Wall clock time and date at job start Wed Apr 1 2020 05:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46954 * 2 1 4 4 O 1.42894 * 109.47571 * 119.99922 * 2 1 3 5 5 C 1.35922 * 117.00440 * 154.53958 * 4 2 1 6 6 C 1.38846 * 120.41001 * 185.48586 * 5 4 2 7 7 N 1.31885 * 121.00414 * 180.02562 * 6 5 4 8 8 C 1.31684 * 121.93640 * 0.02562 * 7 6 5 9 9 C 1.39521 * 120.69222 * 0.02562 * 8 7 6 10 10 C 1.47863 * 120.52967 * 180.02562 * 9 8 7 11 11 O 1.21551 * 119.99709 * 180.02562 * 10 9 8 12 12 N 1.34770 * 119.99863 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99796 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.02014 * 34.93736 * 13 12 10 15 15 C 1.53876 * 110.03408 * 273.54211 * 13 12 10 16 16 C 1.54266 * 106.59876 * 240.71813 * 15 13 12 17 17 C 1.54889 * 104.19561 * 336.38582 * 16 15 13 18 18 C 1.54270 * 110.03331 * 156.37711 * 13 12 10 19 19 H 1.08992 * 110.48628 * 24.07786 * 18 13 12 20 20 C 1.53004 * 110.48577 * 261.57380 * 18 13 12 21 21 N 1.46494 * 109.46963 * 175.00012 * 20 18 13 22 22 C 1.36946 * 120.00008 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99431 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00237 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99805 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00110 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46673 * 60.00404 * 26 24 22 28 28 H 1.48497 * 109.47160 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47289 * 300.00603 * 26 24 22 30 30 C 1.38848 * 120.40358 * 5.81093 * 5 4 2 31 31 H 1.09008 * 109.46798 * 299.99763 * 1 2 3 32 32 H 1.08993 * 109.47427 * 59.99750 * 1 2 3 33 33 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47063 * 240.00476 * 2 1 3 35 35 H 1.08995 * 109.47248 * 60.00129 * 3 2 1 36 36 H 1.08998 * 109.47298 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47405 * 300.00102 * 3 2 1 38 38 H 1.08003 * 119.50283 * 0.02680 * 6 5 4 39 39 H 1.07997 * 119.65180 * 179.97438 * 8 7 6 40 40 H 0.97002 * 120.00368 * 359.97438 * 12 10 9 41 41 H 1.09003 * 110.02451 * 0.02562 * 15 13 12 42 42 H 1.08995 * 110.03234 * 121.43142 * 15 13 12 43 43 H 1.09000 * 110.48928 * 95.06737 * 16 15 13 44 44 H 1.09002 * 110.48512 * 217.70766 * 16 15 13 45 45 H 1.08999 * 110.75992 * 279.62965 * 17 16 15 46 46 H 1.08998 * 110.75233 * 156.26026 * 17 16 15 47 47 H 1.09004 * 109.47127 * 294.99971 * 20 18 13 48 48 H 1.08999 * 109.47363 * 54.99768 * 20 18 13 49 49 H 0.97000 * 120.00858 * 359.97438 * 21 20 18 50 50 H 0.97000 * 119.99818 * 179.97438 * 25 24 22 51 51 H 1.08007 * 120.87671 * 0.02562 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2430 -1.2331 1.0946 6 6 3.7294 -2.0007 2.1444 7 7 4.9277 -2.5486 2.0870 8 6 5.7142 -2.3958 1.0420 9 6 5.3020 -1.6386 -0.0550 10 6 6.1878 -1.4699 -1.2267 11 8 5.8190 -0.8077 -2.1770 12 7 7.4041 -2.0502 -1.2411 13 6 8.2820 -1.8825 -2.4019 14 1 8.1531 -0.8869 -2.8266 15 6 7.9652 -2.9526 -3.4613 16 6 9.2544 -3.7778 -3.6534 17 6 10.3869 -2.8247 -3.1971 18 6 9.7527 -2.0948 -1.9872 19 1 9.8111 -2.7139 -1.0921 20 6 10.4422 -0.7494 -1.7519 21 7 11.7978 -0.9774 -1.2454 22 6 12.6105 0.0874 -0.9606 23 1 12.2518 1.0953 -1.1091 24 6 13.8947 -0.1286 -0.4802 25 7 14.3315 -1.3569 -0.2987 26 14 15.0036 1.3238 -0.0924 27 1 14.3674 2.1675 0.9510 28 1 16.3135 0.8286 0.4015 29 1 15.2114 2.1301 -1.3220 30 6 4.0380 -1.0385 -0.0270 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 3.1172 -2.1514 3.0213 39 1 6.6889 -2.8608 1.0344 40 1 7.6985 -2.5783 -0.4826 41 1 7.1580 -3.5963 -3.1119 42 1 7.6833 -2.4764 -4.4003 43 1 9.2324 -4.6708 -3.0287 44 1 9.3820 -4.0475 -4.7018 45 1 10.6379 -2.1169 -3.9871 46 1 11.2668 -3.3898 -2.8895 47 1 10.4932 -0.1981 -2.6908 48 1 9.8740 -0.1725 -1.0223 49 1 12.1198 -1.8826 -1.1116 50 1 15.2291 -1.5079 0.0367 51 1 3.6892 -0.4417 -0.8569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715565795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:07 Heat of formation + Delta-G solvation = -40.952621 kcal Electronic energy + Delta-G solvation = -30257.071341 eV Core-core repulsion = 26156.448722 eV Total energy + Delta-G solvation = -4100.622619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28951 -39.99661 -38.80230 -37.87995 -34.54100 -33.92132 -33.61478 -32.60295 -31.41216 -30.59745 -28.61970 -27.81639 -27.66169 -25.05725 -24.29050 -24.19815 -22.15598 -21.60175 -21.28259 -20.17899 -19.89767 -18.77106 -17.38250 -17.28649 -17.13955 -16.63695 -16.25872 -15.96858 -15.25025 -14.85753 -14.76535 -14.63600 -14.45344 -14.29581 -13.76919 -13.69768 -13.52525 -13.28495 -13.19932 -12.99948 -12.84570 -12.78177 -12.66718 -12.29803 -12.13853 -11.81970 -11.49139 -11.37923 -11.25936 -10.97768 -10.85717 -10.78612 -10.55770 -10.46695 -10.38600 -10.33868 -10.10678 -10.01673 -9.75269 -9.69321 -9.09944 -8.86346 -8.82446 -6.91694 -5.76321 -3.04652 0.30677 0.84934 2.60200 2.66831 2.96880 3.44750 3.49056 3.50059 3.52999 4.01147 4.20322 4.30241 4.38370 4.47047 4.50748 4.56968 4.61727 4.62930 4.72606 4.79940 5.00978 5.04358 5.08424 5.23168 5.27497 5.28318 5.43256 5.51172 5.53999 5.57525 5.61160 5.63669 5.66609 5.72444 5.74405 5.79533 5.88577 5.94354 6.02937 6.13285 6.19313 6.26455 6.49985 6.51709 6.54325 6.76243 6.80088 6.87889 7.36692 7.51044 7.70352 8.04029 8.42804 9.54077 10.11423 10.46512 11.46454 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.002232 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.917442 B =12542.323730 C =13472.735381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 C -0.182 4.182 4 O -0.302 6.302 5 C 0.076 3.924 6 C 0.095 3.905 7 N -0.446 5.446 8 C 0.095 3.905 9 C -0.142 4.142 10 C 0.562 3.438 11 O -0.535 6.535 12 N -0.709 5.709 13 C 0.146 3.854 14 H 0.095 0.905 15 C -0.131 4.131 16 C -0.125 4.125 17 C -0.110 4.110 18 C -0.102 4.102 19 H 0.080 0.920 20 C 0.161 3.839 21 N -0.730 5.730 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.112 4.112 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.401 0.599 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.021 0.979 48 H 0.017 0.983 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.438 -3.495 -0.973 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.240 4.240 4 O -0.215 6.215 5 C 0.028 3.972 6 C -0.064 4.064 7 N -0.154 5.154 8 C -0.063 4.063 9 C -0.147 4.147 10 C 0.347 3.653 11 O -0.413 6.413 12 N -0.360 5.360 13 C 0.042 3.958 14 H 0.113 0.887 15 C -0.170 4.170 16 C -0.163 4.163 17 C -0.148 4.148 18 C -0.122 4.122 19 H 0.099 0.901 20 C 0.033 3.967 21 N -0.374 5.374 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.139 4.139 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.185 0.815 39 H 0.180 0.820 40 H 0.237 0.763 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.039 0.961 48 H 0.035 0.965 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -27.474 -3.330 -0.792 27.686 hybrid contribution 0.754 0.881 -0.219 1.180 sum -26.719 -2.449 -1.010 26.851 Atomic orbital electron populations 1.21855 0.91972 1.03306 1.03335 1.22565 0.95772 0.92909 0.87073 1.22399 1.02422 0.95621 1.03514 1.86154 1.28511 1.67743 1.39058 1.20056 0.86268 0.95431 0.95457 1.22446 0.92671 0.93800 0.97489 1.67762 1.03468 1.18937 1.25268 1.22919 0.99400 0.95779 0.88201 1.20910 0.95776 1.01291 0.96756 1.17992 0.81679 0.79474 0.86128 1.90769 1.74279 1.40018 1.36211 1.46119 1.15907 1.52611 1.21360 1.21787 0.88708 1.00300 0.85034 0.88713 1.22541 0.98074 0.97355 0.98985 1.22392 0.94648 0.98207 1.01034 1.22454 0.97461 0.97840 0.97049 1.22444 0.91861 0.98875 0.98981 0.90128 1.20684 0.87027 0.92505 0.96467 1.42306 1.09970 1.06658 1.78488 1.19180 0.94157 0.87678 1.35999 0.91342 1.24725 0.97569 0.96385 1.02289 1.69643 1.18132 1.18340 1.52136 0.86270 0.80067 0.81765 0.78108 1.21305 1.21688 1.21289 1.21875 0.93425 1.00074 0.98494 0.91270 0.90242 0.91539 0.90630 0.91174 0.91706 0.90569 0.81465 0.81958 0.76334 0.91731 0.91244 0.91775 0.91765 0.90998 0.90614 0.96110 0.96500 0.78251 0.93494 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.56 37.16 0.36 -0.38 16 2 C 0.07 0.51 2.85 -26.73 -0.08 0.43 16 3 C -0.18 -1.23 9.20 37.16 0.34 -0.89 16 4 O -0.30 -2.70 9.81 -19.50 -0.19 -2.90 16 5 C 0.08 0.75 6.62 -39.13 -0.26 0.49 16 6 C 0.09 0.92 11.13 -17.30 -0.19 0.73 16 7 N -0.45 -4.95 10.34 -12.80 -0.13 -5.08 16 8 C 0.10 1.01 10.71 -17.14 -0.18 0.82 16 9 C -0.14 -1.63 5.89 -104.84 -0.62 -2.25 16 10 C 0.56 7.43 7.77 -12.32 -0.10 7.33 16 11 O -0.54 -8.63 16.10 5.32 0.09 -8.55 16 12 N -0.71 -8.52 4.95 -53.65 -0.27 -8.78 16 13 C 0.15 1.95 2.79 -66.81 -0.19 1.77 16 14 H 0.09 1.44 7.30 -51.92 -0.38 1.06 16 15 C -0.13 -1.55 6.59 -25.61 -0.17 -1.72 16 16 C -0.13 -1.44 6.83 -25.07 -0.17 -1.61 16 17 C -0.11 -1.58 6.19 -24.74 -0.15 -1.73 16 18 C -0.10 -1.55 2.58 -88.96 -0.23 -1.78 16 19 H 0.08 1.20 7.73 -51.93 -0.40 0.80 16 20 C 0.16 3.19 5.54 -4.04 -0.02 3.16 16 21 N -0.73 -18.14 5.49 -59.91 -0.33 -18.47 16 22 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 26 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 C -0.11 -1.20 7.89 -38.72 -0.31 -1.51 16 31 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.53 6.33 -51.93 -0.33 0.20 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.53 6.96 -51.93 -0.36 0.17 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.16 1.37 6.42 -52.49 -0.34 1.03 16 40 H 0.40 3.99 6.40 -40.82 -0.26 3.73 16 41 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.09 7.97 -51.93 -0.41 0.67 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.38 9.91 7.64 -40.82 -0.31 9.60 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.15 1.59 5.27 -52.48 -0.28 1.31 16 LS Contribution 411.81 15.07 6.21 6.21 Total: -1.00 -33.08 411.81 -9.23 -42.31 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.09 Total: 9.53 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.21 Total: -4.46 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.00 Total: -59.62 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.11 Total: -11.44 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.08 -9.23 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715565795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.356 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds