Wall clock time and date at job start Wed Apr 1 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09005 * 109.47226 * 2 1 4 4 C 1.53004 * 109.47472 * 119.99705 * 2 1 3 5 5 C 1.53002 * 109.47393 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.46903 * 299.99888 * 5 4 2 7 7 C 1.53008 * 109.47198 * 60.00164 * 6 5 4 8 8 C 1.52995 * 109.46806 * 299.99803 * 7 6 5 9 9 C 1.53004 * 109.47140 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46901 * 64.58002 * 9 8 7 11 11 C 1.36937 * 119.99943 * 185.75861 * 10 9 8 12 12 H 1.08001 * 119.99786 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00310 * 180.02562 * 11 10 9 14 14 N 1.31625 * 119.99710 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00496 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47088 * 59.99514 * 15 13 11 17 17 H 1.48496 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46782 * 299.99891 * 15 13 11 19 19 N 1.46502 * 109.47567 * 299.99948 * 8 7 6 20 20 C 1.34780 * 120.00142 * 194.08590 * 19 8 7 21 21 O 1.21586 * 119.99830 * 356.44429 * 20 19 8 22 22 C 1.47512 * 119.99876 * 176.45063 * 20 19 8 23 23 C 1.36821 * 126.94020 * 180.02562 * 22 20 19 24 24 C 1.41263 * 103.84492 * 179.97438 * 23 22 20 25 25 C 1.50698 * 126.70494 * 179.97438 * 24 23 22 26 26 C 1.53004 * 117.50084 * 343.62558 * 25 24 23 27 27 C 1.52994 * 117.50540 * 275.00010 * 25 24 23 28 28 N 1.30127 * 106.59073 * 0.25740 * 24 23 22 29 29 O 1.20891 * 111.97880 * 359.53867 * 28 24 23 30 30 H 1.09002 * 109.47155 * 186.88916 * 1 2 3 31 31 H 1.09004 * 109.47725 * 306.89255 * 1 2 3 32 32 H 1.09005 * 109.47604 * 66.89617 * 1 2 3 33 33 H 1.09009 * 109.46735 * 300.00385 * 4 2 1 34 34 H 1.08997 * 109.46715 * 59.99672 * 4 2 1 35 35 H 1.08991 * 109.47117 * 59.99915 * 5 4 2 36 36 H 1.08997 * 109.46568 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.47203 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.47168 * 300.00490 * 6 5 4 39 39 H 1.09002 * 109.46799 * 180.02562 * 7 6 5 40 40 H 1.08992 * 109.46700 * 59.99916 * 7 6 5 41 41 H 1.08989 * 109.47462 * 184.58232 * 9 8 7 42 42 H 1.09008 * 109.47074 * 304.58484 * 9 8 7 43 43 H 0.96998 * 120.00210 * 5.75030 * 10 9 8 44 44 H 0.96998 * 120.00353 * 180.02562 * 14 13 11 45 45 H 0.96998 * 119.99941 * 14.07837 * 19 8 7 46 46 H 1.07994 * 128.08040 * 0.02562 * 23 22 20 47 47 H 1.09004 * 115.54470 * 129.33050 * 25 24 23 48 48 H 1.08991 * 117.49531 * 359.97438 * 26 25 24 49 49 H 1.09000 * 117.49504 * 145.01795 * 26 25 24 50 50 H 1.08993 * 117.50289 * 214.98434 * 27 25 24 51 51 H 1.09004 * 117.49328 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0804 -1.4416 0.0004 7 6 3.5704 -0.7204 -1.2489 8 6 2.0405 -0.7209 -1.2492 9 6 1.5304 0.0008 -2.4981 10 7 1.9271 -0.7498 -3.6921 11 6 1.6836 -0.2344 -4.9372 12 1 1.1987 0.7253 -5.0389 13 6 2.0590 -0.9457 -6.0685 14 7 2.6494 -2.1156 -5.9444 15 14 1.7262 -0.2430 -7.7669 16 1 2.4290 1.0571 -7.9111 17 1 2.2187 -1.1897 -8.7995 18 1 0.2656 -0.0380 -7.9403 19 7 1.5526 -2.1023 -1.2494 20 6 0.2607 -2.3607 -1.5337 21 8 -0.5145 -1.4440 -1.7264 22 6 -0.2128 -3.7557 -1.6109 23 6 -1.4843 -4.1783 -1.8877 24 6 -1.3907 -5.5869 -1.8379 25 6 -2.5073 -6.5726 -2.0678 26 6 -3.9412 -6.0423 -2.0078 27 6 -3.4014 -6.9182 -0.8754 28 7 -0.1533 -5.8671 -1.5486 29 8 0.5190 -4.8701 -1.4238 30 1 -0.3633 -1.0203 0.1233 31 1 -0.3635 0.6169 0.8219 32 1 -0.3634 0.4033 -0.9453 33 1 1.6766 -0.2073 2.1393 34 1 1.6766 -1.7488 1.2493 35 1 3.9329 0.3071 1.2497 36 1 3.9332 -1.2348 2.1394 37 1 5.1705 -1.4416 0.0008 38 1 3.7174 -2.4694 0.0002 39 1 3.9337 -1.2343 -2.1389 40 1 3.9334 0.3073 -1.2487 41 1 0.4435 0.0720 -2.4582 42 1 1.9589 1.0023 -2.5396 43 1 2.3623 -1.6118 -3.6007 44 1 2.9121 -2.6126 -6.7349 45 1 2.1593 -2.8310 -1.0450 46 1 -2.3559 -3.5757 -2.0965 47 1 -2.2934 -7.3666 -2.7834 48 1 -4.0770 -4.9807 -1.8016 49 1 -4.6710 -6.4874 -2.6841 50 1 -3.7760 -7.9394 -0.8066 51 1 -3.1817 -6.4329 0.0756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714188333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:58 Heat of formation + Delta-G solvation = 72.481355 kcal Electronic energy + Delta-G solvation = -32693.262594 eV Core-core repulsion = 28597.558841 eV Total energy + Delta-G solvation = -4095.703753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.87387 -40.79171 -37.83782 -37.74256 -34.64806 -33.50841 -33.15252 -32.60658 -31.81326 -30.94262 -29.35601 -26.40280 -25.02124 -24.71223 -24.18981 -22.94622 -22.63353 -21.92037 -21.19290 -20.55319 -19.96170 -18.81170 -18.28312 -17.62280 -17.11585 -16.25203 -15.90850 -15.66146 -15.16414 -14.69561 -14.56944 -14.34910 -14.27474 -13.92201 -13.71663 -13.48354 -13.39792 -13.05097 -12.54726 -12.35560 -12.28002 -11.88509 -11.78825 -11.76523 -11.72345 -11.52738 -11.35019 -11.25997 -11.19517 -10.86403 -10.78376 -10.73624 -10.63460 -10.41217 -10.11895 -10.02130 -9.83165 -9.71970 -9.63008 -9.55001 -9.41073 -8.70471 -8.48477 -6.77385 -5.69038 -2.95100 1.02526 2.07096 2.80929 3.35944 3.44155 3.48374 3.52441 3.52856 3.53939 3.93696 4.51404 4.59415 4.64663 4.80535 4.86343 4.87460 4.88687 4.91690 5.10171 5.23805 5.27074 5.33178 5.37060 5.42016 5.54917 5.60491 5.64792 5.65198 5.66447 5.73648 5.78550 5.82387 5.83571 5.96727 5.97760 6.06509 6.13675 6.21570 6.23901 6.29063 6.36506 6.41865 6.44335 6.60839 6.69331 6.75190 6.97190 7.18405 7.72346 7.77732 8.18400 8.42875 8.50174 9.61442 10.20010 10.55145 11.53935 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007089 B = 0.004783 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.693486 B = 5852.556959 C = 8525.090503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.119 4.119 8 C 0.180 3.820 9 C 0.130 3.870 10 N -0.725 5.725 11 C -0.229 4.229 12 H 0.068 0.932 13 C -0.015 4.015 14 N -0.936 5.936 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.287 1.287 19 N -0.695 5.695 20 C 0.605 3.395 21 O -0.485 6.485 22 C -0.064 4.064 23 C -0.157 4.157 24 C 0.040 3.960 25 C -0.085 4.085 26 C -0.162 4.162 27 C -0.164 4.164 28 N -0.345 5.345 29 O 0.116 5.884 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.024 0.976 43 H 0.382 0.618 44 H 0.253 0.747 45 H 0.400 0.600 46 H 0.179 0.821 47 H 0.124 0.876 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.102 0.898 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -4.616 16.601 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.157 4.157 8 C 0.095 3.905 9 C 0.003 3.997 10 N -0.369 5.369 11 C -0.361 4.361 12 H 0.086 0.914 13 C -0.211 4.211 14 N -0.585 5.585 15 Si 0.735 3.265 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.214 1.214 19 N -0.347 5.347 20 C 0.388 3.612 21 O -0.360 6.360 22 C -0.130 4.130 23 C -0.179 4.179 24 C -0.118 4.118 25 C -0.104 4.104 26 C -0.200 4.200 27 C -0.202 4.202 28 N -0.045 5.045 29 O 0.044 5.956 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.216 0.784 44 H 0.063 0.937 45 H 0.236 0.764 46 H 0.197 0.803 47 H 0.142 0.858 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.726 -4.958 16.486 18.143 hybrid contribution -0.159 0.184 -1.234 1.258 sum -5.886 -4.775 15.252 17.031 Atomic orbital electron populations 1.22305 0.93945 1.01860 1.01790 1.21502 0.96832 0.99217 0.93727 0.90579 1.21573 0.95202 1.00761 0.97391 1.21548 0.95822 1.00670 0.97577 1.21589 1.00384 0.99256 0.94711 1.21788 0.93199 1.02228 0.98486 1.20726 0.93630 0.80371 0.95811 1.21354 0.99872 0.93637 0.84855 1.42218 1.72094 1.22410 1.00211 1.19161 1.31549 1.01778 0.83586 0.91438 1.24668 1.01860 0.96980 0.97546 1.69640 1.46773 1.13796 1.28279 0.86308 0.77781 0.77795 0.84583 1.21393 1.21844 1.21437 1.45771 1.09278 1.09648 1.69960 1.16280 0.83190 0.83521 0.78182 1.90865 1.55686 1.41419 1.47988 1.24527 0.92059 0.89931 1.06503 1.22682 0.98279 0.93510 1.03469 1.22578 0.92730 0.93174 1.03282 1.20083 0.87772 0.99318 1.03187 1.23053 0.94486 1.00749 1.01698 1.23018 1.02297 1.01251 0.93585 1.73659 1.05517 1.08248 1.17112 1.84971 1.35204 1.10010 1.65462 0.92412 0.95037 0.90056 0.92385 0.92134 0.92032 0.92447 0.91789 0.92249 0.89827 0.90453 0.92034 0.95775 0.78436 0.93691 0.76427 0.80323 0.85779 0.88023 0.87695 0.87941 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.30 37.15 0.27 -1.78 16 2 C -0.09 -1.23 2.07 -90.62 -0.19 -1.42 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.24 5.04 -26.73 -0.13 -1.38 16 5 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 6 C -0.12 -1.37 5.75 -26.73 -0.15 -1.52 16 7 C -0.12 -1.71 4.72 -26.73 -0.13 -1.83 16 8 C 0.18 2.78 0.32 -131.82 -0.04 2.74 16 9 C 0.13 2.64 4.39 -4.04 -0.02 2.63 16 10 N -0.72 -18.07 5.02 -59.91 -0.30 -18.37 16 11 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 12 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 13 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 14 N -0.94 -28.45 13.06 55.49 0.72 -27.73 16 15 Si 0.90 22.93 29.55 -169.99 -5.02 17.91 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 N -0.69 -10.66 3.55 -48.64 -0.17 -10.83 16 20 C 0.61 10.32 6.00 -12.48 -0.07 10.25 16 21 O -0.49 -9.17 10.25 5.29 0.05 -9.12 16 22 C -0.06 -1.04 7.29 -36.32 -0.26 -1.30 16 23 C -0.16 -2.33 10.26 -38.95 -0.40 -2.73 16 24 C 0.04 0.57 6.94 -82.17 -0.57 0.00 16 25 C -0.08 -0.93 6.33 -91.77 -0.58 -1.51 16 26 C -0.16 -1.40 10.04 -26.73 -0.27 -1.67 16 27 C -0.16 -1.41 10.23 -26.73 -0.27 -1.69 16 28 N -0.34 -5.50 12.04 33.52 0.40 -5.10 16 29 O 0.12 1.86 11.05 15.57 0.17 2.03 16 30 H 0.06 0.87 5.47 -51.93 -0.28 0.59 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 1.36 5.17 -51.93 -0.27 1.09 16 33 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.65 6.62 -51.93 -0.34 0.30 16 39 H 0.08 1.43 7.28 -51.93 -0.38 1.05 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.35 4.19 -51.94 -0.22 1.13 16 42 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.38 9.92 6.61 -40.82 -0.27 9.65 16 44 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.40 5.51 6.80 -40.82 -0.28 5.23 16 46 H 0.18 2.38 7.62 -52.49 -0.40 1.98 16 47 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 48 H 0.10 0.88 7.34 -51.93 -0.38 0.50 16 49 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -32.04 392.49 -9.29 -41.33 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -7.83 Total: 13.73 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.23 Total: -9.76 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.65 Total: -62.02 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.23 Total: -7.09 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.04 -9.29 -41.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714188333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.808 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds