Wall clock time and date at job start Wed Apr 1 2020 04:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47338 * 2 1 4 4 O 1.42896 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.35653 * 117.00055 * 179.97438 * 4 3 2 6 6 C 1.39343 * 120.53697 * 359.72327 * 5 4 3 7 7 C 1.38306 * 118.43545 * 180.29575 * 6 5 4 8 8 C 1.38759 * 119.44634 * 359.95410 * 7 6 5 9 9 N 1.31377 * 121.06918 * 0.04499 * 8 7 6 10 10 C 1.32860 * 121.69259 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78032 * 179.97438 * 10 9 8 12 12 O 1.21552 * 119.99818 * 180.02562 * 11 10 9 13 13 N 1.34769 * 120.00324 * 0.02562 * 11 10 9 14 14 C 1.47026 * 125.64673 * 0.02818 * 13 11 10 15 15 C 1.54325 * 107.26990 * 178.90285 * 14 13 11 16 16 C 1.55156 * 102.94357 * 337.80501 * 15 14 13 17 17 H 1.08998 * 111.00465 * 277.39083 * 16 15 14 18 18 C 1.52995 * 111.00158 * 153.57521 * 16 15 14 19 19 H 1.09001 * 109.47514 * 300.70255 * 18 16 15 20 20 C 1.53002 * 109.46992 * 180.70480 * 18 16 15 21 21 N 1.46497 * 109.47287 * 60.70748 * 18 16 15 22 22 C 1.36938 * 120.00203 * 205.00015 * 21 18 16 23 23 H 1.07993 * 119.99988 * 359.97438 * 22 21 18 24 24 C 1.38813 * 120.00267 * 179.97438 * 22 21 18 25 25 N 1.31619 * 119.99639 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00208 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46826 * 90.00148 * 26 24 22 28 28 H 1.48503 * 109.47410 * 209.99728 * 26 24 22 29 29 H 1.48501 * 109.47316 * 330.00130 * 26 24 22 30 30 C 1.47425 * 125.65200 * 179.71937 * 13 11 10 31 31 H 1.08997 * 109.47333 * 300.00501 * 1 2 3 32 32 H 1.09002 * 109.46494 * 60.00478 * 1 2 3 33 33 H 1.08996 * 109.46973 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47927 * 239.99948 * 2 1 3 35 35 H 1.09006 * 109.46981 * 119.99495 * 2 1 3 36 36 H 1.09008 * 109.46870 * 59.99282 * 3 2 1 37 37 H 1.08997 * 109.46771 * 299.99977 * 3 2 1 38 38 H 1.07997 * 120.78387 * 0.27320 * 6 5 4 39 39 H 1.08006 * 120.27594 * 179.97438 * 7 6 5 40 40 H 1.07999 * 119.46653 * 180.02562 * 8 7 6 41 41 H 1.08996 * 109.88407 * 298.31852 * 14 13 11 42 42 H 1.09003 * 109.88414 * 59.33284 * 14 13 11 43 43 H 1.08994 * 110.71987 * 96.17524 * 15 14 13 44 44 H 1.09004 * 110.71781 * 219.43869 * 15 14 13 45 45 H 1.08999 * 109.47337 * 185.27039 * 20 18 16 46 46 H 1.09005 * 109.47369 * 305.26981 * 20 18 16 47 47 H 1.08996 * 109.47505 * 65.27275 * 20 18 16 48 48 H 0.97004 * 119.99860 * 24.99516 * 21 18 16 49 49 H 0.97008 * 120.00069 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.36213 * 323.00349 * 30 13 11 51 51 H 1.08995 * 110.37086 * 85.32464 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0849 2.6512 0.0001 6 6 3.3370 3.8269 -0.0067 7 6 4.0096 5.0353 -0.0131 8 6 5.3972 5.0437 -0.0117 9 7 6.0820 3.9225 -0.0052 10 6 5.4810 2.7376 0.0008 11 6 6.2932 1.5024 0.0074 12 8 5.7475 0.4162 0.0125 13 7 7.6386 1.5805 0.0079 14 6 8.4248 2.8229 0.0029 15 6 9.9148 2.4223 0.0338 16 6 9.8770 0.9886 0.6256 17 1 9.8204 1.0164 1.7138 18 6 11.0855 0.1724 0.1629 19 1 11.0883 0.1122 -0.9254 20 6 11.0042 -1.2376 0.7514 21 7 12.3170 0.8216 0.6193 22 6 13.4907 0.6144 -0.0550 23 1 13.5086 -0.0280 -0.9230 24 6 14.6574 1.2300 0.3770 25 7 14.6354 2.0132 1.4346 26 14 16.2585 0.9467 -0.5424 27 1 16.4062 1.9719 -1.6066 28 1 17.3979 1.0487 0.4046 29 1 16.2445 -0.4054 -1.1562 30 6 8.5659 0.4344 0.0201 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8935 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 2.2575 3.7952 -0.0073 39 1 3.4595 5.9647 -0.0189 40 1 5.9228 5.9871 -0.0163 41 1 8.2127 3.3921 -0.9021 42 1 8.1806 3.4197 0.8818 43 1 10.3327 2.4132 -0.9728 44 1 10.4808 3.0921 0.6813 45 1 11.9098 -1.7893 0.4995 46 1 10.9071 -1.1740 1.8353 47 1 10.1376 -1.7542 0.3387 48 1 12.3009 1.3983 1.3991 49 1 15.4507 2.4437 1.7363 50 1 8.1693 -0.3677 0.6426 51 1 8.7407 0.0771 -0.9947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699944819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:39 Heat of formation + Delta-G solvation = -22.895089 kcal Electronic energy + Delta-G solvation = -30565.795670 eV Core-core repulsion = 26465.956084 eV Total energy + Delta-G solvation = -4099.839586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20145 -39.53104 -38.59051 -37.51398 -35.09809 -34.36187 -32.89850 -32.16195 -30.89614 -30.18253 -29.10707 -27.43565 -27.06137 -25.34019 -24.09202 -23.34628 -22.68910 -21.76220 -21.26516 -19.90583 -19.52027 -18.39558 -17.62455 -17.15808 -16.91549 -16.75693 -15.94832 -15.69986 -15.23372 -14.94098 -14.67553 -14.51542 -14.17947 -13.95682 -13.69024 -13.42363 -13.28309 -13.12427 -13.03541 -12.59094 -12.54909 -12.37935 -12.31397 -12.26508 -12.01445 -11.92742 -11.57958 -11.40497 -11.10933 -11.08242 -10.84193 -10.61274 -10.48609 -10.39303 -10.19137 -10.12290 -10.06520 -9.74052 -9.59831 -9.55914 -8.86395 -8.79891 -8.32209 -6.90582 -5.72126 -2.99931 0.41267 0.90125 2.68934 2.74824 3.05403 3.46323 3.51927 3.53183 3.67141 4.00192 4.20766 4.30155 4.43582 4.48275 4.60000 4.62730 4.73986 4.77286 4.94724 4.95217 5.00415 5.08038 5.18905 5.22002 5.30174 5.52014 5.56201 5.59901 5.60076 5.64826 5.65480 5.75882 5.79518 5.92154 5.97834 6.03011 6.12389 6.17215 6.24433 6.36615 6.43904 6.55822 6.57703 6.73440 6.76250 6.90424 6.95438 7.18201 7.48220 7.70553 7.75107 8.30359 8.46621 9.57947 10.16122 10.51358 11.50564 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.002127 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.148727 B =13160.909083 C =14359.360026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.271 6.271 5 C 0.139 3.861 6 C -0.179 4.179 7 C -0.108 4.108 8 C 0.055 3.945 9 N -0.411 5.411 10 C 0.050 3.950 11 C 0.581 3.419 12 O -0.524 6.524 13 N -0.599 5.599 14 C 0.117 3.883 15 C -0.120 4.120 16 C -0.103 4.103 17 H 0.079 0.921 18 C 0.185 3.815 19 H 0.049 0.951 20 C -0.167 4.167 21 N -0.721 5.721 22 C -0.233 4.233 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 C 0.115 3.885 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.166 0.834 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.076 0.924 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.775 5.305 -2.696 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.181 6.181 5 C 0.088 3.912 6 C -0.205 4.205 7 C -0.129 4.129 8 C -0.106 4.106 9 N -0.123 5.123 10 C -0.089 4.089 11 C 0.368 3.632 12 O -0.400 6.400 13 N -0.331 5.331 14 C -0.006 4.006 15 C -0.158 4.158 16 C -0.123 4.123 17 H 0.097 0.903 18 C 0.075 3.925 19 H 0.067 0.933 20 C -0.228 4.228 21 N -0.363 5.363 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 C -0.007 4.007 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.183 0.817 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.017 4.424 -2.815 29.487 hybrid contribution -0.171 0.465 -0.154 0.518 sum -29.187 4.889 -2.970 29.743 Atomic orbital electron populations 1.21694 0.94256 1.02661 1.01992 1.21459 0.95703 0.94465 1.04420 1.23037 0.78666 0.99605 1.01202 1.86415 1.20765 1.24648 1.86239 1.19991 0.92196 0.85689 0.93313 1.21733 1.00977 0.91857 1.05960 1.22211 0.95850 0.98342 0.96451 1.22794 0.91344 0.96653 0.99805 1.67966 1.39196 0.97330 1.07773 1.20678 0.88383 0.93002 1.06878 1.17223 0.80759 0.87271 0.77992 1.90824 1.70927 1.27668 1.50545 1.48342 1.04276 1.09486 1.71028 1.22184 0.90426 0.85677 1.02302 1.22659 0.93705 0.96727 1.02696 1.22625 0.93786 0.95518 1.00323 0.90263 1.20129 0.85376 0.90214 0.96789 0.93315 1.22488 1.00198 0.99399 1.00669 1.42360 1.03121 1.56239 1.34532 1.19223 0.86286 1.23137 1.07809 0.91257 1.24712 0.97801 1.00244 0.98305 1.69661 1.27296 1.35153 1.26068 0.86223 0.83828 0.77622 0.78723 1.21839 1.21906 1.20861 1.22280 0.88527 0.88685 1.01219 0.92455 0.92462 0.91588 0.90474 0.90456 0.91959 0.91966 0.83816 0.84033 0.81703 0.91229 0.91031 0.90465 0.89667 0.92622 0.93617 0.94395 0.78286 0.93633 0.90559 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.91 6.30 -26.73 -0.17 -1.07 16 3 C 0.05 0.40 4.76 37.16 0.18 0.57 16 4 O -0.27 -3.41 8.20 -40.61 -0.33 -3.75 16 5 C 0.14 1.67 6.71 -38.56 -0.26 1.42 16 6 C -0.18 -1.47 9.13 -39.15 -0.36 -1.83 16 7 C -0.11 -0.75 10.10 -39.36 -0.40 -1.15 16 8 C 0.05 0.48 11.17 -17.55 -0.20 0.28 16 9 N -0.41 -5.04 6.84 -9.71 -0.07 -5.10 16 10 C 0.05 0.70 6.73 -82.88 -0.56 0.14 16 11 C 0.58 9.68 7.83 -12.34 -0.10 9.58 16 12 O -0.52 -9.97 15.39 -16.63 -0.26 -10.23 16 13 N -0.60 -9.48 3.33 -171.77 -0.57 -10.05 16 14 C 0.12 1.68 5.40 -3.06 -0.02 1.66 16 15 C -0.12 -1.92 6.11 -24.90 -0.15 -2.07 16 16 C -0.10 -1.72 2.61 -88.59 -0.23 -1.95 16 17 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 18 C 0.19 3.62 2.41 -67.93 -0.16 3.46 16 19 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 20 C -0.17 -3.08 9.27 37.16 0.34 -2.73 16 21 N -0.72 -17.56 4.80 -53.43 -0.26 -17.82 16 22 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 26 Si 0.90 22.38 29.55 -169.99 -5.02 17.35 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.12 1.82 5.67 -2.65 -0.01 1.81 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.39 7.71 -51.92 -0.40 -0.01 16 37 H 0.06 0.39 7.69 -51.93 -0.40 -0.01 16 38 H 0.14 0.76 6.46 -52.49 -0.34 0.43 16 39 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 40 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 42 H 0.07 1.01 7.40 -51.93 -0.38 0.62 16 43 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 48 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 50 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 51 H 0.07 1.08 7.99 -51.93 -0.41 0.67 16 LS Contribution 411.96 15.07 6.21 6.21 Total: -1.00 -33.48 411.96 -10.04 -43.52 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.49 Total: 6.28 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.97 Total: 0.73 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.17 Total: -60.12 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.59 Total: -13.98 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.48 -10.04 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699944819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.626 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds