Wall clock time and date at job start Wed Apr 1 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47097 * 2 1 4 4 O 1.42904 * 109.46904 * 119.99688 * 2 1 3 5 5 C 1.35716 * 117.00053 * 85.25842 * 4 2 1 6 6 C 1.39233 * 120.38328 * 354.63437 * 5 4 2 7 7 C 1.38314 * 118.44843 * 179.97438 * 6 5 4 8 8 C 1.39472 * 119.13357 * 359.97438 * 7 6 5 9 9 C 1.47923 * 119.66037 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00031 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00072 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00053 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.43679 * 325.69964 * 12 11 9 14 14 C 1.54896 * 110.48474 * 88.24032 * 12 11 9 15 15 C 1.55032 * 102.68248 * 156.51888 * 14 12 11 16 16 C 1.54269 * 104.27898 * 322.23080 * 15 14 12 17 17 H 1.08993 * 110.07711 * 264.21103 * 16 15 14 18 18 C 1.53000 * 110.03027 * 142.80060 * 16 15 14 19 19 N 1.46507 * 109.46822 * 67.83672 * 18 16 15 20 20 C 1.36937 * 119.99820 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00132 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99615 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99613 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00339 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46849 * 90.00060 * 24 22 20 26 26 H 1.48499 * 109.47466 * 209.99864 * 24 22 20 27 27 H 1.48493 * 109.46959 * 330.00322 * 24 22 20 28 28 C 1.53878 * 106.59937 * 23.52239 * 16 15 14 29 29 N 1.32799 * 120.68016 * 359.97438 * 8 7 6 30 30 C 1.31375 * 121.69760 * 0.02562 * 29 8 7 31 31 H 1.09002 * 109.46660 * 60.00307 * 1 2 3 32 32 H 1.08993 * 109.47398 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47268 * 300.00620 * 1 2 3 34 34 H 1.08994 * 109.47093 * 239.99899 * 2 1 3 35 35 H 1.09002 * 109.46957 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46831 * 299.99882 * 3 2 1 37 37 H 1.08999 * 109.46852 * 59.99694 * 3 2 1 38 38 H 1.08003 * 120.77371 * 359.95487 * 6 5 4 39 39 H 1.07998 * 120.43559 * 179.97438 * 7 6 5 40 40 H 0.96998 * 120.00367 * 359.97438 * 11 9 8 41 41 H 1.09001 * 110.75668 * 274.93870 * 14 12 11 42 42 H 1.08998 * 110.75487 * 38.30965 * 14 12 11 43 43 H 1.08995 * 110.52179 * 203.48869 * 15 14 12 44 44 H 1.08999 * 110.48102 * 80.95742 * 15 14 12 45 45 H 1.08997 * 109.47801 * 187.83248 * 18 16 15 46 46 H 1.09002 * 109.47598 * 307.83748 * 18 16 15 47 47 H 0.96995 * 120.00053 * 359.97438 * 19 18 16 48 48 H 0.96999 * 119.99874 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.02798 * 240.71148 * 28 16 15 50 50 H 1.09002 * 110.03482 * 119.27796 * 28 16 15 51 51 H 1.08004 * 119.59199 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1175 -2.0244 1.0963 6 6 1.6722 -2.7097 -0.0309 7 6 1.8054 -4.0861 -0.0605 8 6 2.3780 -4.7366 1.0323 9 6 2.5256 -6.2083 1.0131 10 8 2.1483 -6.8444 0.0486 11 7 3.0785 -6.8438 2.0652 12 6 3.2242 -8.3014 2.0465 13 1 2.3906 -8.7604 1.5150 14 6 4.5703 -8.7033 1.3941 15 6 4.8305 -10.1108 1.9898 16 6 4.3386 -10.0036 3.4480 17 1 5.1756 -9.7807 4.1097 18 6 3.6692 -11.3122 3.8728 19 7 4.6763 -12.3734 3.9495 20 6 4.3083 -13.6416 4.3121 21 1 3.2757 -13.8594 4.5420 22 6 5.2627 -14.6470 4.3852 23 7 4.9090 -15.8658 4.7343 24 14 7.0487 -14.2702 3.9884 25 1 7.7535 -13.8527 5.2270 26 1 7.6994 -15.4844 3.4339 27 1 7.1130 -13.1738 2.9889 28 6 3.3173 -8.8532 3.4841 29 7 2.7921 -4.0483 2.0898 30 6 2.6800 -2.7406 2.1494 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.2327 -2.1789 -0.8625 39 1 1.4704 -4.6498 -0.9187 40 1 3.3799 -6.3362 2.8348 41 1 4.4745 -8.7522 0.3094 42 1 5.3612 -8.0108 1.6823 43 1 5.8942 -10.3467 1.9623 44 1 4.2593 -10.8653 1.4490 45 1 3.2037 -11.1819 4.8498 46 1 2.9085 -11.5853 3.1415 47 1 5.6036 -12.1779 3.7427 48 1 5.5758 -16.5685 4.7850 49 1 3.6591 -8.0717 4.1626 50 1 2.3447 -9.2272 3.8041 51 1 3.0278 -2.2150 3.0265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700911914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:10 Heat of formation + Delta-G solvation = -61.730789 kcal Electronic energy + Delta-G solvation = -29298.871790 eV Core-core repulsion = 25197.348162 eV Total energy + Delta-G solvation = -4101.523628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.03624 -40.92969 -39.68138 -38.92171 -36.59775 -34.91759 -34.33458 -33.47058 -33.17634 -31.54429 -30.34686 -29.04321 -28.20516 -26.38033 -25.55497 -24.66083 -23.68695 -22.78862 -21.79654 -21.42551 -20.99072 -19.64748 -19.48082 -18.89369 -18.11230 -17.26137 -16.72878 -16.57144 -16.46906 -16.15783 -16.11069 -15.69084 -15.56736 -15.09298 -14.99725 -14.92911 -14.71612 -14.49131 -14.31787 -14.04245 -13.87253 -13.53339 -13.50020 -13.40547 -13.13958 -12.91548 -12.86437 -12.83432 -12.42179 -12.14991 -12.01452 -12.00192 -11.82016 -11.78644 -11.75293 -11.64650 -11.42295 -11.31589 -10.96315 -10.94296 -10.73704 -10.12375 -9.53090 -9.27517 -8.02055 -5.35112 -0.40737 0.06713 1.38250 1.42145 1.49616 1.63722 1.92001 2.09056 2.49481 2.74603 3.10755 3.29264 3.46332 3.52033 3.56076 3.69390 3.75783 3.85060 3.90190 3.92905 3.95789 3.98418 4.12392 4.37483 4.46726 4.50136 4.59714 4.62226 4.64772 4.67871 4.72104 4.73033 4.77268 4.84638 4.87252 4.89204 4.91497 5.05433 5.06110 5.12112 5.21062 5.23455 5.24100 5.27956 5.36200 5.51309 5.54520 5.76671 6.12047 6.22201 6.39188 6.71588 7.09402 7.13980 7.86013 8.06194 9.19744 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.036700 B = 0.001524 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.753017 B =18372.812745 C =18460.099260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 C -0.148 4.148 4 O -0.305 6.305 5 C 0.114 3.886 6 C -0.172 4.172 7 C -0.070 4.070 8 C 0.012 3.988 9 C 0.571 3.429 10 O -0.573 6.573 11 N -0.692 5.692 12 C 0.142 3.858 13 H 0.078 0.922 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.090 4.090 17 H 0.084 0.916 18 C 0.159 3.841 19 N -0.757 5.757 20 C -0.237 4.237 21 H 0.054 0.946 22 C -0.065 4.065 23 N -0.985 5.985 24 Si 0.957 3.043 25 H -0.276 1.276 26 H -0.296 1.296 27 H -0.250 1.250 28 C -0.110 4.110 29 N -0.427 5.427 30 C 0.069 3.931 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.418 0.582 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.026 0.974 46 H 0.019 0.981 47 H 0.367 0.633 48 H 0.258 0.742 49 H 0.096 0.904 50 H 0.076 0.924 51 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 42.919 -11.406 44.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.009 3.991 3 C -0.205 4.205 4 O -0.217 6.217 5 C 0.064 3.936 6 C -0.198 4.198 7 C -0.091 4.091 8 C -0.125 4.125 9 C 0.358 3.642 10 O -0.452 6.452 11 N -0.343 5.343 12 C 0.037 3.963 13 H 0.096 0.904 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.109 4.109 17 H 0.103 0.897 18 C 0.033 3.967 19 N -0.402 5.402 20 C -0.368 4.368 21 H 0.072 0.928 22 C -0.256 4.256 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.202 1.202 26 H -0.223 1.223 27 H -0.174 1.174 28 C -0.148 4.148 29 N -0.139 5.139 30 C -0.094 4.094 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.190 0.810 39 H 0.169 0.831 40 H 0.256 0.744 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.200 0.800 48 H 0.066 0.934 49 H 0.114 0.886 50 H 0.094 0.906 51 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.965 41.972 -11.173 43.841 hybrid contribution 0.483 -0.212 -0.600 0.799 sum -5.483 41.760 -11.774 43.733 Atomic orbital electron populations 1.22409 0.93961 1.03109 1.04356 1.22884 0.95225 0.94534 0.86457 1.21902 1.02129 0.92267 1.04213 1.86143 1.80076 1.14865 1.40601 1.20494 0.93563 0.84525 0.95001 1.21977 1.03928 0.94153 0.99726 1.22035 0.94123 0.94620 0.98317 1.20847 1.04680 0.93509 0.93454 1.18068 0.77088 0.86414 0.82658 1.90776 1.51796 1.67610 1.35046 1.45844 1.60686 1.07611 1.20125 1.21833 0.98098 0.79137 0.97221 0.90409 1.22810 0.96980 0.96494 0.99752 1.22340 1.01230 0.96609 0.95071 1.21837 0.98466 0.93495 0.97132 0.89745 1.20966 0.91135 0.86939 0.97641 1.42700 1.07131 1.06502 1.83896 1.19072 0.94550 0.86400 1.36746 0.92835 1.25535 1.02719 0.95091 1.02279 1.69898 1.34836 1.02225 1.56657 0.85381 0.80111 0.77425 0.78748 1.20197 1.22283 1.17439 1.22294 0.99930 0.97477 0.95132 1.67520 1.13685 1.08484 1.24162 1.22615 0.99508 0.88239 0.99055 0.88774 0.92412 0.91587 0.89553 0.91753 0.88359 0.91488 0.80980 0.83103 0.74350 0.92078 0.89946 0.91497 0.92604 0.95639 0.96283 0.79994 0.93361 0.88593 0.90555 0.79190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.73 9.19 71.98 0.66 -0.07 16 2 C 0.06 0.34 2.85 30.60 0.09 0.42 16 3 C -0.15 -0.43 9.56 71.98 0.69 0.26 16 4 O -0.30 -3.18 9.80 -90.38 -0.89 -4.07 16 5 C 0.11 1.40 6.63 22.75 0.15 1.55 16 6 C -0.17 -1.99 8.34 22.53 0.19 -1.80 16 7 C -0.07 -1.17 9.62 22.59 0.22 -0.95 16 8 C 0.01 0.24 6.74 41.86 0.28 0.52 16 9 C 0.57 14.33 7.80 86.81 0.68 15.00 16 10 O -0.57 -18.05 15.99 -3.86 -0.06 -18.11 16 11 N -0.69 -14.99 5.16 -440.24 -2.27 -17.26 16 12 C 0.14 3.40 3.18 46.07 0.15 3.55 16 13 H 0.08 2.20 7.61 -2.39 -0.02 2.18 16 14 C -0.12 -2.97 6.59 31.94 0.21 -2.76 16 15 C -0.11 -3.25 6.08 31.72 0.19 -3.06 16 16 C -0.09 -2.56 2.96 -10.07 -0.03 -2.59 16 17 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 18 C 0.16 6.12 5.31 86.38 0.46 6.58 16 19 N -0.76 -36.13 5.25 -343.43 -1.80 -37.93 16 20 C -0.24 -13.94 10.47 84.03 0.88 -13.06 16 21 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 23 N -0.99 -64.58 13.97 21.65 0.30 -64.28 16 24 Si 0.96 46.23 27.74 68.60 1.90 48.13 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 27 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 28 C -0.11 -2.47 6.19 31.32 0.19 -2.28 16 29 N -0.43 -7.65 9.52 -184.53 -1.76 -9.41 16 30 C 0.07 0.95 11.14 85.00 0.95 1.90 16 31 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 0.32 6.97 -2.39 -0.02 0.30 16 33 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.09 0.29 6.32 -2.39 -0.02 0.27 16 35 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.10 -0.07 8.14 -2.39 -0.02 -0.08 16 37 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.17 1.00 5.59 -2.91 -0.02 0.98 16 39 H 0.15 2.46 7.63 -2.91 -0.02 2.44 16 40 H 0.42 7.45 7.66 -92.71 -0.71 6.74 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.81 7.76 -2.39 -0.02 1.79 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 47 H 0.37 16.54 5.41 -92.71 -0.50 16.04 16 48 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 49 H 0.10 1.70 7.72 -2.39 -0.02 1.68 16 50 H 0.08 1.76 7.67 -2.39 -0.02 1.75 16 51 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -76.38 410.54 1.52 -74.86 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.32 Total: 28.31 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.42 Total: -0.24 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -5.53 Total: -128.88 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.95 Total: -22.18 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.13 kcal Total: -76.38 1.52 -74.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700911914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.132 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds