Wall clock time and date at job start Wed Apr 1 2020 04:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47201 * 2 1 4 4 O 1.42895 * 109.47046 * 120.00584 * 2 1 3 5 5 C 1.35682 * 117.00212 * 89.99795 * 4 2 1 6 6 C 1.38896 * 119.62333 * 180.27651 * 5 4 2 7 7 C 1.39576 * 118.94332 * 180.22487 * 6 5 4 8 8 C 1.48166 * 120.89104 * 179.77418 * 7 6 5 9 9 O 1.21510 * 119.99989 * 359.72690 * 8 7 6 10 10 N 1.34776 * 119.99794 * 179.71884 * 8 7 6 11 11 C 1.46508 * 119.99324 * 174.92699 * 10 8 7 12 12 C 1.52998 * 110.01827 * 65.06063 * 11 10 8 13 13 N 1.46496 * 109.47206 * 55.01258 * 12 11 10 14 14 C 1.36938 * 120.00241 * 174.90682 * 13 12 11 15 15 H 1.08000 * 119.99545 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00391 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99851 * 359.72513 * 16 14 13 18 18 Si 1.86799 * 119.99818 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47448 * 90.00111 * 18 16 14 20 20 H 1.48510 * 109.46700 * 209.99751 * 18 16 14 21 21 H 1.48495 * 109.47208 * 329.99475 * 18 16 14 22 22 C 1.54272 * 110.06734 * 186.47528 * 11 10 8 23 23 C 1.54889 * 104.19565 * 95.69712 * 22 11 10 24 24 C 1.54895 * 102.74882 * 37.93970 * 23 22 11 25 25 C 1.53875 * 110.03150 * 303.66311 * 11 10 8 26 26 C 1.39965 * 118.22091 * 359.50969 * 7 6 5 27 27 C 1.37980 * 119.12980 * 0.24539 * 26 7 6 28 28 N 1.31907 * 120.98010 * 0.02562 * 27 26 7 29 29 H 1.08995 * 109.47268 * 59.99018 * 1 2 3 30 30 H 1.08992 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46877 * 299.99514 * 1 2 3 32 32 H 1.09007 * 109.46376 * 240.00330 * 2 1 3 33 33 H 1.09004 * 109.46564 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47000 * 300.00219 * 3 2 1 35 35 H 1.09002 * 109.46490 * 60.00833 * 3 2 1 36 36 H 1.07996 * 120.52963 * 0.02562 * 6 5 4 37 37 H 0.96990 * 120.00761 * 354.92866 * 10 8 7 38 38 H 1.08999 * 109.47014 * 295.01527 * 12 11 10 39 39 H 1.08996 * 109.47048 * 175.01681 * 12 11 10 40 40 H 0.97002 * 120.00403 * 354.91122 * 13 12 11 41 41 H 0.97004 * 119.99902 * 180.02562 * 17 16 14 42 42 H 1.08997 * 110.48083 * 214.37454 * 22 11 10 43 43 H 1.08998 * 110.48770 * 337.01876 * 22 11 10 44 44 H 1.09002 * 110.75684 * 279.62855 * 23 22 11 45 45 H 1.09001 * 110.75369 * 156.25479 * 23 22 11 46 46 H 1.08996 * 110.48898 * 203.37719 * 24 23 22 47 47 H 1.09003 * 110.48292 * 80.73415 * 24 23 22 48 48 H 1.08989 * 110.03333 * 359.95809 * 25 11 10 49 49 H 1.09006 * 110.02801 * 121.38951 * 25 11 10 50 50 H 1.07997 * 120.43868 * 180.27639 * 26 7 6 51 51 H 1.08004 * 119.51086 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 -2.0111 1.0651 6 6 2.6686 -2.7213 2.1678 7 6 2.8794 -4.0956 2.0461 8 6 3.3709 -4.8943 3.1932 9 8 3.6007 -4.3529 4.2565 10 7 3.5628 -6.2214 3.0573 11 6 4.1531 -6.9922 4.1546 12 6 3.2157 -6.9843 5.3637 13 7 1.8948 -7.4730 4.9607 14 6 0.9156 -7.6541 5.9007 15 1 1.1171 -7.4362 6.9391 16 6 -0.3360 -8.1176 5.5189 17 7 -0.5831 -8.3779 4.2527 18 14 -1.6718 -8.3638 6.8012 19 1 -2.4550 -7.1107 6.9471 20 1 -2.5729 -9.4636 6.3723 21 1 -1.0495 -8.7132 8.1035 22 6 4.4175 -8.4426 3.7003 23 6 5.9037 -8.4391 3.2641 24 6 6.5646 -7.5067 4.3097 25 6 5.5183 -6.3971 4.5419 26 6 2.6088 -4.7001 0.8131 27 6 2.1521 -3.9218 -0.2307 28 7 1.9696 -2.6240 -0.0807 29 1 -0.3633 0.5140 -0.8898 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 2.8608 -2.2175 3.1036 37 1 3.3103 -6.6662 2.2332 38 1 3.1257 -5.9679 5.7470 39 1 3.6208 -7.6315 6.1416 40 1 1.7137 -7.6684 4.0280 41 1 -1.4578 -8.7015 3.9859 42 1 4.2643 -9.1353 4.5277 43 1 3.7739 -8.7024 2.8598 44 1 6.0106 -8.0299 2.2595 45 1 6.3251 -9.4428 3.3205 46 1 7.4878 -7.0836 3.9140 47 1 6.7581 -8.0484 5.2355 48 1 5.7419 -5.5355 3.9132 49 1 5.5129 -6.1028 5.5915 50 1 2.7551 -5.7619 0.6805 51 1 1.9418 -4.3818 -1.1850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698634737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:21 Heat of formation + Delta-G solvation = -54.946114 kcal Electronic energy + Delta-G solvation = -31264.949412 eV Core-core repulsion = 27163.719990 eV Total energy + Delta-G solvation = -4101.229422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05336 -41.21513 -39.42669 -38.59335 -36.18016 -34.85536 -34.24114 -33.67543 -32.84982 -31.18177 -29.81912 -29.52708 -28.18086 -26.54198 -25.81452 -24.42119 -24.02212 -23.07950 -21.82393 -21.39535 -20.43405 -19.73056 -19.16158 -18.27090 -17.61436 -17.09413 -16.80226 -16.76416 -16.52181 -16.22369 -15.83337 -15.74707 -15.38351 -15.35167 -15.01315 -14.88391 -14.82312 -14.56904 -14.15853 -14.04432 -13.56709 -13.31167 -13.22161 -13.20309 -13.02733 -12.88162 -12.83671 -12.70134 -12.27426 -12.18792 -11.99162 -11.94732 -11.89752 -11.79541 -11.78607 -11.73574 -11.39019 -11.24519 -11.03236 -10.91055 -10.61110 -10.02215 -9.59387 -8.96077 -7.96220 -5.22153 -0.39345 0.07729 1.43428 1.45449 1.53266 1.76161 1.85241 2.21825 2.54138 2.76603 3.22484 3.35436 3.45863 3.58506 3.71440 3.85870 3.88399 3.93265 3.98026 4.01899 4.05076 4.18068 4.26655 4.39960 4.52234 4.55934 4.57935 4.67858 4.68994 4.71501 4.81051 4.82631 4.83034 4.85953 4.87886 4.93115 4.99326 5.10201 5.10859 5.18241 5.20955 5.24999 5.26834 5.33578 5.37110 5.46522 5.51392 5.66662 6.20984 6.26562 6.51226 6.70355 7.17369 7.34287 8.08042 8.37281 9.26583 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.003334 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.211191 B = 8395.349838 C =10628.030240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 C -0.146 4.146 4 O -0.316 6.316 5 C 0.313 3.687 6 C -0.158 4.158 7 C -0.059 4.059 8 C 0.557 3.443 9 O -0.560 6.560 10 N -0.689 5.689 11 C 0.172 3.828 12 C 0.146 3.854 13 N -0.729 5.729 14 C -0.245 4.245 15 H 0.063 0.937 16 C -0.067 4.067 17 N -0.960 5.960 18 Si 0.966 3.034 19 H -0.294 1.294 20 H -0.289 1.289 21 H -0.273 1.273 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.172 4.172 27 C 0.144 3.856 28 N -0.530 5.530 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.409 0.591 38 H 0.007 0.993 39 H 0.026 0.974 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.169 0.831 51 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.268 9.576 -14.972 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 C -0.203 4.203 4 O -0.224 6.224 5 C 0.135 3.865 6 C -0.180 4.180 7 C -0.070 4.070 8 C 0.344 3.656 9 O -0.439 6.439 10 N -0.341 5.341 11 C 0.087 3.913 12 C 0.018 3.982 13 N -0.372 5.372 14 C -0.377 4.377 15 H 0.081 0.919 16 C -0.260 4.260 17 N -0.611 5.611 18 Si 0.796 3.204 19 H -0.221 1.221 20 H -0.215 1.215 21 H -0.198 1.198 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.192 4.192 27 C -0.011 4.011 28 N -0.254 5.254 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.152 0.848 37 H 0.247 0.753 38 H 0.025 0.975 39 H 0.044 0.956 40 H 0.211 0.789 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.187 0.813 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 12.131 10.633 -14.495 21.687 hybrid contribution -1.253 -0.688 1.131 1.823 sum 10.878 9.945 -13.364 19.895 Atomic orbital electron populations 1.22210 0.94426 1.02086 1.03607 1.22643 0.94884 0.93740 0.86953 1.21927 1.01892 0.92370 1.04095 1.86305 1.80234 1.15526 1.40327 1.19601 0.92158 0.85220 0.89505 1.21062 1.04156 0.93494 0.99284 1.20192 0.98728 0.93220 0.94814 1.18312 0.77344 0.82830 0.87123 1.90733 1.52184 1.72154 1.28815 1.45848 1.62693 1.06695 1.18865 1.21259 0.92110 0.92141 0.85836 1.21209 0.85736 0.95849 0.95357 1.42250 1.08526 1.79125 1.07315 1.19531 0.92376 1.35445 0.90394 0.91918 1.25400 0.99558 1.02966 0.98101 1.69761 1.22532 1.53056 1.15726 0.85247 0.79396 0.76878 0.78890 1.22119 1.21481 1.19800 1.22551 0.98339 0.92697 1.01663 1.22507 0.92790 1.00540 0.99113 1.22379 0.97528 0.95722 0.99854 1.22354 0.92858 0.98775 1.01253 1.22483 1.01645 1.03095 0.92015 1.23070 0.91205 0.86739 1.00112 1.67223 1.20485 1.13885 1.23856 0.88607 0.93814 0.92334 0.89274 0.91954 0.87977 0.91823 0.84824 0.75272 0.97525 0.95564 0.78918 0.93982 0.91095 0.90651 0.90123 0.89567 0.89894 0.91040 0.92052 0.92548 0.81334 0.77550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.53 71.98 0.69 -2.43 16 2 C 0.07 1.48 3.11 30.60 0.10 1.58 16 3 C -0.15 -2.13 9.56 71.98 0.69 -1.44 16 4 O -0.32 -8.71 9.76 -90.00 -0.88 -9.59 16 5 C 0.31 9.11 7.45 84.80 0.63 9.74 16 6 C -0.16 -5.11 9.61 22.75 0.22 -4.89 16 7 C -0.06 -1.81 5.91 -19.90 -0.12 -1.93 16 8 C 0.56 19.95 6.84 86.88 0.59 20.54 16 9 O -0.56 -24.29 13.71 -3.75 -0.05 -24.34 16 10 N -0.69 -21.40 4.45 -422.16 -1.88 -23.28 16 11 C 0.17 5.60 0.57 4.33 0.00 5.61 16 12 C 0.15 6.42 4.64 86.38 0.40 6.82 16 13 N -0.73 -37.75 5.28 -343.47 -1.81 -39.56 16 14 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 15 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16 16 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 17 N -0.96 -57.91 13.06 21.65 0.28 -57.63 16 18 Si 0.97 47.45 29.55 68.60 2.03 49.47 16 19 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 22 C -0.11 -3.10 5.75 31.67 0.18 -2.92 16 23 C -0.11 -2.15 6.91 31.89 0.22 -1.93 16 24 C -0.12 -2.43 6.83 31.67 0.22 -2.22 16 25 C -0.11 -3.26 5.22 31.32 0.16 -3.10 16 26 C -0.17 -3.90 9.61 22.63 0.22 -3.68 16 27 C 0.14 2.91 11.17 84.62 0.94 3.86 16 28 N -0.53 -13.25 8.61 -309.14 -2.66 -15.91 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.09 1.78 6.98 -2.38 -0.02 1.77 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.13 4.66 7.74 -2.91 -0.02 4.64 16 37 H 0.41 10.37 6.39 -92.72 -0.59 9.77 16 38 H 0.01 0.35 6.55 -2.39 -0.02 0.33 16 39 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 40 H 0.38 19.78 7.19 -92.71 -0.67 19.12 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.07 2.17 7.78 -2.39 -0.02 2.15 16 43 H 0.07 1.99 7.70 -2.39 -0.02 1.97 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.06 1.83 7.00 -2.39 -0.02 1.82 16 49 H 0.06 1.80 7.67 -2.38 -0.02 1.78 16 50 H 0.17 2.79 6.54 -2.91 -0.02 2.77 16 51 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -75.74 409.13 1.17 -74.57 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.31 Total: 39.56 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 6.45 Total: 6.70 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -6.07 Total: -136.38 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.93 Total: -33.93 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -75.74 1.17 -74.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698634737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.625 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds