Wall clock time and date at job start Wed Apr 1 2020 04:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47219 * 2 1 4 4 O 1.42904 * 109.47166 * 119.99938 * 2 1 3 5 5 C 1.35917 * 117.00002 * 153.14954 * 4 2 1 6 6 C 1.38850 * 120.40645 * 184.66838 * 5 4 2 7 7 N 1.31885 * 121.00243 * 179.97438 * 6 5 4 8 8 C 1.31686 * 121.93738 * 359.69332 * 7 6 5 9 9 C 1.39521 * 120.69063 * 0.59582 * 8 7 6 10 10 C 1.47859 * 120.52707 * 179.70021 * 9 8 7 11 11 O 1.21552 * 119.99513 * 179.72073 * 10 9 8 12 12 N 1.34772 * 120.00220 * 359.71906 * 10 9 8 13 13 C 1.46496 * 119.99882 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47212 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47387 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47435 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00187 * 269.99897 * 16 15 14 18 18 H 1.08000 * 119.99856 * 143.51196 * 17 16 15 19 19 C 1.38810 * 119.99960 * 323.51155 * 17 16 15 20 20 N 1.31622 * 120.00044 * 161.04975 * 19 17 16 21 21 Si 1.86800 * 120.00074 * 341.05289 * 19 17 16 22 22 H 1.48500 * 109.47108 * 95.22854 * 21 19 17 23 23 H 1.48493 * 109.47360 * 215.23140 * 21 19 17 24 24 H 1.48502 * 109.46937 * 335.23140 * 21 19 17 25 25 C 1.46501 * 119.99851 * 89.99623 * 16 15 14 26 26 C 1.53005 * 117.50042 * 183.39863 * 25 16 15 27 27 C 1.53006 * 117.49966 * 114.73994 * 25 16 15 28 28 C 1.38840 * 120.40527 * 4.64480 * 5 4 2 29 29 H 1.09002 * 109.47485 * 299.99670 * 1 2 3 30 30 H 1.08995 * 109.47253 * 60.00132 * 1 2 3 31 31 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47081 * 239.99817 * 2 1 3 33 33 H 1.09005 * 109.46951 * 299.99910 * 3 2 1 34 34 H 1.08997 * 109.46947 * 59.99474 * 3 2 1 35 35 H 1.08991 * 109.47561 * 179.97438 * 3 2 1 36 36 H 1.08001 * 119.50228 * 359.95236 * 6 5 4 37 37 H 1.07997 * 119.64947 * 180.31538 * 8 7 6 38 38 H 0.96998 * 119.99799 * 0.02562 * 12 10 9 39 39 H 1.09006 * 109.47485 * 60.00170 * 13 12 10 40 40 H 1.09005 * 109.47644 * 300.00311 * 13 12 10 41 41 H 1.08997 * 109.47294 * 60.00084 * 14 13 12 42 42 H 1.09000 * 109.46824 * 300.00126 * 14 13 12 43 43 H 1.09003 * 109.47457 * 59.99296 * 15 14 13 44 44 H 1.09005 * 109.47249 * 300.00000 * 15 14 13 45 45 H 0.96996 * 119.99992 * 179.97438 * 20 19 17 46 46 H 1.08996 * 115.55233 * 329.06347 * 25 16 15 47 47 H 1.09008 * 117.49536 * 359.97438 * 26 25 16 48 48 H 1.09000 * 117.50173 * 145.01800 * 26 25 16 49 49 H 1.09001 * 117.49527 * 214.97665 * 27 25 16 50 50 H 1.08992 * 117.49703 * 359.97275 * 27 25 16 51 51 H 1.08004 * 120.88246 * 0.04090 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2307 -1.2581 1.0852 6 6 3.7209 -2.0129 2.1425 7 7 4.9071 -2.5857 2.0758 8 6 5.6747 -2.4760 1.0114 9 6 5.2595 -1.7302 -0.0922 10 6 6.1271 -1.6040 -1.2828 11 8 5.7536 -0.9560 -2.2410 12 7 7.3321 -2.2073 -1.3056 13 6 8.1919 -2.0818 -2.4850 14 6 9.4913 -2.8556 -2.2536 15 6 10.3896 -2.7240 -3.4851 16 7 11.6340 -3.4644 -3.2633 17 6 12.7110 -2.8386 -2.6945 18 1 13.3526 -3.3793 -2.0144 19 6 12.9782 -1.5094 -2.9919 20 7 13.7523 -0.8000 -2.1981 21 14 12.2391 -0.7272 -4.5188 22 1 10.9850 -0.0199 -4.1550 23 1 13.2049 0.2424 -5.0952 24 1 11.9397 -1.7823 -5.5199 25 6 11.7263 -4.8745 -3.6500 26 6 13.0244 -5.6141 -3.3201 27 6 12.7045 -5.2376 -4.7690 28 6 4.0063 -1.1082 -0.0565 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1299 1.4425 0.0005 36 1 3.1221 -2.1326 3.0333 37 1 6.6376 -2.9647 0.9945 38 1 7.6299 -2.7247 -0.5411 39 1 8.4207 -1.0301 -2.6577 40 1 7.6769 -2.4891 -3.3552 41 1 9.2622 -3.9072 -2.0813 42 1 10.0064 -2.4487 -1.3834 43 1 10.6187 -1.6723 -3.6571 44 1 9.8747 -3.1307 -4.3556 45 1 13.9392 0.1287 -2.4062 46 1 10.7963 -5.4398 -3.5914 47 1 13.8101 -5.0513 -2.8158 48 1 12.9485 -6.6660 -3.0450 49 1 12.4181 -6.0422 -5.4464 50 1 13.2791 -4.4274 -5.2177 51 1 3.6519 -0.5268 -0.8950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713767646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:56 Heat of formation + Delta-G solvation = 11.358758 kcal Electronic energy + Delta-G solvation = -29783.975836 eV Core-core repulsion = 25685.621608 eV Total energy + Delta-G solvation = -4098.354227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.28072 -39.71534 -38.60729 -37.45575 -35.56546 -33.90674 -33.70521 -32.74076 -31.90667 -30.75161 -29.64055 -27.79236 -25.99214 -24.56767 -24.26406 -23.58296 -21.77583 -21.57901 -21.27314 -20.83851 -19.66561 -18.93758 -17.36750 -17.20692 -16.86087 -16.54955 -16.02143 -15.84245 -15.59863 -15.32513 -15.22825 -14.83125 -14.54988 -14.12488 -13.88674 -13.77241 -13.61364 -13.36230 -13.01302 -12.84825 -12.75259 -12.64094 -12.47627 -12.33354 -12.24041 -12.18576 -11.50794 -11.26188 -11.22846 -11.12662 -10.85773 -10.74058 -10.59229 -10.38084 -10.12473 -10.02500 -9.79823 -9.71600 -9.46374 -9.42585 -9.11389 -8.83883 -8.58813 -6.83178 -6.05723 -3.49911 0.29209 0.82960 2.58770 2.66574 2.98852 3.24961 3.42808 3.46820 3.51815 3.99981 4.18447 4.28920 4.37169 4.43692 4.45450 4.55428 4.60171 4.62315 4.67753 4.81322 5.01967 5.07131 5.20948 5.23215 5.26012 5.26731 5.39068 5.43490 5.52372 5.59474 5.65100 5.70492 5.72141 5.74340 5.91926 5.92557 5.93607 6.02427 6.09239 6.23597 6.38848 6.43486 6.45535 6.62951 6.78348 6.80994 6.88743 7.07350 7.37905 7.48851 7.97635 8.04217 8.31614 8.90343 9.62732 10.00822 11.08967 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.002026 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.863645 B =13814.358330 C =14410.489112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.181 4.181 4 O -0.302 6.302 5 C 0.076 3.924 6 C 0.094 3.906 7 N -0.446 5.446 8 C 0.094 3.906 9 C -0.141 4.141 10 C 0.558 3.442 11 O -0.537 6.537 12 N -0.714 5.714 13 C 0.117 3.883 14 C -0.147 4.147 15 C 0.144 3.856 16 N -0.574 5.574 17 C -0.269 4.269 18 H 0.085 0.915 19 C 0.036 3.964 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.284 1.284 23 H -0.302 1.302 24 H -0.267 1.267 25 C 0.121 3.879 26 C -0.188 4.188 27 C -0.224 4.224 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.264 0.736 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.557 -1.731 5.449 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 C -0.238 4.238 4 O -0.214 6.214 5 C 0.029 3.971 6 C -0.065 4.065 7 N -0.154 5.154 8 C -0.064 4.064 9 C -0.146 4.146 10 C 0.343 3.657 11 O -0.415 6.415 12 N -0.365 5.365 13 C -0.006 4.006 14 C -0.188 4.188 15 C 0.018 3.982 16 N -0.292 5.292 17 C -0.397 4.397 18 H 0.103 0.897 19 C -0.165 4.165 20 N -0.541 5.541 21 Si 0.711 3.289 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.192 1.192 25 C 0.012 3.988 26 C -0.227 4.227 27 C -0.265 4.265 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.186 0.814 37 H 0.181 0.819 38 H 0.237 0.763 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.121 0.879 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.107 0.893 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.547 -1.547 5.649 25.236 hybrid contribution -0.230 0.934 -1.433 1.726 sum -24.776 -0.613 4.216 25.140 Atomic orbital electron populations 1.21861 0.91984 1.03326 1.03330 1.22580 0.95777 0.92918 0.87146 1.22375 1.02353 0.95593 1.03493 1.86157 1.29635 1.66873 1.38774 1.20058 0.86558 0.95250 0.95284 1.22441 0.92661 0.93792 0.97572 1.67761 1.03846 1.18449 1.25389 1.22923 0.99469 0.96007 0.88024 1.20916 0.95932 1.01194 0.96545 1.18021 0.81542 0.79677 0.86453 1.90777 1.73603 1.40859 1.36223 1.46024 1.17306 1.52682 1.20537 1.21552 0.90631 1.01658 0.86799 1.22416 0.93662 0.99583 1.03117 1.21042 0.86503 0.96691 0.93950 1.43653 1.09262 1.06198 1.70097 1.18766 1.05453 0.94764 1.20751 0.89725 1.25454 0.96715 0.97125 0.97229 1.69813 1.39520 1.08464 1.36265 0.86895 0.77357 0.78854 0.85765 1.21225 1.23079 1.19222 1.21136 0.91958 0.86471 0.99237 1.23081 1.01890 0.98898 0.98793 1.23389 1.08468 1.02962 0.91681 1.21872 0.93614 1.00156 0.98331 0.91274 0.90240 0.91530 0.90543 0.90564 0.91186 0.91781 0.81444 0.81901 0.76289 0.91233 0.91447 0.91838 0.90281 0.92752 0.93606 0.92582 0.89060 0.87881 0.90453 0.90803 0.89288 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.56 37.16 0.36 -0.40 16 2 C 0.07 0.51 2.84 -26.73 -0.08 0.43 16 3 C -0.18 -1.21 9.25 37.16 0.34 -0.87 16 4 O -0.30 -2.69 9.80 -19.48 -0.19 -2.88 16 5 C 0.08 0.75 6.63 -39.13 -0.26 0.49 16 6 C 0.09 0.90 11.13 -17.30 -0.19 0.71 16 7 N -0.45 -4.85 10.34 -12.80 -0.13 -4.99 16 8 C 0.09 0.98 10.71 -17.14 -0.18 0.80 16 9 C -0.14 -1.64 5.89 -104.84 -0.62 -2.26 16 10 C 0.56 7.77 7.78 -12.33 -0.10 7.67 16 11 O -0.54 -9.22 16.42 5.32 0.09 -9.13 16 12 N -0.71 -9.15 5.51 -61.24 -0.34 -9.49 16 13 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 14 C -0.15 -2.42 5.65 -26.73 -0.15 -2.57 16 15 C 0.14 2.88 4.50 -4.05 -0.02 2.86 16 16 N -0.57 -12.78 2.46 -165.66 -0.41 -13.19 16 17 C -0.27 -7.10 9.08 -15.06 -0.14 -7.23 16 18 H 0.09 2.42 6.75 -52.49 -0.35 2.07 16 19 C 0.04 0.99 5.37 -17.43 -0.09 0.89 16 20 N -0.90 -26.66 13.97 55.49 0.78 -25.89 16 21 Si 0.88 21.80 24.77 -169.99 -4.21 17.59 16 22 H -0.28 -6.81 6.72 56.52 0.38 -6.43 16 23 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 24 H -0.27 -6.51 7.08 56.52 0.40 -6.11 16 25 C 0.12 2.32 6.56 -67.92 -0.45 1.87 16 26 C -0.19 -3.48 9.80 -26.69 -0.26 -3.74 16 27 C -0.22 -4.16 10.36 -26.69 -0.28 -4.44 16 28 C -0.11 -1.23 7.98 -38.72 -0.31 -1.54 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.55 6.18 -51.93 -0.32 0.23 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.52 7.21 -51.93 -0.37 0.14 16 36 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.16 1.33 6.42 -52.49 -0.34 1.00 16 38 H 0.40 4.10 6.53 -40.82 -0.27 3.84 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.05 1.22 2.84 -51.93 -0.15 1.07 16 44 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.10 2.16 6.40 -51.92 -0.33 1.83 16 48 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 51 H 0.15 1.62 5.37 -52.48 -0.28 1.34 16 LS Contribution 410.92 15.07 6.19 6.19 Total: -1.00 -32.18 410.92 -8.57 -40.76 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.91 Total: 6.60 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.44 Total: -5.57 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.10 Total: -53.55 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.10 Total: -12.01 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.21 Total: 17.59 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.18 -8.57 -40.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713767646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.117 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds