Wall clock time and date at job start Wed Apr 1 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47052 * 2 1 4 4 O 1.42895 * 109.47199 * 120.00432 * 2 1 3 5 5 C 1.35928 * 117.00423 * 85.27435 * 4 2 1 6 6 C 1.38857 * 120.40352 * 174.60658 * 5 4 2 7 7 N 1.31878 * 120.99440 * 180.02562 * 6 5 4 8 8 C 1.31686 * 121.94396 * 359.70243 * 7 6 5 9 9 C 1.39525 * 120.68700 * 0.58884 * 8 7 6 10 10 C 1.47855 * 120.52805 * 179.70172 * 9 8 7 11 11 O 1.21551 * 120.00075 * 179.72360 * 10 9 8 12 12 N 1.34773 * 120.00037 * 359.72281 * 10 9 8 13 13 C 1.46504 * 119.99951 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.05548 * 326.42001 * 13 12 10 15 15 C 1.54265 * 110.03082 * 87.83565 * 13 12 10 16 16 C 1.54889 * 104.19503 * 142.89512 * 15 13 12 17 17 C 1.54889 * 102.75082 * 322.05644 * 16 15 13 18 18 C 1.53875 * 110.03406 * 205.00111 * 13 12 10 19 19 H 1.08997 * 110.03161 * 121.38449 * 18 13 12 20 20 C 1.53000 * 110.02970 * 0.02562 * 18 13 12 21 21 N 1.46505 * 109.46987 * 175.00055 * 20 18 13 22 22 C 1.36936 * 119.99797 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00286 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99720 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00090 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99933 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47434 * 270.00243 * 26 24 22 28 28 H 1.48499 * 109.47109 * 29.99948 * 26 24 22 29 29 H 1.48500 * 109.47330 * 150.00171 * 26 24 22 30 30 C 1.38833 * 120.40182 * 354.64008 * 5 4 2 31 31 H 1.09001 * 109.47640 * 59.99954 * 1 2 3 32 32 H 1.09002 * 109.47540 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47085 * 299.99794 * 1 2 3 34 34 H 1.09007 * 109.46804 * 240.00113 * 2 1 3 35 35 H 1.09007 * 109.47327 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47068 * 299.99967 * 3 2 1 37 37 H 1.08999 * 109.47007 * 60.00158 * 3 2 1 38 38 H 1.07999 * 119.49952 * 0.02562 * 6 5 4 39 39 H 1.08000 * 119.65314 * 180.29478 * 8 7 6 40 40 H 0.96993 * 120.00430 * 0.02562 * 12 10 9 41 41 H 1.09000 * 110.48741 * 261.57429 * 15 13 12 42 42 H 1.09000 * 110.49097 * 24.08470 * 15 13 12 43 43 H 1.08996 * 110.75575 * 80.37677 * 16 15 13 44 44 H 1.09004 * 110.75305 * 203.74153 * 16 15 13 45 45 H 1.08997 * 110.48452 * 279.26908 * 17 16 15 46 46 H 1.08995 * 110.48770 * 156.62008 * 17 16 15 47 47 H 1.08996 * 109.47556 * 55.00095 * 20 18 13 48 48 H 1.08996 * 109.47309 * 294.99656 * 20 18 13 49 49 H 0.97001 * 119.99791 * 359.97438 * 21 20 18 50 50 H 0.97004 * 119.99738 * 359.97438 * 25 24 22 51 51 H 1.08002 * 120.88547 * 359.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1180 -2.0265 1.0958 6 6 2.6777 -2.7414 2.1464 7 7 2.7921 -4.0540 2.0898 8 6 2.3803 -4.7450 1.0473 9 6 1.8119 -4.1027 -0.0533 10 6 1.3567 -4.8814 -1.2248 11 8 0.8583 -4.3125 -2.1763 12 7 1.4943 -6.2221 -1.2376 13 6 1.0426 -6.9937 -2.3982 14 1 0.1630 -6.5250 -2.8394 15 6 2.1730 -7.0856 -3.4440 16 6 2.0372 -8.5148 -4.0255 17 6 1.6583 -9.3556 -2.7811 18 6 0.7154 -8.4370 -1.9767 19 1 -0.3233 -8.6684 -2.2126 20 6 0.9635 -8.6141 -0.4774 21 7 0.5362 -9.9539 -0.0666 22 6 0.6633 -10.3423 1.2403 23 1 1.0789 -9.6613 1.9682 24 6 0.2579 -11.6116 1.6296 25 7 -0.2481 -12.4419 0.7425 26 14 0.4319 -12.1419 3.4123 27 1 1.7600 -12.7752 3.6130 28 1 0.3111 -10.9546 4.2959 29 1 -0.6370 -13.1175 3.7451 30 6 1.6745 -2.7102 -0.0282 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.0244 -2.2146 3.0231 39 1 2.4878 -5.8196 1.0421 40 1 1.8916 -6.6762 -0.4782 41 1 2.0303 -6.3403 -4.2264 42 1 3.1449 -6.9561 -2.9678 43 1 1.2456 -8.5538 -4.7737 44 1 2.9846 -8.8523 -4.4459 45 1 2.5471 -9.5949 -2.1974 46 1 1.1400 -10.2667 -3.0797 47 1 0.3957 -7.8661 0.0758 48 1 2.0262 -8.4916 -0.2680 49 1 0.1633 -10.5657 -0.7205 50 1 -0.3381 -12.1666 -0.1833 51 1 1.2350 -2.1815 -0.8611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715565784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:58 Heat of formation + Delta-G solvation = -32.693386 kcal Electronic energy + Delta-G solvation = -30726.911773 eV Core-core repulsion = 26626.647301 eV Total energy + Delta-G solvation = -4100.264472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26277 -40.09482 -38.81102 -37.95383 -34.70759 -33.98730 -33.65418 -32.56386 -31.49392 -30.55477 -28.43895 -27.80901 -27.66809 -24.83334 -24.25746 -24.19370 -22.72479 -21.53836 -21.19970 -20.57648 -19.24247 -18.96038 -17.47169 -17.31471 -17.10302 -16.74741 -16.02846 -15.94910 -15.32006 -15.09333 -14.79126 -14.67292 -14.42994 -14.27651 -13.93122 -13.71659 -13.64885 -13.41443 -13.28945 -13.03810 -12.95844 -12.75844 -12.63673 -12.32880 -12.26364 -11.80590 -11.47007 -11.33378 -11.23366 -10.94374 -10.78902 -10.64273 -10.58644 -10.53693 -10.44721 -10.33209 -10.06510 -10.01820 -9.70103 -9.20239 -9.11013 -8.89754 -8.77380 -7.04572 -6.13004 -3.13335 0.35451 0.90488 2.63662 2.69623 3.00105 3.51513 3.55981 3.57792 3.69905 4.07128 4.23278 4.33773 4.40318 4.49208 4.50964 4.64325 4.64791 4.68057 4.69817 4.70612 4.98938 5.07254 5.09592 5.24699 5.29084 5.30078 5.33503 5.48059 5.50232 5.56021 5.58651 5.63307 5.64421 5.68984 5.73464 5.74143 5.79659 5.94041 5.99350 6.00419 6.04981 6.16809 6.31000 6.44314 6.46705 6.57144 6.67306 6.84086 7.39290 7.58263 7.77587 8.05294 8.73451 9.19308 10.05752 10.20226 11.35530 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.002661 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.040428 B =10520.261720 C =12474.740432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.147 4.147 4 O -0.302 6.302 5 C 0.074 3.926 6 C 0.096 3.904 7 N -0.444 5.444 8 C 0.098 3.902 9 C -0.144 4.144 10 C 0.562 3.438 11 O -0.540 6.540 12 N -0.711 5.711 13 C 0.149 3.851 14 H 0.092 0.908 15 C -0.132 4.132 16 C -0.124 4.124 17 C -0.112 4.112 18 C -0.110 4.110 19 H 0.082 0.918 20 C 0.162 3.838 21 N -0.739 5.739 22 C -0.334 4.334 23 H 0.065 0.935 24 C -0.044 4.044 25 N -0.943 5.943 26 Si 1.082 2.918 27 H -0.295 1.295 28 H -0.294 1.294 29 H -0.288 1.288 30 C -0.112 4.112 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.407 0.593 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.022 0.978 48 H 0.018 0.982 49 H 0.368 0.632 50 H 0.255 0.745 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 24.701 -5.836 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.215 6.215 5 C 0.026 3.974 6 C -0.063 4.063 7 N -0.152 5.152 8 C -0.060 4.060 9 C -0.149 4.149 10 C 0.348 3.652 11 O -0.418 6.418 12 N -0.365 5.365 13 C 0.044 3.956 14 H 0.110 0.890 15 C -0.170 4.170 16 C -0.162 4.162 17 C -0.150 4.150 18 C -0.129 4.129 19 H 0.101 0.899 20 C 0.034 3.966 21 N -0.384 5.384 22 C -0.464 4.464 23 H 0.083 0.917 24 C -0.242 4.242 25 N -0.588 5.588 26 Si 0.912 3.088 27 H -0.223 1.223 28 H -0.221 1.221 29 H -0.214 1.214 30 C -0.139 4.139 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.186 0.814 39 H 0.180 0.820 40 H 0.247 0.753 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.036 0.964 49 H 0.201 0.799 50 H 0.066 0.934 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.849 23.694 -4.403 24.799 hybrid contribution -0.190 1.251 -1.780 2.183 sum 5.659 24.944 -6.183 26.315 Atomic orbital electron populations 1.22395 0.94629 1.03441 1.03463 1.22554 0.94721 0.93912 0.87146 1.21852 1.02174 0.93131 1.03296 1.86156 1.81097 1.15167 1.39040 1.20053 0.97657 0.84191 0.95475 1.22478 0.97007 0.89320 0.97458 1.67780 1.15325 1.06811 1.25296 1.22966 0.94328 1.00594 0.88148 1.20887 1.03054 0.94243 0.96716 1.18021 0.78652 0.82451 0.86120 1.90747 1.44569 1.70336 1.36170 1.46328 1.62327 1.06104 1.21697 1.21702 0.97485 0.91159 0.85210 0.89008 1.22768 0.98701 0.97477 0.98101 1.22482 1.01346 0.94569 0.97761 1.22369 0.99541 0.97723 0.95379 1.22255 1.00758 0.92621 0.97301 0.89939 1.20634 0.96407 0.89072 0.90529 1.42317 1.76502 1.11439 1.08176 1.20044 1.39858 1.00616 0.85931 0.91695 1.25773 0.99147 0.92686 1.06553 1.70858 1.47619 1.37217 1.03146 0.83211 0.76309 0.75348 0.73893 1.22261 1.22076 1.21391 1.21843 0.99793 0.93776 0.98449 0.90634 0.91739 0.91172 0.90659 0.91528 0.90288 0.91267 0.81422 0.81959 0.75282 0.91347 0.91208 0.91458 0.91472 0.90918 0.91305 0.96035 0.96420 0.79880 0.93375 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.20 37.16 0.34 -0.93 16 2 C 0.07 0.54 2.85 -26.73 -0.08 0.46 16 3 C -0.15 -0.78 9.56 37.16 0.36 -0.43 16 4 O -0.30 -2.87 9.81 -19.51 -0.19 -3.06 16 5 C 0.07 0.79 6.62 -39.13 -0.26 0.53 16 6 C 0.10 1.04 11.13 -17.30 -0.19 0.85 16 7 N -0.44 -5.61 10.34 -12.79 -0.13 -5.75 16 8 C 0.10 1.21 10.71 -17.13 -0.18 1.03 16 9 C -0.14 -1.82 5.89 -104.84 -0.62 -2.44 16 10 C 0.56 7.92 7.78 -12.33 -0.10 7.83 16 11 O -0.54 -8.85 16.07 5.32 0.09 -8.76 16 12 N -0.71 -9.54 4.34 -53.66 -0.23 -9.77 16 13 C 0.15 2.03 3.23 -66.81 -0.22 1.82 16 14 H 0.09 1.32 7.57 -51.93 -0.39 0.93 16 15 C -0.13 -1.59 6.53 -25.07 -0.16 -1.76 16 16 C -0.12 -1.43 6.91 -24.74 -0.17 -1.61 16 17 C -0.11 -1.61 6.08 -25.07 -0.15 -1.76 16 18 C -0.11 -1.69 2.96 -89.50 -0.26 -1.95 16 19 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 20 C 0.16 3.04 4.19 -4.04 -0.02 3.03 16 21 N -0.74 -17.95 5.45 -59.91 -0.33 -18.28 16 22 C -0.33 -9.23 9.99 -15.06 -0.15 -9.38 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 24 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 25 N -0.94 -28.88 13.70 55.49 0.76 -28.12 16 26 Si 1.08 25.86 29.92 -169.99 -5.09 20.78 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 C -0.11 -1.28 7.89 -38.72 -0.31 -1.59 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 6.98 -51.93 -0.36 0.18 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.55 6.32 -51.92 -0.33 0.23 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.16 1.85 6.42 -52.49 -0.34 1.51 16 40 H 0.41 5.27 3.96 -40.82 -0.16 5.11 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.13 7.76 -51.93 -0.40 0.73 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.42 7.42 -51.93 -0.39 0.04 16 48 H 0.02 0.33 7.10 -51.93 -0.37 -0.04 16 49 H 0.37 9.18 6.38 -40.82 -0.26 8.92 16 50 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 51 H 0.15 1.65 5.28 -52.49 -0.28 1.37 16 LS Contribution 405.26 15.07 6.11 6.11 Total: -1.00 -33.30 405.26 -9.11 -42.41 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -7.83 Total: 12.09 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.26 Total: -7.65 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.07 Total: -61.92 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.11 Total: -11.82 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.30 -9.11 -42.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715565784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.719 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds