.7419 -5.5355 3.9132
49 1 5.5129 -6.1028 5.5915
50 1 2.7551 -5.7619 0.6805
51 1 1.9418 -4.3818 -1.1850
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001698634737.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:21
Heat of formation + Delta-G solvation = -54.946114 kcal
Electronic energy + Delta-G solvation = -31264.949412 eV
Core-core repulsion = 27163.719990 eV
Total energy + Delta-G solvation = -4101.229422 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.05336 -41.21513 -39.42669 -38.59335 -36.18016 -34.85536 -34.24114 -33.67543
-32.84982 -31.18177 -29.81912 -29.52708 -28.18086 -26.54198 -25.81452 -24.42119
-24.02212 -23.07950 -21.82393 -21.39535 -20.43405 -19.73056 -19.16158 -18.27090
-17.61436 -17.09413 -16.80226 -16.76416 -16.52181 -16.22369 -15.83337 -15.74707
-15.38351 -15.35167 -15.01315 -14.88391 -14.82312 -14.56904 -14.15853 -14.04432
-13.56709 -13.31167 -13.22161 -13.20309 -13.02733 -12.88162 -12.83671 -12.70134
-12.27426 -12.18792 -11.99162 -11.94732 -11.89752 -11.79541 -11.78607 -11.73574
-11.39019 -11.24519 -11.03236 -10.91055 -10.61110 -10.02215 -9.59387 -8.96077
-7.96220 -5.22153 -0.39345 0.07729 1.43428 1.45449 1.53266 1.76161
1.85241 2.21825 2.54138 2.76603 3.22484 3.35436 3.45863 3.58506
3.71440 3.85870 3.88399 3.93265 3.98026 4.01899 4.05076 4.18068
4.26655 4.39960 4.52234 4.55934 4.57935 4.67858 4.68994 4.71501
4.81051 4.82631 4.83034 4.85953 4.87886 4.93115 4.99326 5.10201
5.10859 5.18241 5.20955 5.24999 5.26834 5.33578 5.37110 5.46522
5.51392 5.66662 6.20984 6.26562 6.51226 6.70355 7.17369 7.34287
8.08042 8.37281 9.26583
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008416 B = 0.003334 C = 0.002634
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3326.211191 B = 8395.349838 C =10628.030240
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.073 3.927
3 C -0.146 4.146
4 O -0.316 6.316
5 C 0.313 3.687
6 C -0.158 4.158
7 C -0.059 4.059
8 C 0.557 3.443
9 O -0.560 6.560
10 N -0.689 5.689
11 C 0.172 3.828
12 C 0.146 3.854
13 N -0.729 5.729
14 C -0.245 4.245
15 H 0.063 0.937
16 C -0.067 4.067
17 N -0.960 5.960
18 Si 0.966 3.034
19 H -0.294 1.294
20 H -0.289 1.289
21 H -0.273 1.273
22 C -0.115 4.115
23 C -0.112 4.112
24 C -0.117 4.117
25 C -0.113 4.113
26 C -0.172 4.172
27 C 0.144 3.856
28 N -0.530 5.530
29 H 0.095 0.905
30 H 0.043 0.957
31 H 0.058 0.942
32 H 0.089 0.911
33 H 0.061 0.939
34 H 0.102 0.898
35 H 0.063 0.937
36 H 0.134 0.866
37 H 0.409 0.591
38 H 0.007 0.993
39 H 0.026 0.974
40 H 0.378 0.622
41 H 0.251 0.749
42 H 0.070 0.930
43 H 0.075 0.925
44 H 0.080 0.920
45 H 0.086 0.914
46 H 0.082 0.918
47 H 0.071 0.929
48 H 0.061 0.939
49 H 0.056 0.944
50 H 0.169 0.831
51 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.268 9.576 -14.972 21.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.018 3.982
3 C -0.203 4.203
4 O -0.224 6.224
5 C 0.135 3.865
6 C -0.180 4.180
7 C -0.070 4.070
8 C 0.344 3.656
9 O -0.439 6.439
10 N -0.341 5.341
11 C 0.087 3.913
12 C 0.018 3.982
13 N -0.372 5.372
14 C -0.377 4.377
15 H 0.081 0.919
16 C -0.260 4.260
17 N -0.611 5.611
18 Si 0.796 3.204
19 H -0.221 1.221
20 H -0.215 1.215
21 H -0.198 1.198
22 C -0.153 4.153
23 C -0.150 4.150
24 C -0.155 4.155
25 C -0.152 4.152
26 C -0.192 4.192
27 C -0.011 4.011
28 N -0.254 5.254
29 H 0.114 0.886
30 H 0.062 0.938
31 H 0.077 0.923
32 H 0.107 0.893
33 H 0.080 0.920
34 H 0.120 0.880
35 H 0.082 0.918
36 H 0.152 0.848
37 H 0.247 0.753
38 H 0.025 0.975
39 H 0.044 0.956
40 H 0.211 0.789
41 H 0.060 0.940
42 H 0.089 0.911
43 H 0.093 0.907
44 H 0.099 0.901
45 H 0.104 0.896
46 H 0.101 0.899
47 H 0.090 0.910
48 H 0.079 0.921
49 H 0.075 0.925
50 H 0.187 0.813
51 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges 12.131 10.633 -14.495 21.687
hybrid contribution -1.253 -0.688 1.131 1.823
sum 10.878 9.945 -13.364 19.895
Atomic orbital electron populations
1.22210 0.94426 1.02086 1.03607 1.22643 0.94884 0.93740 0.86953
1.21927 1.01892 0.92370 1.04095 1.86305 1.80234 1.15526 1.40327
1.19601 0.92158 0.85220 0.89505 1.21062 1.04156 0.93494 0.99284
1.20192 0.98728 0.93220 0.94814 1.18312 0.77344 0.82830 0.87123
1.90733 1.52184 1.72154 1.28815 1.45848 1.62693 1.06695 1.18865
1.21259 0.92110 0.92141 0.85836 1.21209 0.85736 0.95849 0.95357
1.42250 1.08526 1.79125 1.07315 1.19531 0.92376 1.35445 0.90394
0.91918 1.25400 0.99558 1.02966 0.98101 1.69761 1.22532 1.53056
1.15726 0.85247 0.79396 0.76878 0.78890 1.22119 1.21481 1.19800
1.22551 0.98339 0.92697 1.01663 1.22507 0.92790 1.00540 0.99113
1.22379 0.97528 0.95722 0.99854 1.22354 0.92858 0.98775 1.01253
1.22483 1.01645 1.03095 0.92015 1.23070 0.91205 0.86739 1.00112
1.67223 1.20485 1.13885 1.23856 0.88607 0.93814 0.92334 0.89274
0.91954 0.87977 0.91823 0.84824 0.75272 0.97525 0.95564 0.78918
0.93982 0.91095 0.90651 0.90123 0.89567 0.89894 0.91040 0.92052
0.92548 0.81334 0.77550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.12 9.53 71.98 0.69 -2.43 16
2 C 0.07 1.48 3.11 30.60 0.10 1.58 16
3 C -0.15 -2.13 9.56 71.98 0.69 -1.44 16
4 O -0.32 -8.71 9.76 -90.00 -0.88 -9.59 16
5 C 0.31 9.11 7.45 84.80 0.63 9.74 16
6 C -0.16 -5.11 9.61 22.75 0.22 -4.89 16
7 C -0.06 -1.81 5.91 -19.90 -0.12 -1.93 16
8 C 0.56 19.95 6.84 86.88 0.59 20.54 16
9 O -0.56 -24.29 13.71 -3.75 -0.05 -24.34 16
10 N -0.69 -21.40 4.45 -422.16 -1.88 -23.28 16
11 C 0.17 5.60 0.57 4.33 0.00 5.61 16
12 C 0.15 6.42 4.64 86.38 0.40 6.82 16
13 N -0.73 -37.75 5.28 -343.47 -1.81 -39.56 16
14 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16
15 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16
16 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16
17 N -0.96 -57.91 13.06 21.65 0.28 -57.63 16
18 Si 0.97 47.45 29.55 68.60 2.03 49.47 16
19 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16
20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16
21 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16
22 C -0.11 -3.10 5.75 31.67 0.18 -2.92 16
23 C -0.11 -2.15 6.91 31.89 0.22 -1.93 16
24 C -0.12 -2.43 6.83 31.67 0.22 -2.22 16
25 C -0.11 -3.26 5.22 31.32 0.16 -3.10 16
26 C -0.17 -3.90 9.61 22.63 0.22 -3.68 16
27 C 0.14 2.91 11.17 84.62 0.94 3.86 16
28 N -0.53 -13.25 8.61 -309.14 -2.66 -15.91 16
29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
32 H 0.09 1.78 6.98 -2.38 -0.02 1.77 16
33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16
34 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16
35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
36 H 0.13 4.66 7.74 -2.91 -0.02 4.64 16
37 H 0.41 10.37 6.39 -92.72 -0.59 9.77 16
38 H 0.01 0.35 6.55 -2.39 -0.02 0.33 16
39 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16
40 H 0.38 19.78 7.19 -92.71 -0.67 19.12 16
41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16
42 H 0.07 2.17 7.78 -2.39 -0.02 2.15 16
43 H 0.07 1.99 7.70 -2.39 -0.02 1.97 16
44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16
47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
48 H 0.06 1.83 7.00 -2.39 -0.02 1.82 16
49 H 0.06 1.80 7.67 -2.38 -0.02 1.78 16
50 H 0.17 2.79 6.54 -2.91 -0.02 2.77 16
51 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16
Total: -1.00 -75.74 409.13 1.17 -74.57
By element:
Atomic # 1 Polarization: 39.88 SS G_CDS: -0.31 Total: 39.56 kcal
Atomic # 6 Polarization: 0.25 SS G_CDS: 6.45 Total: 6.70 kcal
Atomic # 7 Polarization: -130.31 SS G_CDS: -6.07 Total: -136.38 kcal
Atomic # 8 Polarization: -33.00 SS G_CDS: -0.93 Total: -33.93 kcal
Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal
Total: -75.74 1.17 -74.57 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698634737.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.625 kcal
(2) G-P(sol) polarization free energy of solvation -75.738 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds