Wall clock time and date at job start Wed Apr 1 2020 04:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 O 1.42894 * 109.46954 * 119.99631 * 2 1 3 5 5 C 1.35427 * 117.00072 * 90.00475 * 4 2 1 6 6 N 1.32242 * 119.79775 * 359.72555 * 5 4 2 7 7 C 1.31879 * 121.79655 * 179.70854 * 6 5 4 8 8 C 1.38357 * 121.18813 * 0.57102 * 7 6 5 9 9 C 1.38336 * 119.45913 * 359.72242 * 8 7 6 10 10 C 1.39992 * 118.34548 * 359.97438 * 9 8 7 11 11 C 1.47527 * 120.59507 * 180.02562 * 10 9 8 12 12 O 1.21583 * 120.00310 * 179.97438 * 11 10 9 13 13 N 1.34779 * 119.99881 * 359.97438 * 11 10 9 14 14 C 1.46493 * 120.00071 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47173 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.64410 * 305.70282 * 16 15 14 18 18 C 1.55156 * 110.72008 * 182.55775 * 16 15 14 19 19 C 1.54912 * 101.58488 * 206.13829 * 18 16 15 20 20 N 1.47423 * 104.82844 * 37.00981 * 19 18 16 21 21 C 1.36939 * 125.64215 * 155.90517 * 20 19 18 22 22 H 1.07993 * 120.00304 * 342.04848 * 21 20 19 23 23 C 1.38812 * 119.99315 * 162.04584 * 21 20 19 24 24 N 1.31622 * 119.99458 * 156.25441 * 23 21 20 25 25 Si 1.86801 * 120.00425 * 336.25065 * 23 21 20 26 26 H 1.48494 * 109.47093 * 84.67322 * 25 23 21 27 27 H 1.48500 * 109.46757 * 204.66932 * 25 23 21 28 28 H 1.48497 * 109.47141 * 324.67116 * 25 23 21 29 29 C 1.47318 * 108.73717 * 335.71637 * 20 19 18 30 30 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47368 * 300.00272 * 1 2 3 32 32 H 1.08998 * 109.46906 * 60.00611 * 1 2 3 33 33 H 1.08993 * 109.47764 * 240.00095 * 2 1 3 34 34 H 1.09000 * 109.47450 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46939 * 299.99913 * 3 2 1 36 36 H 1.09007 * 109.46798 * 59.99412 * 3 2 1 37 37 H 1.07999 * 119.40344 * 180.29167 * 7 6 5 38 38 H 1.08001 * 120.27014 * 179.70066 * 8 7 6 39 39 H 1.07996 * 120.82758 * 179.97438 * 9 8 7 40 40 H 0.97006 * 119.99888 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47128 * 300.00230 * 14 13 11 42 42 H 1.08999 * 109.47375 * 59.99841 * 14 13 11 43 43 H 1.08998 * 109.47138 * 299.99867 * 15 14 13 44 44 H 1.09000 * 109.47079 * 60.00565 * 15 14 13 45 45 H 1.08996 * 111.00724 * 324.21458 * 18 16 15 46 46 H 1.09008 * 111.00440 * 88.02544 * 18 16 15 47 47 H 1.09000 * 110.36503 * 155.85193 * 19 18 16 48 48 H 1.09007 * 110.36262 * 278.06355 * 19 18 16 49 49 H 0.97001 * 119.99779 * 180.02562 * 24 23 21 50 50 H 1.08999 * 110.06069 * 241.87031 * 29 20 19 51 51 H 1.08998 * 109.84551 * 120.61514 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2113 -2.0084 1.0655 6 7 1.9649 -2.6263 -0.0774 7 6 2.1559 -3.9232 -0.2214 8 6 2.6144 -4.7007 0.8271 9 6 2.8830 -4.1071 2.0475 10 6 2.6788 -2.7281 2.1751 11 6 2.9500 -2.0441 3.4538 12 8 2.7693 -0.8458 3.5526 13 7 3.3979 -2.7475 4.5126 14 6 3.6677 -2.0683 5.7822 15 6 4.1613 -3.0874 6.8111 16 6 4.4437 -2.3778 8.1369 17 1 5.1308 -1.5449 7.9882 18 6 5.0075 -3.3745 9.1838 19 6 4.5805 -2.7039 10.5133 20 7 3.2515 -2.1293 10.2362 21 6 2.2894 -1.8561 11.1717 22 1 2.3411 -2.3131 12.1488 23 6 1.2478 -0.9917 10.8639 24 7 0.1107 -1.0709 11.5220 25 14 1.4600 0.2839 9.5158 26 1 1.1577 -0.3324 8.1991 27 1 0.5314 1.4175 9.7566 28 1 2.8593 0.7808 9.5203 29 6 3.1307 -1.8931 8.7871 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.9464 -4.3874 -1.1738 38 1 2.7610 -5.7624 0.6941 39 1 3.2413 -4.6930 2.8809 40 1 3.5417 -3.7036 4.4339 41 1 4.4312 -1.3052 5.6309 42 1 2.7529 -1.5999 6.1453 43 1 3.3975 -3.8502 6.9623 44 1 5.0761 -3.5561 6.4483 45 1 4.5469 -4.3565 9.0760 46 1 6.0930 -3.4444 9.1117 47 1 4.5147 -3.4463 11.3086 48 1 5.2859 -1.9187 10.7857 49 1 -0.6173 -0.4671 11.3067 50 1 2.9908 -0.8299 8.5919 51 1 2.2887 -2.4592 8.3888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713742328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:50 Heat of formation + Delta-G solvation = -40.179764 kcal Electronic energy + Delta-G solvation = -30510.432351 eV Core-core repulsion = 26409.843246 eV Total energy + Delta-G solvation = -4100.589105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.01316 -40.43169 -39.61259 -39.22427 -36.53050 -34.88367 -34.28573 -33.93216 -32.85604 -31.41452 -30.75936 -28.65783 -28.26050 -26.57878 -25.59090 -24.77704 -23.68425 -22.42054 -21.93588 -21.79670 -21.07449 -19.66522 -19.03080 -18.61538 -18.03076 -17.77545 -16.98317 -16.73803 -16.48743 -16.18591 -15.98123 -15.61497 -15.49121 -15.35972 -15.14007 -14.86991 -14.67359 -14.28357 -14.20676 -14.04063 -13.89664 -13.59059 -13.44514 -13.34270 -13.26304 -13.19491 -12.93441 -12.92896 -12.74064 -12.42830 -12.16467 -11.98309 -11.83325 -11.82090 -11.77333 -11.45834 -11.21328 -11.17610 -11.05128 -10.79581 -10.59071 -10.20632 -9.54234 -9.09431 -8.25228 -5.46825 -0.36138 0.23447 1.22930 1.29471 1.37466 1.82136 1.96901 2.04358 2.33340 2.78552 2.98086 3.20978 3.34997 3.62695 3.67074 3.74096 3.83316 3.87714 3.95428 3.95738 4.00895 4.13777 4.18093 4.22269 4.25655 4.48392 4.48903 4.58439 4.59911 4.60567 4.73637 4.74453 4.75750 4.80709 4.85590 4.88129 5.00157 5.04913 5.06998 5.12889 5.13739 5.16379 5.20396 5.28233 5.34849 5.45930 5.51252 5.66841 6.05262 6.25215 6.47970 6.74085 6.74750 7.19155 7.51445 8.09111 8.95292 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.002539 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.793802 B =11025.860858 C =12387.313069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.146 4.146 4 O -0.298 6.298 5 C 0.349 3.651 6 N -0.560 5.560 7 C 0.163 3.837 8 C -0.206 4.206 9 C -0.001 4.001 10 C -0.240 4.240 11 C 0.553 3.447 12 O -0.570 6.570 13 N -0.709 5.709 14 C 0.119 3.881 15 C -0.101 4.101 16 C -0.090 4.090 17 H 0.086 0.914 18 C -0.104 4.104 19 C 0.118 3.882 20 N -0.632 5.632 21 C -0.229 4.229 22 H 0.067 0.933 23 C -0.033 4.033 24 N -0.952 5.952 25 Si 0.943 3.057 26 H -0.285 1.285 27 H -0.310 1.310 28 H -0.277 1.277 29 C 0.115 3.885 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.202 0.798 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.417 0.583 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.110 0.890 47 H 0.048 0.952 48 H 0.028 0.972 49 H 0.262 0.738 50 H 0.000 1.000 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.618 -11.259 -30.712 34.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.204 6.204 5 C 0.170 3.830 6 N -0.284 5.284 7 C 0.006 3.994 8 C -0.226 4.226 9 C -0.027 4.027 10 C -0.246 4.246 11 C 0.341 3.659 12 O -0.450 6.450 13 N -0.363 5.363 14 C -0.005 4.005 15 C -0.139 4.139 16 C -0.110 4.110 17 H 0.104 0.896 18 C -0.142 4.142 19 C -0.006 4.006 20 N -0.359 5.359 21 C -0.358 4.358 22 H 0.085 0.915 23 C -0.228 4.228 24 N -0.599 5.599 25 Si 0.776 3.224 26 H -0.212 1.212 27 H -0.239 1.239 28 H -0.203 1.203 29 C -0.009 4.009 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.218 0.782 38 H 0.205 0.795 39 H 0.195 0.805 40 H 0.255 0.745 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.097 0.903 44 H 0.134 0.866 45 H 0.100 0.900 46 H 0.128 0.872 47 H 0.066 0.934 48 H 0.046 0.954 49 H 0.071 0.929 50 H 0.018 0.982 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 10.029 -9.614 -30.988 33.960 hybrid contribution -0.523 0.669 0.630 1.057 sum 9.506 -8.945 -30.358 33.045 Atomic orbital electron populations 1.22170 0.94239 1.02257 1.03210 1.22641 0.95069 0.93584 0.87292 1.21907 1.01629 0.93225 1.03585 1.86576 1.78522 1.16070 1.39220 1.20125 0.88546 0.85048 0.89312 1.67482 1.23331 1.14481 1.23144 1.23484 0.88374 0.86673 1.00834 1.22409 1.03719 1.03903 0.92521 1.22078 0.90503 0.90282 0.99830 1.20051 1.14964 0.96125 0.93491 1.18325 0.76861 0.86472 0.84243 1.90825 1.53127 1.16489 1.84545 1.45666 1.67421 1.12695 1.10512 1.21341 0.99686 0.96342 0.83125 1.21697 1.03649 0.96954 0.91618 1.22110 0.94828 0.99238 0.94791 0.89571 1.22739 1.02005 0.97744 0.91710 1.21931 0.84958 0.95718 0.98003 1.45112 1.14158 1.74640 1.01996 1.18697 1.00878 1.20639 0.95594 0.91526 1.25462 0.95783 1.01056 1.00476 1.69955 1.03304 1.40094 1.46589 0.86000 0.76346 0.80332 0.79767 1.21233 1.23895 1.20343 1.21910 0.98209 0.96210 0.84611 0.93060 0.93364 0.88475 0.88816 0.92415 0.87677 0.93003 0.78184 0.79543 0.80546 0.74477 0.91754 0.95168 0.90331 0.86553 0.90030 0.87162 0.93382 0.95384 0.92935 0.98243 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.53 71.98 0.69 -2.53 16 2 C 0.07 1.56 3.11 30.60 0.10 1.65 16 3 C -0.15 -2.82 9.56 71.98 0.69 -2.13 16 4 O -0.30 -9.04 7.86 -66.41 -0.52 -9.56 16 5 C 0.35 9.03 7.47 85.13 0.64 9.67 16 6 N -0.56 -11.04 8.64 -307.99 -2.66 -13.70 16 7 C 0.16 1.77 11.17 84.71 0.95 2.72 16 8 C -0.21 -1.57 10.09 22.32 0.23 -1.34 16 9 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 10 C -0.24 -5.59 5.90 -19.91 -0.12 -5.70 16 11 C 0.55 16.45 7.77 86.69 0.67 17.12 16 12 O -0.57 -23.11 15.19 16.84 0.26 -22.85 16 13 N -0.71 -16.06 5.51 -466.30 -2.57 -18.62 16 14 C 0.12 3.26 5.54 86.38 0.48 3.74 16 15 C -0.10 -2.16 4.72 30.60 0.14 -2.02 16 16 C -0.09 -2.63 2.95 -9.61 -0.03 -2.65 16 17 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.10 -2.67 6.54 31.99 0.21 -2.46 16 19 C 0.12 4.39 7.23 86.86 0.63 5.02 16 20 N -0.63 -31.23 3.22 -691.24 -2.22 -33.46 16 21 C -0.23 -13.71 10.56 84.03 0.89 -12.82 16 22 H 0.07 4.23 8.06 -2.91 -0.02 4.20 16 23 C -0.03 -2.06 5.43 84.86 0.46 -1.60 16 24 N -0.95 -62.69 13.97 21.65 0.30 -62.39 16 25 Si 0.94 51.96 24.39 68.60 1.67 53.63 16 26 H -0.29 -15.46 6.83 99.48 0.68 -14.78 16 27 H -0.31 -17.15 7.11 99.48 0.71 -16.44 16 28 H -0.28 -14.85 6.87 99.48 0.68 -14.16 16 29 C 0.12 5.04 4.01 86.67 0.35 5.39 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.90 6.99 -2.39 -0.02 1.88 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.20 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.19 -0.13 8.06 -2.91 -0.02 -0.16 16 39 H 0.18 0.81 6.51 -2.91 -0.02 0.79 16 40 H 0.42 5.47 6.57 -92.70 -0.61 4.87 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.03 1.09 7.58 -2.39 -0.02 1.07 16 43 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 44 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 46 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 50 H 0.00 0.01 3.55 -2.39 -0.01 0.00 16 51 H 0.02 1.10 7.73 -2.39 -0.02 1.08 16 Total: -1.00 -90.83 405.99 1.70 -89.12 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.27 Total: 5.57 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 7.18 Total: 12.26 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -7.15 Total: -128.17 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.27 Total: -32.42 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 1.67 Total: 53.63 kcal Total: -90.83 1.70 -89.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713742328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.943 kcal (2) G-P(sol) polarization free energy of solvation -90.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds