Wall clock time and date at job start Wed Apr 1 2020 04:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 O 1.42894 * 109.46954 * 119.99631 * 2 1 3 5 5 C 1.35427 * 117.00072 * 90.00475 * 4 2 1 6 6 N 1.32242 * 119.79775 * 359.72555 * 5 4 2 7 7 C 1.31879 * 121.79655 * 179.70854 * 6 5 4 8 8 C 1.38357 * 121.18813 * 0.57102 * 7 6 5 9 9 C 1.38336 * 119.45913 * 359.72242 * 8 7 6 10 10 C 1.39992 * 118.34548 * 359.97438 * 9 8 7 11 11 C 1.47527 * 120.59507 * 180.02562 * 10 9 8 12 12 O 1.21583 * 120.00310 * 179.97438 * 11 10 9 13 13 N 1.34779 * 119.99881 * 359.97438 * 11 10 9 14 14 C 1.46493 * 120.00071 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47173 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.64410 * 305.70282 * 16 15 14 18 18 C 1.55156 * 110.72008 * 182.55775 * 16 15 14 19 19 C 1.54912 * 101.58488 * 206.13829 * 18 16 15 20 20 N 1.47423 * 104.82844 * 37.00981 * 19 18 16 21 21 C 1.36939 * 125.64215 * 155.90517 * 20 19 18 22 22 H 1.07993 * 120.00304 * 342.04848 * 21 20 19 23 23 C 1.38812 * 119.99315 * 162.04584 * 21 20 19 24 24 N 1.31622 * 119.99458 * 156.25441 * 23 21 20 25 25 Si 1.86801 * 120.00425 * 336.25065 * 23 21 20 26 26 H 1.48494 * 109.47093 * 84.67322 * 25 23 21 27 27 H 1.48500 * 109.46757 * 204.66932 * 25 23 21 28 28 H 1.48497 * 109.47141 * 324.67116 * 25 23 21 29 29 C 1.47318 * 108.73717 * 335.71637 * 20 19 18 30 30 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47368 * 300.00272 * 1 2 3 32 32 H 1.08998 * 109.46906 * 60.00611 * 1 2 3 33 33 H 1.08993 * 109.47764 * 240.00095 * 2 1 3 34 34 H 1.09000 * 109.47450 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46939 * 299.99913 * 3 2 1 36 36 H 1.09007 * 109.46798 * 59.99412 * 3 2 1 37 37 H 1.07999 * 119.40344 * 180.29167 * 7 6 5 38 38 H 1.08001 * 120.27014 * 179.70066 * 8 7 6 39 39 H 1.07996 * 120.82758 * 179.97438 * 9 8 7 40 40 H 0.97006 * 119.99888 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47128 * 300.00230 * 14 13 11 42 42 H 1.08999 * 109.47375 * 59.99841 * 14 13 11 43 43 H 1.08998 * 109.47138 * 299.99867 * 15 14 13 44 44 H 1.09000 * 109.47079 * 60.00565 * 15 14 13 45 45 H 1.08996 * 111.00724 * 324.21458 * 18 16 15 46 46 H 1.09008 * 111.00440 * 88.02544 * 18 16 15 47 47 H 1.09000 * 110.36503 * 155.85193 * 19 18 16 48 48 H 1.09007 * 110.36262 * 278.06355 * 19 18 16 49 49 H 0.97001 * 119.99779 * 180.02562 * 24 23 21 50 50 H 1.08999 * 110.06069 * 241.87031 * 29 20 19 51 51 H 1.08998 * 109.84551 * 120.61514 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2113 -2.0084 1.0655 6 7 1.9649 -2.6263 -0.0774 7 6 2.1559 -3.9232 -0.2214 8 6 2.6144 -4.7007 0.8271 9 6 2.8830 -4.1071 2.0475 10 6 2.6788 -2.7281 2.1751 11 6 2.9500 -2.0441 3.4538 12 8 2.7693 -0.8458 3.5526 13 7 3.3979 -2.7475 4.5126 14 6 3.6677 -2.0683 5.7822 15 6 4.1613 -3.0874 6.8111 16 6 4.4437 -2.3778 8.1369 17 1 5.1308 -1.5449 7.9882 18 6 5.0075 -3.3745 9.1838 19 6 4.5805 -2.7039 10.5133 20 7 3.2515 -2.1293 10.2362 21 6 2.2894 -1.8561 11.1717 22 1 2.3411 -2.3131 12.1488 23 6 1.2478 -0.9917 10.8639 24 7 0.1107 -1.0709 11.5220 25 14 1.4600 0.2839 9.5158 26 1 1.1577 -0.3324 8.1991 27 1 0.5314 1.4175 9.7566 28 1 2.8593 0.7808 9.5203 29 6 3.1307 -1.8931 8.7871 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.9464 -4.3874 -1.1738 38 1 2.7610 -5.7624 0.6941 39 1 3.2413 -4.6930 2.8809 40 1 3.5417 -3.7036 4.4339 41 1 4.4312 -1.3052 5.6309 42 1 2.7529 -1.5999 6.1453 43 1 3.3975 -3.8502 6.9623 44 1 5.0761 -3.5561 6.4483 45 1 4.5469 -4.3565 9.0760 46 1 6.0930 -3.4444 9.1117 47 1 4.5147 -3.4463 11.3086 48 1 5.2859 -1.9187 10.7857 49 1 -0.6173 -0.4671 11.3067 50 1 2.9908 -0.8299 8.5919 51 1 2.2887 -2.4592 8.3888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713742328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:51 Heat of formation + Delta-G solvation = -12.673916 kcal Electronic energy + Delta-G solvation = -30509.239608 eV Core-core repulsion = 26409.843246 eV Total energy + Delta-G solvation = -4099.396362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24261 -39.36466 -38.49461 -38.08721 -35.26229 -33.51055 -33.40862 -32.68315 -31.35007 -30.58064 -29.22840 -27.51188 -27.20050 -25.15241 -24.52615 -23.81329 -22.42744 -21.60279 -20.83010 -20.22023 -19.81648 -18.88261 -17.73281 -17.25794 -16.92763 -16.20652 -16.01324 -15.68852 -15.47601 -15.18297 -14.77437 -14.62865 -14.41536 -14.15899 -13.67135 -13.55108 -13.44632 -13.34942 -12.94973 -12.79299 -12.62002 -12.58962 -12.52123 -12.35857 -12.20376 -12.02163 -11.53048 -11.33733 -11.21359 -11.06087 -11.04436 -10.78089 -10.49923 -10.44106 -10.34347 -10.28534 -10.11504 -9.78499 -9.70686 -9.25480 -9.11243 -8.81376 -8.56446 -7.00882 -5.90562 -3.18538 0.33853 0.85918 2.69616 2.74882 3.01331 3.43186 3.53638 3.55686 3.57772 3.85511 4.29823 4.42180 4.56078 4.60787 4.63528 4.71350 4.73343 4.81683 4.94748 4.96659 5.00887 5.07749 5.24394 5.30657 5.39250 5.43108 5.46040 5.47144 5.52592 5.55118 5.55620 5.61934 5.75424 5.82683 5.87507 5.93051 5.96092 6.00773 6.09396 6.16246 6.18684 6.36741 6.39658 6.52127 6.65531 6.83211 6.83842 7.00178 7.32889 7.47278 7.76764 8.18451 8.35700 8.88605 9.74518 10.23962 11.25919 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.002539 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.793802 B =11025.860858 C =12387.313069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 C -0.150 4.150 4 O -0.263 6.263 5 C 0.376 3.624 6 N -0.546 5.546 7 C 0.165 3.835 8 C -0.223 4.223 9 C -0.008 4.008 10 C -0.210 4.210 11 C 0.559 3.441 12 O -0.511 6.511 13 N -0.727 5.727 14 C 0.116 3.884 15 C -0.117 4.117 16 C -0.099 4.099 17 H 0.076 0.924 18 C -0.124 4.124 19 C 0.132 3.868 20 N -0.611 5.611 21 C -0.243 4.243 22 H 0.092 0.908 23 C 0.021 3.979 24 N -0.908 5.908 25 Si 0.886 3.114 26 H -0.285 1.285 27 H -0.304 1.304 28 H -0.280 1.280 29 C 0.123 3.877 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.164 0.836 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.396 0.604 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.023 0.977 49 H 0.263 0.737 50 H 0.025 0.975 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 -7.942 -27.731 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.167 6.167 5 C 0.196 3.804 6 N -0.270 5.270 7 C 0.008 3.992 8 C -0.243 4.243 9 C -0.034 4.034 10 C -0.216 4.216 11 C 0.345 3.655 12 O -0.387 6.387 13 N -0.380 5.380 14 C -0.007 4.007 15 C -0.155 4.155 16 C -0.118 4.118 17 H 0.095 0.905 18 C -0.163 4.163 19 C 0.006 3.994 20 N -0.338 5.338 21 C -0.370 4.370 22 H 0.110 0.890 23 C -0.177 4.177 24 N -0.552 5.552 25 Si 0.718 3.282 26 H -0.212 1.212 27 H -0.232 1.232 28 H -0.207 1.207 29 C -0.002 4.002 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.043 0.957 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.364 -6.230 -27.989 29.604 hybrid contribution 0.248 -0.202 -0.283 0.427 sum 7.612 -6.432 -28.271 29.976 Atomic orbital electron populations 1.22217 0.94711 1.02788 1.02853 1.22458 0.94626 0.93215 0.87739 1.21889 1.02018 0.93707 1.03098 1.86613 1.77847 1.14637 1.37622 1.19846 0.87153 0.85275 0.88090 1.67443 1.22776 1.12762 1.24043 1.22673 0.89964 0.87687 0.98846 1.21919 1.06325 1.02091 0.94007 1.21656 0.91703 0.92127 0.97928 1.20077 1.12279 0.94303 0.94967 1.17775 0.77866 0.86924 0.82972 1.90864 1.50477 1.13870 1.83450 1.45895 1.68413 1.11797 1.11878 1.21514 1.01834 0.95553 0.81800 1.21777 1.01382 0.98004 0.94305 1.22109 0.98283 0.98218 0.93226 0.90526 1.22776 0.99317 0.98349 0.95817 1.21606 0.87402 0.95475 0.94909 1.44885 1.12774 1.74813 1.01363 1.18658 1.00299 1.22350 0.95663 0.89019 1.24946 0.95691 0.99064 0.98011 1.69861 1.02417 1.38776 1.44147 0.86937 0.76696 0.82621 0.81972 1.21215 1.23244 1.20670 1.21790 0.94948 0.97766 0.85663 0.92159 0.91639 0.91052 0.89419 0.91833 0.90555 0.91230 0.81883 0.83833 0.83793 0.76984 0.91257 0.90786 0.90816 0.91298 0.91270 0.91623 0.93403 0.95934 0.92754 0.95732 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.53 37.16 0.35 -1.27 16 2 C 0.08 0.81 3.11 -26.73 -0.08 0.73 16 3 C -0.15 -1.38 9.56 37.16 0.36 -1.02 16 4 O -0.26 -3.73 7.86 -39.74 -0.31 -4.04 16 5 C 0.38 4.81 7.47 -16.61 -0.12 4.68 16 6 N -0.55 -5.70 8.64 -12.98 -0.11 -5.81 16 7 C 0.17 1.18 11.17 -17.49 -0.20 0.99 16 8 C -0.22 -1.37 10.09 -39.50 -0.40 -1.77 16 9 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 10 C -0.21 -2.51 5.90 -104.69 -0.62 -3.12 16 11 C 0.56 8.18 7.77 -12.47 -0.10 8.08 16 12 O -0.51 -9.71 15.19 -16.48 -0.25 -9.96 16 13 N -0.73 -8.75 5.51 -61.36 -0.34 -9.09 16 14 C 0.12 1.64 5.54 -4.05 -0.02 1.62 16 15 C -0.12 -1.46 4.72 -26.73 -0.13 -1.59 16 16 C -0.10 -1.59 2.95 -88.78 -0.26 -1.85 16 17 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.12 -1.88 6.54 -24.58 -0.16 -2.04 16 19 C 0.13 2.59 7.23 -2.53 -0.02 2.57 16 20 N -0.61 -15.15 3.22 -169.84 -0.55 -15.70 16 21 C -0.24 -7.08 10.56 -15.06 -0.16 -7.24 16 22 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 23 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 24 N -0.91 -28.81 13.97 55.49 0.78 -28.03 16 25 Si 0.89 24.00 24.39 -169.99 -4.15 19.85 16 26 H -0.28 -7.54 6.83 56.52 0.39 -7.15 16 27 H -0.30 -8.32 7.11 56.52 0.40 -7.92 16 28 H -0.28 -7.49 6.87 56.52 0.39 -7.11 16 29 C 0.12 2.72 4.01 -2.90 -0.01 2.71 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.88 6.99 -51.93 -0.36 0.51 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 39 H 0.14 0.69 6.51 -52.49 -0.34 0.34 16 40 H 0.40 3.28 6.57 -40.82 -0.27 3.01 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.30 7.58 -51.93 -0.39 0.90 16 43 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.00 8.05 -51.93 -0.42 0.59 16 46 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.26 7.93 8.31 -40.82 -0.34 7.60 16 50 H 0.03 0.61 3.55 -51.93 -0.18 0.43 16 51 H 0.04 0.93 7.73 -51.93 -0.40 0.53 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -37.52 405.99 -9.14 -46.66 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.29 Total: -1.58 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.04 Total: 1.58 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.22 Total: -58.63 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.56 Total: -14.01 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -4.15 Total: 19.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.52 -9.14 -46.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713742328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.990 kcal (2) G-P(sol) polarization free energy of solvation -37.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds