Wall clock time and date at job start Wed Apr 1 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47338 * 2 1 4 4 O 1.42896 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.35653 * 117.00055 * 179.97438 * 4 3 2 6 6 C 1.39343 * 120.53697 * 359.72327 * 5 4 3 7 7 C 1.38306 * 118.43545 * 180.29575 * 6 5 4 8 8 C 1.38759 * 119.44634 * 359.95410 * 7 6 5 9 9 N 1.31377 * 121.06918 * 0.04499 * 8 7 6 10 10 C 1.32860 * 121.69259 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78032 * 179.97438 * 10 9 8 12 12 O 1.21552 * 119.99818 * 180.02562 * 11 10 9 13 13 N 1.34769 * 120.00324 * 0.02562 * 11 10 9 14 14 C 1.47026 * 125.64673 * 0.02818 * 13 11 10 15 15 C 1.54325 * 107.26990 * 178.90285 * 14 13 11 16 16 C 1.55156 * 102.94357 * 337.80501 * 15 14 13 17 17 H 1.08998 * 111.00465 * 277.39083 * 16 15 14 18 18 C 1.52995 * 111.00158 * 153.57521 * 16 15 14 19 19 H 1.09001 * 109.47514 * 300.70255 * 18 16 15 20 20 C 1.53002 * 109.46992 * 180.70480 * 18 16 15 21 21 N 1.46497 * 109.47287 * 60.70748 * 18 16 15 22 22 C 1.36938 * 120.00203 * 205.00015 * 21 18 16 23 23 H 1.07993 * 119.99988 * 359.97438 * 22 21 18 24 24 C 1.38813 * 120.00267 * 179.97438 * 22 21 18 25 25 N 1.31619 * 119.99639 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00208 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46826 * 90.00148 * 26 24 22 28 28 H 1.48503 * 109.47410 * 209.99728 * 26 24 22 29 29 H 1.48501 * 109.47316 * 330.00130 * 26 24 22 30 30 C 1.47425 * 125.65200 * 179.71937 * 13 11 10 31 31 H 1.08997 * 109.47333 * 300.00501 * 1 2 3 32 32 H 1.09002 * 109.46494 * 60.00478 * 1 2 3 33 33 H 1.08996 * 109.46973 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47927 * 239.99948 * 2 1 3 35 35 H 1.09006 * 109.46981 * 119.99495 * 2 1 3 36 36 H 1.09008 * 109.46870 * 59.99282 * 3 2 1 37 37 H 1.08997 * 109.46771 * 299.99977 * 3 2 1 38 38 H 1.07997 * 120.78387 * 0.27320 * 6 5 4 39 39 H 1.08006 * 120.27594 * 179.97438 * 7 6 5 40 40 H 1.07999 * 119.46653 * 180.02562 * 8 7 6 41 41 H 1.08996 * 109.88407 * 298.31852 * 14 13 11 42 42 H 1.09003 * 109.88414 * 59.33284 * 14 13 11 43 43 H 1.08994 * 110.71987 * 96.17524 * 15 14 13 44 44 H 1.09004 * 110.71781 * 219.43869 * 15 14 13 45 45 H 1.08999 * 109.47337 * 185.27039 * 20 18 16 46 46 H 1.09005 * 109.47369 * 305.26981 * 20 18 16 47 47 H 1.08996 * 109.47505 * 65.27275 * 20 18 16 48 48 H 0.97004 * 119.99860 * 24.99516 * 21 18 16 49 49 H 0.97008 * 120.00069 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.36213 * 323.00349 * 30 13 11 51 51 H 1.08995 * 110.37086 * 85.32464 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0849 2.6512 0.0001 6 6 3.3370 3.8269 -0.0067 7 6 4.0096 5.0353 -0.0131 8 6 5.3972 5.0437 -0.0117 9 7 6.0820 3.9225 -0.0052 10 6 5.4810 2.7376 0.0008 11 6 6.2932 1.5024 0.0074 12 8 5.7475 0.4162 0.0125 13 7 7.6386 1.5805 0.0079 14 6 8.4248 2.8229 0.0029 15 6 9.9148 2.4223 0.0338 16 6 9.8770 0.9886 0.6256 17 1 9.8204 1.0164 1.7138 18 6 11.0855 0.1724 0.1629 19 1 11.0883 0.1122 -0.9254 20 6 11.0042 -1.2376 0.7514 21 7 12.3170 0.8216 0.6193 22 6 13.4907 0.6144 -0.0550 23 1 13.5086 -0.0280 -0.9230 24 6 14.6574 1.2300 0.3770 25 7 14.6354 2.0132 1.4346 26 14 16.2585 0.9467 -0.5424 27 1 16.4062 1.9719 -1.6066 28 1 17.3979 1.0487 0.4046 29 1 16.2445 -0.4054 -1.1562 30 6 8.5659 0.4344 0.0201 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8935 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 2.2575 3.7952 -0.0073 39 1 3.4595 5.9647 -0.0189 40 1 5.9228 5.9871 -0.0163 41 1 8.2127 3.3921 -0.9021 42 1 8.1806 3.4197 0.8818 43 1 10.3327 2.4132 -0.9728 44 1 10.4808 3.0921 0.6813 45 1 11.9098 -1.7893 0.4995 46 1 10.9071 -1.1740 1.8353 47 1 10.1376 -1.7542 0.3387 48 1 12.3009 1.3983 1.3991 49 1 15.4507 2.4437 1.7363 50 1 8.1693 -0.3677 0.6426 51 1 8.7407 0.0771 -0.9947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699944819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:38 Heat of formation + Delta-G solvation = -42.390976 kcal Electronic energy + Delta-G solvation = -30566.641075 eV Core-core repulsion = 26465.956084 eV Total energy + Delta-G solvation = -4100.684991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04168 -40.69554 -39.35752 -38.88258 -36.74860 -34.92874 -34.29457 -33.40333 -31.94067 -31.35955 -30.76849 -28.87070 -27.63049 -26.54192 -25.69269 -24.23821 -23.77770 -22.73230 -22.39130 -21.10928 -20.92249 -19.17876 -19.09675 -18.56652 -17.91247 -17.48001 -17.23406 -16.74717 -16.52073 -16.06743 -15.63631 -15.46508 -15.41994 -15.15028 -14.83028 -14.72464 -14.56129 -14.24611 -13.98458 -13.90337 -13.78309 -13.51907 -13.39959 -13.17490 -13.05139 -12.97143 -12.83989 -12.73179 -12.54021 -12.28258 -12.15602 -11.99076 -11.95143 -11.66617 -11.63307 -11.53060 -11.42055 -11.20288 -10.89196 -10.82243 -10.48484 -9.76741 -9.40904 -8.95209 -7.88416 -5.15391 -0.36621 0.22552 1.50025 1.50718 1.58899 1.72701 1.88163 2.05600 2.59917 2.81189 3.10446 3.44452 3.51497 3.58420 3.69805 3.74450 3.87062 3.89897 3.94823 4.02880 4.11269 4.24332 4.26585 4.36406 4.40879 4.46977 4.50414 4.51902 4.54830 4.64695 4.69356 4.75229 4.86218 4.88451 4.98743 5.01178 5.02743 5.10547 5.12054 5.14930 5.21479 5.23852 5.30649 5.38744 5.40277 5.47610 5.57264 5.62464 6.22112 6.33471 6.46352 6.73874 7.12098 7.40375 8.16100 8.40728 9.34892 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.002127 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.148727 B =13160.909083 C =14359.360026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.044 3.956 4 O -0.306 6.306 5 C 0.126 3.874 6 C -0.173 4.173 7 C -0.085 4.085 8 C 0.050 3.950 9 N -0.434 5.434 10 C 0.005 3.995 11 C 0.574 3.426 12 O -0.561 6.561 13 N -0.604 5.604 14 C 0.133 3.867 15 C -0.114 4.114 16 C -0.092 4.092 17 H 0.075 0.925 18 C 0.183 3.817 19 H 0.047 0.953 20 C -0.159 4.159 21 N -0.729 5.729 22 C -0.231 4.231 23 H 0.073 0.927 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.967 3.033 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.273 1.273 30 C 0.121 3.879 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.177 0.823 39 H 0.189 0.811 40 H 0.195 0.805 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.043 0.957 47 H 0.065 0.935 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.072 0.928 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.315 7.169 -3.462 33.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.030 4.030 4 O -0.217 6.217 5 C 0.075 3.925 6 C -0.199 4.199 7 C -0.104 4.104 8 C -0.112 4.112 9 N -0.146 5.146 10 C -0.131 4.131 11 C 0.363 3.637 12 O -0.440 6.440 13 N -0.336 5.336 14 C 0.011 3.989 15 C -0.152 4.152 16 C -0.112 4.112 17 H 0.093 0.907 18 C 0.075 3.925 19 H 0.065 0.935 20 C -0.219 4.219 21 N -0.369 5.369 22 C -0.363 4.363 23 H 0.091 0.909 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.797 3.203 27 H -0.215 1.215 28 H -0.225 1.225 29 H -0.198 1.198 30 C -0.002 4.002 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.195 0.805 39 H 0.206 0.794 40 H 0.212 0.788 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.205 0.795 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -31.585 6.251 -3.607 32.399 hybrid contribution 0.464 -0.050 0.068 0.471 sum -31.122 6.201 -3.539 31.930 Atomic orbital electron populations 1.21660 0.91989 1.03196 1.03063 1.21485 0.97567 0.94333 1.02808 1.23310 0.76711 1.00014 1.03013 1.86376 1.23111 1.25770 1.86425 1.20198 0.91877 0.86808 0.93576 1.22147 1.02464 0.90757 1.04507 1.22734 0.95236 0.99627 0.92811 1.23453 0.92725 0.96498 0.98514 1.67839 1.40310 0.97671 1.08734 1.20309 0.89085 0.92508 1.11178 1.17801 0.80798 0.88177 0.76937 1.90777 1.71541 1.29336 1.52335 1.48411 1.04438 1.09602 1.71135 1.22051 0.88730 0.85193 1.02926 1.22570 0.94856 0.96060 1.01763 1.22413 0.93063 0.95667 1.00027 0.90657 1.20277 0.84663 0.90965 0.96626 0.93537 1.22354 1.00562 0.98376 1.00589 1.42495 1.03981 1.56424 1.34040 1.19560 0.87275 1.21951 1.07472 0.90897 1.25453 1.00906 1.00897 0.99514 1.69810 1.27627 1.36656 1.27773 0.85229 0.79887 0.77827 0.77362 1.21547 1.22530 1.19800 1.22143 0.88012 0.88886 1.01115 0.91364 0.91314 0.91401 0.92094 0.92159 0.90028 0.89945 0.80545 0.79414 0.78788 0.90433 0.90531 0.91327 0.90584 0.94309 0.93796 0.91654 0.79462 0.94239 0.90914 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.12 -1.82 6.30 30.60 0.19 -1.63 16 3 C 0.04 0.63 4.76 71.98 0.34 0.98 16 4 O -0.31 -7.75 8.20 -68.69 -0.56 -8.32 16 5 C 0.13 2.93 6.71 22.93 0.15 3.08 16 6 C -0.17 -2.24 9.13 22.55 0.21 -2.03 16 7 C -0.08 -0.78 10.10 22.41 0.23 -0.56 16 8 C 0.05 0.72 11.17 84.89 0.95 1.66 16 9 N -0.43 -10.11 6.84 -184.63 -1.26 -11.38 16 10 C 0.01 0.15 6.73 41.93 0.28 0.43 16 11 C 0.57 19.79 7.83 86.78 0.68 20.47 16 12 O -0.56 -22.45 15.39 17.11 0.26 -22.18 16 13 N -0.60 -19.52 3.33 -815.65 -2.71 -22.23 16 14 C 0.13 3.84 5.40 86.73 0.47 4.31 16 15 C -0.11 -3.71 6.11 31.78 0.19 -3.52 16 16 C -0.09 -3.12 2.61 -9.48 -0.02 -3.14 16 17 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 18 C 0.18 7.23 2.41 44.99 0.11 7.34 16 19 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 20 C -0.16 -5.82 9.27 71.98 0.67 -5.15 16 21 N -0.73 -36.08 4.80 -322.95 -1.55 -37.63 16 22 C -0.23 -12.66 9.93 84.03 0.83 -11.83 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 25 N -0.97 -58.84 13.06 21.65 0.28 -58.55 16 26 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 30 C 0.12 3.90 5.67 86.78 0.49 4.39 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 0.83 7.71 -2.38 -0.02 0.81 16 37 H 0.08 0.82 7.69 -2.39 -0.02 0.80 16 38 H 0.18 1.03 6.46 -2.91 -0.02 1.01 16 39 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 40 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.08 2.13 7.54 -2.39 -0.02 2.11 16 42 H 0.08 2.15 7.40 -2.39 -0.02 2.13 16 43 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 44 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.06 2.02 7.70 -2.39 -0.02 2.00 16 48 H 0.37 19.86 7.80 -92.71 -0.72 19.14 16 49 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 50 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 51 H 0.07 2.26 7.99 -2.39 -0.02 2.24 16 Total: -1.00 -75.67 411.96 3.63 -72.04 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.20 Total: 29.33 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.95 Total: 10.51 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.24 Total: -129.79 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.30 Total: -30.50 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -75.67 3.63 -72.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699944819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.650 kcal (2) G-P(sol) polarization free energy of solvation -75.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds