Wall clock time and date at job start Wed Apr 1 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47097 * 2 1 4 4 O 1.42904 * 109.46904 * 119.99688 * 2 1 3 5 5 C 1.35716 * 117.00053 * 85.25842 * 4 2 1 6 6 C 1.39233 * 120.38328 * 354.63437 * 5 4 2 7 7 C 1.38314 * 118.44843 * 179.97438 * 6 5 4 8 8 C 1.39472 * 119.13357 * 359.97438 * 7 6 5 9 9 C 1.47923 * 119.66037 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00031 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00072 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00053 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.43679 * 325.69964 * 12 11 9 14 14 C 1.54896 * 110.48474 * 88.24032 * 12 11 9 15 15 C 1.55032 * 102.68248 * 156.51888 * 14 12 11 16 16 C 1.54269 * 104.27898 * 322.23080 * 15 14 12 17 17 H 1.08993 * 110.07711 * 264.21103 * 16 15 14 18 18 C 1.53000 * 110.03027 * 142.80060 * 16 15 14 19 19 N 1.46507 * 109.46822 * 67.83672 * 18 16 15 20 20 C 1.36937 * 119.99820 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00132 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99615 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99613 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00339 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46849 * 90.00060 * 24 22 20 26 26 H 1.48499 * 109.47466 * 209.99864 * 24 22 20 27 27 H 1.48493 * 109.46959 * 330.00322 * 24 22 20 28 28 C 1.53878 * 106.59937 * 23.52239 * 16 15 14 29 29 N 1.32799 * 120.68016 * 359.97438 * 8 7 6 30 30 C 1.31375 * 121.69760 * 0.02562 * 29 8 7 31 31 H 1.09002 * 109.46660 * 60.00307 * 1 2 3 32 32 H 1.08993 * 109.47398 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47268 * 300.00620 * 1 2 3 34 34 H 1.08994 * 109.47093 * 239.99899 * 2 1 3 35 35 H 1.09002 * 109.46957 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46831 * 299.99882 * 3 2 1 37 37 H 1.08999 * 109.46852 * 59.99694 * 3 2 1 38 38 H 1.08003 * 120.77371 * 359.95487 * 6 5 4 39 39 H 1.07998 * 120.43559 * 179.97438 * 7 6 5 40 40 H 0.96998 * 120.00367 * 359.97438 * 11 9 8 41 41 H 1.09001 * 110.75668 * 274.93870 * 14 12 11 42 42 H 1.08998 * 110.75487 * 38.30965 * 14 12 11 43 43 H 1.08995 * 110.52179 * 203.48869 * 15 14 12 44 44 H 1.08999 * 110.48102 * 80.95742 * 15 14 12 45 45 H 1.08997 * 109.47801 * 187.83248 * 18 16 15 46 46 H 1.09002 * 109.47598 * 307.83748 * 18 16 15 47 47 H 0.96995 * 120.00053 * 359.97438 * 19 18 16 48 48 H 0.96999 * 119.99874 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.02798 * 240.71148 * 28 16 15 50 50 H 1.09002 * 110.03482 * 119.27796 * 28 16 15 51 51 H 1.08004 * 119.59199 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1175 -2.0244 1.0963 6 6 1.6722 -2.7097 -0.0309 7 6 1.8054 -4.0861 -0.0605 8 6 2.3780 -4.7366 1.0323 9 6 2.5256 -6.2083 1.0131 10 8 2.1483 -6.8444 0.0486 11 7 3.0785 -6.8438 2.0652 12 6 3.2242 -8.3014 2.0465 13 1 2.3906 -8.7604 1.5150 14 6 4.5703 -8.7033 1.3941 15 6 4.8305 -10.1108 1.9898 16 6 4.3386 -10.0036 3.4480 17 1 5.1756 -9.7807 4.1097 18 6 3.6692 -11.3122 3.8728 19 7 4.6763 -12.3734 3.9495 20 6 4.3083 -13.6416 4.3121 21 1 3.2757 -13.8594 4.5420 22 6 5.2627 -14.6470 4.3852 23 7 4.9090 -15.8658 4.7343 24 14 7.0487 -14.2702 3.9884 25 1 7.7535 -13.8527 5.2270 26 1 7.6994 -15.4844 3.4339 27 1 7.1130 -13.1738 2.9889 28 6 3.3173 -8.8532 3.4841 29 7 2.7921 -4.0483 2.0898 30 6 2.6800 -2.7406 2.1494 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.2327 -2.1789 -0.8625 39 1 1.4704 -4.6498 -0.9187 40 1 3.3799 -6.3362 2.8348 41 1 4.4745 -8.7522 0.3094 42 1 5.3612 -8.0108 1.6823 43 1 5.8942 -10.3467 1.9623 44 1 4.2593 -10.8653 1.4490 45 1 3.2037 -11.1819 4.8498 46 1 2.9085 -11.5853 3.1415 47 1 5.6036 -12.1779 3.7427 48 1 5.5758 -16.5685 4.7850 49 1 3.6591 -8.0717 4.1626 50 1 2.3447 -9.2272 3.8041 51 1 3.0278 -2.2150 3.0265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700911914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:11 Heat of formation + Delta-G solvation = -38.474188 kcal Electronic energy + Delta-G solvation = -29297.863308 eV Core-core repulsion = 25197.348162 eV Total energy + Delta-G solvation = -4100.515146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42032 -40.09032 -38.90514 -37.89815 -34.97559 -34.04461 -33.51853 -32.72042 -31.35897 -30.76325 -29.00018 -28.05626 -27.81168 -25.23172 -24.49814 -23.91083 -22.23587 -21.80675 -21.02535 -20.44934 -19.65913 -19.06127 -18.18269 -17.48016 -17.39133 -16.33757 -16.21257 -15.72831 -15.32117 -15.10131 -14.89308 -14.76167 -14.47957 -14.32777 -13.98295 -13.90080 -13.61895 -13.35112 -13.16525 -13.06981 -13.01089 -12.91281 -12.62802 -12.55388 -12.35670 -11.84993 -11.71222 -11.60177 -11.48220 -11.19959 -10.90831 -10.73338 -10.64524 -10.51222 -10.37332 -10.32242 -10.24289 -10.00192 -9.94087 -9.53647 -9.16576 -8.90253 -8.83302 -7.16469 -5.71810 -3.06485 0.26919 0.64474 2.36552 2.46737 2.95102 3.41252 3.44092 3.46509 3.48867 3.80105 3.94445 4.07834 4.13703 4.25146 4.36509 4.51921 4.57993 4.63946 4.67947 4.75535 4.85411 4.96730 5.00636 5.03291 5.06546 5.24018 5.34979 5.40274 5.42280 5.46488 5.48454 5.54330 5.55454 5.59189 5.63243 5.77283 5.81063 5.89003 5.99155 6.06702 6.17002 6.23300 6.41194 6.50536 6.57253 6.60447 6.76469 6.88613 7.16872 7.47732 8.04641 8.05524 8.47628 9.27468 9.99959 10.20446 11.46867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.036700 B = 0.001524 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.753017 B =18372.812745 C =18460.099260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.299 6.299 5 C 0.106 3.894 6 C -0.179 4.179 7 C -0.066 4.066 8 C 0.036 3.964 9 C 0.574 3.426 10 O -0.536 6.536 11 N -0.702 5.702 12 C 0.137 3.863 13 H 0.097 0.903 14 C -0.133 4.133 15 C -0.114 4.114 16 C -0.100 4.100 17 H 0.074 0.926 18 C 0.163 3.837 19 N -0.756 5.756 20 C -0.242 4.242 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.120 4.120 29 N -0.418 5.418 30 C 0.075 3.925 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.409 0.591 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.026 0.974 46 H 0.028 0.972 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 39.107 -10.866 41.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 C -0.207 4.207 4 O -0.211 6.211 5 C 0.057 3.943 6 C -0.205 4.205 7 C -0.087 4.087 8 C -0.102 4.102 9 C 0.359 3.641 10 O -0.412 6.412 11 N -0.352 5.352 12 C 0.033 3.967 13 H 0.115 0.885 14 C -0.172 4.172 15 C -0.152 4.152 16 C -0.119 4.119 17 H 0.092 0.908 18 C 0.036 3.964 19 N -0.401 5.401 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.159 4.159 29 N -0.130 5.130 30 C -0.087 4.087 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.245 0.755 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.080 38.091 -10.640 40.178 hybrid contribution 0.979 0.844 -0.777 1.507 sum -6.102 38.934 -11.417 41.030 Atomic orbital electron populations 1.22408 0.94544 1.03344 1.03690 1.22596 0.94710 0.94020 0.86962 1.21872 1.02331 0.93013 1.03439 1.86128 1.80290 1.15472 1.39197 1.20440 0.94590 0.83984 0.95276 1.21762 1.04634 0.95009 0.99086 1.21966 0.94235 0.93710 0.98768 1.21084 1.02380 0.94596 0.92095 1.17720 0.77844 0.85430 0.83147 1.90803 1.50144 1.66580 1.33720 1.45965 1.61076 1.08177 1.19980 1.22018 0.98908 0.78427 0.97305 0.88512 1.22913 0.96441 0.97472 1.00327 1.22385 1.01586 0.95937 0.95327 1.21936 0.97813 0.95132 0.97020 0.90782 1.20783 0.91782 0.85979 0.97857 1.42710 1.05912 1.07251 1.84245 1.19086 0.96015 0.84230 1.37857 0.89273 1.24667 0.97499 0.95404 1.01692 1.69708 1.33146 1.00901 1.54670 0.86541 0.86704 0.77103 0.78185 1.21160 1.21791 1.20270 1.22385 1.00700 0.97935 0.94853 1.67582 1.13337 1.07638 1.24413 1.22245 0.99703 0.88684 0.98107 0.90559 0.91764 0.91057 0.90596 0.91414 0.90188 0.91170 0.83499 0.83043 0.75478 0.91290 0.91485 0.91614 0.90599 0.95616 0.95401 0.80684 0.93141 0.91257 0.90501 0.81181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 9.19 37.16 0.34 -0.24 16 2 C 0.07 0.28 2.85 -26.73 -0.08 0.21 16 3 C -0.15 -0.39 9.56 37.16 0.36 -0.04 16 4 O -0.30 -1.89 9.80 -18.85 -0.18 -2.08 16 5 C 0.11 0.76 6.63 -38.84 -0.26 0.50 16 6 C -0.18 -1.20 8.34 -39.18 -0.33 -1.53 16 7 C -0.07 -0.58 9.62 -39.09 -0.38 -0.96 16 8 C 0.04 0.38 6.74 -83.02 -0.56 -0.18 16 9 C 0.57 7.27 7.80 -12.30 -0.10 7.17 16 10 O -0.54 -8.30 15.99 5.33 0.09 -8.22 16 11 N -0.70 -7.99 5.16 -53.11 -0.27 -8.27 16 12 C 0.14 1.72 3.18 -66.27 -0.21 1.51 16 13 H 0.10 1.35 7.61 -51.93 -0.40 0.96 16 14 C -0.13 -1.71 6.59 -24.66 -0.16 -1.88 16 15 C -0.11 -1.70 6.08 -24.99 -0.15 -1.85 16 16 C -0.10 -1.51 2.96 -89.50 -0.27 -1.77 16 17 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 18 C 0.16 3.17 5.31 -4.04 -0.02 3.15 16 19 N -0.76 -18.26 5.25 -59.90 -0.31 -18.57 16 20 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 21 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 23 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 24 Si 0.88 22.50 27.74 -169.99 -4.71 17.78 16 25 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 27 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 28 C -0.12 -1.47 6.19 -25.61 -0.16 -1.63 16 29 N -0.42 -4.03 9.52 -9.68 -0.09 -4.13 16 30 C 0.07 0.59 11.14 -17.38 -0.19 0.39 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.25 6.97 -51.93 -0.36 -0.12 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.24 6.32 -51.93 -0.33 -0.09 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.15 0.62 5.59 -52.48 -0.29 0.33 16 39 H 0.15 1.25 7.63 -52.49 -0.40 0.85 16 40 H 0.41 4.03 7.66 -40.82 -0.31 3.71 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.24 7.76 -51.93 -0.40 0.83 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 47 H 0.36 8.48 5.41 -40.82 -0.22 8.26 16 48 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 49 H 0.07 0.73 7.72 -51.93 -0.40 0.33 16 50 H 0.08 0.94 7.67 -51.93 -0.40 0.54 16 51 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 410.54 15.07 6.19 6.19 Total: -1.00 -34.60 410.54 -9.12 -43.71 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.17 Total: 7.03 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.41 Total: -4.30 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.09 Total: -60.11 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.10 Total: -10.29 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.60 -9.12 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700911914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.241 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds