Wall clock time and date at job start Wed Apr 1 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09005 * 109.47226 * 2 1 4 4 C 1.53004 * 109.47472 * 119.99705 * 2 1 3 5 5 C 1.53002 * 109.47393 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.46903 * 299.99888 * 5 4 2 7 7 C 1.53008 * 109.47198 * 60.00164 * 6 5 4 8 8 C 1.52995 * 109.46806 * 299.99803 * 7 6 5 9 9 C 1.53004 * 109.47140 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46901 * 64.58002 * 9 8 7 11 11 C 1.36937 * 119.99943 * 185.75861 * 10 9 8 12 12 H 1.08001 * 119.99786 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00310 * 180.02562 * 11 10 9 14 14 N 1.31625 * 119.99710 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00496 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47088 * 59.99514 * 15 13 11 17 17 H 1.48496 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46782 * 299.99891 * 15 13 11 19 19 N 1.46502 * 109.47567 * 299.99948 * 8 7 6 20 20 C 1.34780 * 120.00142 * 194.08590 * 19 8 7 21 21 O 1.21586 * 119.99830 * 356.44429 * 20 19 8 22 22 C 1.47512 * 119.99876 * 176.45063 * 20 19 8 23 23 C 1.36821 * 126.94020 * 180.02562 * 22 20 19 24 24 C 1.41263 * 103.84492 * 179.97438 * 23 22 20 25 25 C 1.50698 * 126.70494 * 179.97438 * 24 23 22 26 26 C 1.53004 * 117.50084 * 343.62558 * 25 24 23 27 27 C 1.52994 * 117.50540 * 275.00010 * 25 24 23 28 28 N 1.30127 * 106.59073 * 0.25740 * 24 23 22 29 29 O 1.20891 * 111.97880 * 359.53867 * 28 24 23 30 30 H 1.09002 * 109.47155 * 186.88916 * 1 2 3 31 31 H 1.09004 * 109.47725 * 306.89255 * 1 2 3 32 32 H 1.09005 * 109.47604 * 66.89617 * 1 2 3 33 33 H 1.09009 * 109.46735 * 300.00385 * 4 2 1 34 34 H 1.08997 * 109.46715 * 59.99672 * 4 2 1 35 35 H 1.08991 * 109.47117 * 59.99915 * 5 4 2 36 36 H 1.08997 * 109.46568 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.47203 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.47168 * 300.00490 * 6 5 4 39 39 H 1.09002 * 109.46799 * 180.02562 * 7 6 5 40 40 H 1.08992 * 109.46700 * 59.99916 * 7 6 5 41 41 H 1.08989 * 109.47462 * 184.58232 * 9 8 7 42 42 H 1.09008 * 109.47074 * 304.58484 * 9 8 7 43 43 H 0.96998 * 120.00210 * 5.75030 * 10 9 8 44 44 H 0.96998 * 120.00353 * 180.02562 * 14 13 11 45 45 H 0.96998 * 119.99941 * 14.07837 * 19 8 7 46 46 H 1.07994 * 128.08040 * 0.02562 * 23 22 20 47 47 H 1.09004 * 115.54470 * 129.33050 * 25 24 23 48 48 H 1.08991 * 117.49531 * 359.97438 * 26 25 24 49 49 H 1.09000 * 117.49504 * 145.01795 * 26 25 24 50 50 H 1.08993 * 117.50289 * 214.98434 * 27 25 24 51 51 H 1.09004 * 117.49328 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0804 -1.4416 0.0004 7 6 3.5704 -0.7204 -1.2489 8 6 2.0405 -0.7209 -1.2492 9 6 1.5304 0.0008 -2.4981 10 7 1.9271 -0.7498 -3.6921 11 6 1.6836 -0.2344 -4.9372 12 1 1.1987 0.7253 -5.0389 13 6 2.0590 -0.9457 -6.0685 14 7 2.6494 -2.1156 -5.9444 15 14 1.7262 -0.2430 -7.7669 16 1 2.4290 1.0571 -7.9111 17 1 2.2187 -1.1897 -8.7995 18 1 0.2656 -0.0380 -7.9403 19 7 1.5526 -2.1023 -1.2494 20 6 0.2607 -2.3607 -1.5337 21 8 -0.5145 -1.4440 -1.7264 22 6 -0.2128 -3.7557 -1.6109 23 6 -1.4843 -4.1783 -1.8877 24 6 -1.3907 -5.5869 -1.8379 25 6 -2.5073 -6.5726 -2.0678 26 6 -3.9412 -6.0423 -2.0078 27 6 -3.4014 -6.9182 -0.8754 28 7 -0.1533 -5.8671 -1.5486 29 8 0.5190 -4.8701 -1.4238 30 1 -0.3633 -1.0203 0.1233 31 1 -0.3635 0.6169 0.8219 32 1 -0.3634 0.4033 -0.9453 33 1 1.6766 -0.2073 2.1393 34 1 1.6766 -1.7488 1.2493 35 1 3.9329 0.3071 1.2497 36 1 3.9332 -1.2348 2.1394 37 1 5.1705 -1.4416 0.0008 38 1 3.7174 -2.4694 0.0002 39 1 3.9337 -1.2343 -2.1389 40 1 3.9334 0.3073 -1.2487 41 1 0.4435 0.0720 -2.4582 42 1 1.9589 1.0023 -2.5396 43 1 2.3623 -1.6118 -3.6007 44 1 2.9121 -2.6126 -6.7349 45 1 2.1593 -2.8310 -1.0450 46 1 -2.3559 -3.5757 -2.0965 47 1 -2.2934 -7.3666 -2.7834 48 1 -4.0770 -4.9807 -1.8016 49 1 -4.6710 -6.4874 -2.6841 50 1 -3.7760 -7.9394 -0.8066 51 1 -3.1817 -6.4329 0.0756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714188333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:57 Heat of formation + Delta-G solvation = 53.941339 kcal Electronic energy + Delta-G solvation = -32694.066549 eV Core-core repulsion = 28597.558841 eV Total energy + Delta-G solvation = -4096.507708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.06934 -42.07813 -39.07589 -38.56407 -36.38214 -34.87397 -34.33296 -33.84503 -33.18365 -32.56042 -30.81047 -27.75507 -26.54426 -25.76195 -25.39631 -24.69630 -23.48841 -22.91714 -22.40827 -21.69303 -21.07201 -20.09971 -19.43699 -19.16753 -18.80274 -17.38811 -17.24138 -16.79770 -16.58496 -16.20103 -15.70824 -15.60314 -15.32622 -15.28435 -14.92075 -14.84402 -14.79074 -14.64838 -13.96834 -13.64147 -13.31587 -13.19744 -12.98936 -12.91864 -12.82318 -12.72357 -12.68059 -12.51362 -12.42562 -12.35265 -12.20643 -12.11873 -11.86031 -11.81895 -11.41948 -11.35716 -11.14332 -11.07351 -10.90584 -10.83088 -10.64088 -10.58928 -9.81225 -8.86321 -7.92495 -5.17655 -0.24227 0.93855 1.44169 1.47008 1.52713 1.53838 2.04756 2.23197 2.56648 2.65204 2.98828 3.40108 3.49112 3.69266 3.76631 3.79023 3.83656 3.91461 3.97979 4.05726 4.13061 4.19897 4.23719 4.38197 4.40740 4.49693 4.56530 4.61658 4.71287 4.71905 4.75867 4.81426 4.91209 4.93431 4.97444 5.05443 5.06603 5.14614 5.20280 5.20782 5.25034 5.27447 5.37008 5.40055 5.47154 5.50361 5.55466 5.68334 5.73972 6.29635 6.42382 6.96635 7.11810 7.36924 8.14528 8.39500 9.30458 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007089 B = 0.004783 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.693486 B = 5852.556959 C = 8525.090503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.084 0.916 4 C -0.106 4.106 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.114 4.114 8 C 0.186 3.814 9 C 0.129 3.871 10 N -0.730 5.730 11 C -0.236 4.236 12 H 0.067 0.933 13 C -0.072 4.072 14 N -0.967 5.967 15 Si 0.966 3.034 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.284 1.284 19 N -0.687 5.687 20 C 0.601 3.399 21 O -0.509 6.509 22 C -0.081 4.081 23 C -0.158 4.158 24 C 0.048 3.952 25 C -0.114 4.114 26 C -0.152 4.152 27 C -0.149 4.149 28 N -0.364 5.364 29 O 0.107 5.893 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.022 0.978 43 H 0.374 0.626 44 H 0.248 0.752 45 H 0.408 0.592 46 H 0.191 0.809 47 H 0.129 0.871 48 H 0.100 0.900 49 H 0.126 0.874 50 H 0.125 0.875 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 -4.669 18.166 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.152 4.152 8 C 0.101 3.899 9 C 0.002 3.998 10 N -0.373 5.373 11 C -0.368 4.368 12 H 0.085 0.915 13 C -0.264 4.264 14 N -0.618 5.618 15 Si 0.796 3.204 16 H -0.203 1.203 17 H -0.221 1.221 18 H -0.211 1.211 19 N -0.339 5.339 20 C 0.385 3.615 21 O -0.386 6.386 22 C -0.147 4.147 23 C -0.180 4.180 24 C -0.110 4.110 25 C -0.133 4.133 26 C -0.189 4.189 27 C -0.187 4.187 28 N -0.067 5.067 29 O 0.037 5.963 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.207 0.793 44 H 0.057 0.943 45 H 0.245 0.755 46 H 0.209 0.791 47 H 0.147 0.853 48 H 0.118 0.882 49 H 0.144 0.856 50 H 0.143 0.857 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.276 -4.978 18.089 19.784 hybrid contribution -0.055 0.215 -1.703 1.718 sum -6.331 -4.763 16.386 18.201 Atomic orbital electron populations 1.22166 0.94741 1.01393 1.00917 1.21473 0.96031 0.99644 0.93566 0.89767 1.21536 0.96039 1.00299 0.96468 1.21525 0.94778 1.01241 0.97467 1.21566 1.01148 0.99069 0.93603 1.21716 0.92065 1.02497 0.98923 1.20649 0.94416 0.80156 0.94672 1.21446 0.99133 0.93699 0.85499 1.42315 1.71860 1.22379 1.00759 1.19517 1.30523 1.01651 0.85133 0.91511 1.25406 1.02504 0.97536 1.00999 1.69795 1.48270 1.15046 1.28711 0.85317 0.77614 0.77294 0.80209 1.20310 1.22148 1.21072 1.45738 1.08935 1.09949 1.69242 1.16444 0.83437 0.83724 0.77880 1.90860 1.56318 1.42153 1.49226 1.24514 0.92763 0.89793 1.07611 1.22974 0.98214 0.94147 1.02698 1.23102 0.92934 0.93549 1.01439 1.20298 0.87913 0.99643 1.05437 1.23188 0.92935 1.00940 1.01810 1.23119 1.00353 1.02496 0.92694 1.73637 1.06443 1.08306 1.18296 1.84948 1.35394 1.09917 1.66062 0.93352 0.93161 0.92887 0.90644 0.92564 0.91235 0.90358 0.90500 0.92003 0.93105 0.90113 0.93355 0.96020 0.79325 0.94291 0.75533 0.79144 0.85274 0.88203 0.85624 0.85697 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 7.30 71.98 0.53 -3.32 16 2 C -0.09 -2.22 2.07 -10.80 -0.02 -2.25 16 3 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 4 C -0.11 -2.09 5.04 30.60 0.15 -1.94 16 5 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 6 C -0.12 -2.41 5.75 30.60 0.18 -2.23 16 7 C -0.11 -3.24 4.72 30.60 0.14 -3.09 16 8 C 0.19 5.80 0.32 3.60 0.00 5.80 16 9 C 0.13 5.37 4.39 86.38 0.38 5.75 16 10 N -0.73 -37.55 5.02 -343.45 -1.72 -39.28 16 11 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 12 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 13 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 14 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 15 Si 0.97 47.76 29.55 68.60 2.03 49.79 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 18 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 19 N -0.69 -21.51 3.55 -426.07 -1.51 -23.02 16 20 C 0.60 21.15 6.00 86.69 0.52 21.67 16 21 O -0.51 -19.93 10.25 -3.99 -0.04 -19.97 16 22 C -0.08 -2.69 7.29 24.39 0.18 -2.51 16 23 C -0.16 -4.76 10.26 22.68 0.23 -4.53 16 24 C 0.05 1.36 6.94 43.55 0.30 1.66 16 25 C -0.11 -2.38 6.33 -11.54 -0.07 -2.45 16 26 C -0.15 -2.31 10.04 30.60 0.31 -2.01 16 27 C -0.15 -2.26 10.23 30.59 0.31 -1.94 16 28 N -0.36 -11.75 12.04 -48.87 -0.59 -12.34 16 29 O 0.11 3.51 11.05 65.89 0.73 4.23 16 30 H 0.05 1.46 5.47 -2.39 -0.01 1.44 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.82 5.17 -2.38 -0.01 1.80 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.26 6.62 -2.38 -0.02 1.24 16 39 H 0.05 1.78 7.28 -2.39 -0.02 1.77 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.20 4.19 -2.39 -0.01 2.19 16 42 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.37 20.19 6.61 -92.71 -0.61 19.58 16 44 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.41 11.46 6.80 -92.71 -0.63 10.83 16 46 H 0.19 5.10 7.62 -2.91 -0.02 5.07 16 47 H 0.13 2.54 8.14 -2.38 -0.02 2.52 16 48 H 0.10 1.57 7.34 -2.39 -0.02 1.55 16 49 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -70.49 392.49 3.52 -66.97 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: -0.28 Total: 43.23 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 4.63 Total: -9.73 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -3.54 Total: -134.52 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.69 Total: -15.74 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -70.49 3.52 -66.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714188333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.913 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds