Wall clock time and date at job start Wed Apr 1 2020 04:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47219 * 2 1 4 4 O 1.42904 * 109.47166 * 119.99938 * 2 1 3 5 5 C 1.35917 * 117.00002 * 153.14954 * 4 2 1 6 6 C 1.38850 * 120.40645 * 184.66838 * 5 4 2 7 7 N 1.31885 * 121.00243 * 179.97438 * 6 5 4 8 8 C 1.31686 * 121.93738 * 359.69332 * 7 6 5 9 9 C 1.39521 * 120.69063 * 0.59582 * 8 7 6 10 10 C 1.47859 * 120.52707 * 179.70021 * 9 8 7 11 11 O 1.21552 * 119.99513 * 179.72073 * 10 9 8 12 12 N 1.34772 * 120.00220 * 359.71906 * 10 9 8 13 13 C 1.46496 * 119.99882 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47212 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47387 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47435 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00187 * 269.99897 * 16 15 14 18 18 H 1.08000 * 119.99856 * 143.51196 * 17 16 15 19 19 C 1.38810 * 119.99960 * 323.51155 * 17 16 15 20 20 N 1.31622 * 120.00044 * 161.04975 * 19 17 16 21 21 Si 1.86800 * 120.00074 * 341.05289 * 19 17 16 22 22 H 1.48500 * 109.47108 * 95.22854 * 21 19 17 23 23 H 1.48493 * 109.47360 * 215.23140 * 21 19 17 24 24 H 1.48502 * 109.46937 * 335.23140 * 21 19 17 25 25 C 1.46501 * 119.99851 * 89.99623 * 16 15 14 26 26 C 1.53005 * 117.50042 * 183.39863 * 25 16 15 27 27 C 1.53006 * 117.49966 * 114.73994 * 25 16 15 28 28 C 1.38840 * 120.40527 * 4.64480 * 5 4 2 29 29 H 1.09002 * 109.47485 * 299.99670 * 1 2 3 30 30 H 1.08995 * 109.47253 * 60.00132 * 1 2 3 31 31 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47081 * 239.99817 * 2 1 3 33 33 H 1.09005 * 109.46951 * 299.99910 * 3 2 1 34 34 H 1.08997 * 109.46947 * 59.99474 * 3 2 1 35 35 H 1.08991 * 109.47561 * 179.97438 * 3 2 1 36 36 H 1.08001 * 119.50228 * 359.95236 * 6 5 4 37 37 H 1.07997 * 119.64947 * 180.31538 * 8 7 6 38 38 H 0.96998 * 119.99799 * 0.02562 * 12 10 9 39 39 H 1.09006 * 109.47485 * 60.00170 * 13 12 10 40 40 H 1.09005 * 109.47644 * 300.00311 * 13 12 10 41 41 H 1.08997 * 109.47294 * 60.00084 * 14 13 12 42 42 H 1.09000 * 109.46824 * 300.00126 * 14 13 12 43 43 H 1.09003 * 109.47457 * 59.99296 * 15 14 13 44 44 H 1.09005 * 109.47249 * 300.00000 * 15 14 13 45 45 H 0.96996 * 119.99992 * 179.97438 * 20 19 17 46 46 H 1.08996 * 115.55233 * 329.06347 * 25 16 15 47 47 H 1.09008 * 117.49536 * 359.97438 * 26 25 16 48 48 H 1.09000 * 117.50173 * 145.01800 * 26 25 16 49 49 H 1.09001 * 117.49527 * 214.97665 * 27 25 16 50 50 H 1.08992 * 117.49703 * 359.97275 * 27 25 16 51 51 H 1.08004 * 120.88246 * 0.04090 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2307 -1.2581 1.0852 6 6 3.7209 -2.0129 2.1425 7 7 4.9071 -2.5857 2.0758 8 6 5.6747 -2.4760 1.0114 9 6 5.2595 -1.7302 -0.0922 10 6 6.1271 -1.6040 -1.2828 11 8 5.7536 -0.9560 -2.2410 12 7 7.3321 -2.2073 -1.3056 13 6 8.1919 -2.0818 -2.4850 14 6 9.4913 -2.8556 -2.2536 15 6 10.3896 -2.7240 -3.4851 16 7 11.6340 -3.4644 -3.2633 17 6 12.7110 -2.8386 -2.6945 18 1 13.3526 -3.3793 -2.0144 19 6 12.9782 -1.5094 -2.9919 20 7 13.7523 -0.8000 -2.1981 21 14 12.2391 -0.7272 -4.5188 22 1 10.9850 -0.0199 -4.1550 23 1 13.2049 0.2424 -5.0952 24 1 11.9397 -1.7823 -5.5199 25 6 11.7263 -4.8745 -3.6500 26 6 13.0244 -5.6141 -3.3201 27 6 12.7045 -5.2376 -4.7690 28 6 4.0063 -1.1082 -0.0565 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1299 1.4425 0.0005 36 1 3.1221 -2.1326 3.0333 37 1 6.6376 -2.9647 0.9945 38 1 7.6299 -2.7247 -0.5411 39 1 8.4207 -1.0301 -2.6577 40 1 7.6769 -2.4891 -3.3552 41 1 9.2622 -3.9072 -2.0813 42 1 10.0064 -2.4487 -1.3834 43 1 10.6187 -1.6723 -3.6571 44 1 9.8747 -3.1307 -4.3556 45 1 13.9392 0.1287 -2.4062 46 1 10.7963 -5.4398 -3.5914 47 1 13.8101 -5.0513 -2.8158 48 1 12.9485 -6.6660 -3.0450 49 1 12.4181 -6.0422 -5.4464 50 1 13.2791 -4.4274 -5.2177 51 1 3.6519 -0.5268 -0.8950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713767646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:55 Heat of formation + Delta-G solvation = -9.353739 kcal Electronic energy + Delta-G solvation = -29784.873997 eV Core-core repulsion = 25685.621608 eV Total energy + Delta-G solvation = -4099.252389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09271 -40.68883 -39.41993 -39.05959 -36.84559 -35.34981 -34.40749 -33.89827 -33.44529 -31.86633 -30.89126 -28.26049 -27.39622 -26.03900 -25.04407 -24.93195 -23.18235 -22.70315 -22.24320 -21.81102 -21.38129 -19.80826 -18.50298 -18.11942 -17.93223 -17.76331 -17.48396 -17.06149 -16.79378 -16.58305 -16.48376 -15.60113 -15.50497 -15.36126 -15.13627 -14.92915 -14.61737 -14.46009 -14.16920 -14.02300 -13.99686 -13.79569 -13.57644 -13.37871 -13.15653 -12.91682 -12.75596 -12.66701 -12.51219 -12.44072 -12.06791 -12.05800 -11.81063 -11.79453 -11.59392 -11.49595 -11.19380 -10.99698 -10.95447 -10.68463 -10.62207 -10.24061 -9.59743 -8.66503 -8.19617 -5.58314 -0.56220 0.03888 1.26630 1.38934 1.48052 1.66089 1.89344 1.98367 2.38209 2.66437 3.00393 3.17192 3.20745 3.36969 3.44884 3.64484 3.67012 3.74592 3.82264 3.91320 4.03918 4.07445 4.10310 4.31202 4.32911 4.35027 4.41446 4.49361 4.55303 4.62378 4.68194 4.69916 4.72067 4.77242 4.80228 4.83527 4.85762 4.96588 5.04486 5.15232 5.18395 5.20929 5.23493 5.25968 5.33832 5.41934 5.55665 5.95187 6.09401 6.20192 6.35325 6.69893 6.98044 6.99889 7.63758 8.02423 8.99316 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.002026 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.863645 B =13814.358330 C =14410.489112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 C -0.179 4.179 4 O -0.305 6.305 5 C 0.077 3.923 6 C 0.099 3.901 7 N -0.460 5.460 8 C 0.097 3.903 9 C -0.154 4.154 10 C 0.560 3.440 11 O -0.575 6.575 12 N -0.705 5.705 13 C 0.126 3.874 14 C -0.129 4.129 15 C 0.135 3.865 16 N -0.587 5.587 17 C -0.242 4.242 18 H 0.052 0.948 19 C -0.022 4.022 20 N -0.950 5.950 21 Si 0.939 3.061 22 H -0.275 1.275 23 H -0.317 1.317 24 H -0.258 1.258 25 C 0.108 3.892 26 C -0.187 4.187 27 C -0.217 4.217 28 C -0.118 4.118 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.193 0.807 37 H 0.183 0.817 38 H 0.415 0.585 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.261 0.739 46 H 0.131 0.869 47 H 0.067 0.933 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.057 0.943 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.350 -3.621 5.188 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 C -0.236 4.236 4 O -0.218 6.218 5 C 0.029 3.971 6 C -0.060 4.060 7 N -0.168 5.168 8 C -0.060 4.060 9 C -0.159 4.159 10 C 0.347 3.653 11 O -0.455 6.455 12 N -0.357 5.357 13 C 0.002 3.998 14 C -0.169 4.169 15 C 0.010 3.990 16 N -0.307 5.307 17 C -0.372 4.372 18 H 0.069 0.931 19 C -0.218 4.218 20 N -0.595 5.595 21 Si 0.770 3.230 22 H -0.203 1.203 23 H -0.247 1.247 24 H -0.182 1.182 25 C 0.001 3.999 26 C -0.225 4.225 27 C -0.258 4.258 28 C -0.145 4.145 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.210 0.790 37 H 0.200 0.800 38 H 0.253 0.747 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.149 0.851 47 H 0.085 0.915 48 H 0.132 0.868 49 H 0.129 0.871 50 H 0.076 0.924 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -27.367 -3.487 5.390 28.110 hybrid contribution 0.590 1.427 -1.287 2.010 sum -26.777 -2.060 4.103 27.167 Atomic orbital electron populations 1.21878 0.90240 1.03690 1.04306 1.22797 0.97088 0.92760 0.86425 1.22369 1.01165 0.95689 1.04404 1.86162 1.29038 1.66837 1.39714 1.20082 0.86831 0.95247 0.94915 1.22882 0.92380 0.92607 0.98131 1.67841 1.04443 1.19094 1.25451 1.23193 1.00096 0.95371 0.87381 1.20748 0.96097 1.02843 0.96218 1.18306 0.81634 0.78811 0.86584 1.90755 1.74455 1.42566 1.37751 1.45853 1.16770 1.52573 1.20462 1.21309 0.90381 1.00132 0.87972 1.22136 0.93262 1.01177 1.00341 1.21149 0.86236 0.95064 0.96520 1.43765 1.09009 1.07558 1.70330 1.18614 1.05448 0.94264 1.18905 0.93061 1.26001 0.98053 0.98074 0.99634 1.69937 1.42576 1.08727 1.38228 0.85938 0.76472 0.77931 0.82701 1.20296 1.24675 1.18218 1.21534 0.93860 0.84893 0.99642 1.23060 1.00488 1.00362 0.98621 1.23376 1.07353 1.03031 0.92037 1.21939 0.93652 1.00096 0.98791 0.90938 0.88628 0.91469 0.90886 0.89169 0.90789 0.93571 0.79014 0.79976 0.74678 0.93455 0.90409 0.89219 0.92592 0.95367 0.90914 0.93021 0.85122 0.91484 0.86834 0.87118 0.92432 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.56 71.98 0.69 -0.52 16 2 C 0.06 0.85 2.84 30.59 0.09 0.93 16 3 C -0.18 -2.25 9.25 71.98 0.67 -1.59 16 4 O -0.30 -5.03 9.80 -92.62 -0.91 -5.94 16 5 C 0.08 1.43 6.63 22.56 0.15 1.58 16 6 C 0.10 1.71 11.13 84.83 0.94 2.65 16 7 N -0.46 -9.16 10.34 -194.40 -2.01 -11.17 16 8 C 0.10 1.88 10.71 85.02 0.91 2.79 16 9 C -0.15 -3.46 5.89 -20.00 -0.12 -3.57 16 10 C 0.56 15.19 7.78 86.79 0.68 15.86 16 11 O -0.57 -19.69 16.42 -3.88 -0.06 -19.76 16 12 N -0.70 -17.04 5.51 -465.96 -2.57 -19.60 16 13 C 0.13 3.59 5.67 86.38 0.49 4.08 16 14 C -0.13 -3.98 5.65 30.59 0.17 -3.81 16 15 C 0.14 5.15 4.50 86.38 0.39 5.54 16 16 N -0.59 -25.43 2.46 -678.03 -1.66 -27.09 16 17 C -0.24 -13.03 9.08 84.03 0.76 -12.27 16 18 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 19 C -0.02 -1.23 5.37 84.86 0.46 -0.78 16 20 N -0.95 -58.66 13.97 21.65 0.30 -58.36 16 21 Si 0.94 46.17 24.77 68.60 1.70 47.87 16 22 H -0.28 -12.97 6.72 99.48 0.67 -12.30 16 23 H -0.32 -16.18 7.11 99.48 0.71 -15.47 16 24 H -0.26 -12.07 7.08 99.48 0.70 -11.37 16 25 C 0.11 3.83 6.56 44.99 0.30 4.13 16 26 C -0.19 -6.55 9.80 30.62 0.30 -6.25 16 27 C -0.22 -7.51 10.36 30.62 0.32 -7.19 16 28 C -0.12 -2.50 7.98 22.83 0.18 -2.32 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.55 16 32 H 0.07 1.00 6.18 -2.39 -0.01 0.99 16 33 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.74 7.21 -2.39 -0.02 0.73 16 36 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.18 2.59 6.42 -2.91 -0.02 2.57 16 38 H 0.42 7.65 6.53 -92.71 -0.61 7.05 16 39 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.03 1.24 2.84 -2.39 -0.01 1.23 16 44 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 45 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 47 H 0.07 2.85 6.40 -2.38 -0.02 2.83 16 48 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 50 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.15 3.21 5.37 -2.91 -0.02 3.19 16 Total: -1.00 -72.22 410.92 2.46 -69.76 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.30 Total: 25.01 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 7.37 Total: -0.73 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -5.94 Total: -116.22 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.97 Total: -25.70 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.70 Total: 47.87 kcal Total: -72.22 2.46 -69.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713767646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.409 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds