Wall clock time and date at job start Wed Apr 1 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46954 * 2 1 4 4 O 1.42894 * 109.47571 * 119.99922 * 2 1 3 5 5 C 1.35922 * 117.00440 * 154.53958 * 4 2 1 6 6 C 1.38846 * 120.41001 * 185.48586 * 5 4 2 7 7 N 1.31885 * 121.00414 * 180.02562 * 6 5 4 8 8 C 1.31684 * 121.93640 * 0.02562 * 7 6 5 9 9 C 1.39521 * 120.69222 * 0.02562 * 8 7 6 10 10 C 1.47863 * 120.52967 * 180.02562 * 9 8 7 11 11 O 1.21551 * 119.99709 * 180.02562 * 10 9 8 12 12 N 1.34770 * 119.99863 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99796 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.02014 * 34.93736 * 13 12 10 15 15 C 1.53876 * 110.03408 * 273.54211 * 13 12 10 16 16 C 1.54266 * 106.59876 * 240.71813 * 15 13 12 17 17 C 1.54889 * 104.19561 * 336.38582 * 16 15 13 18 18 C 1.54270 * 110.03331 * 156.37711 * 13 12 10 19 19 H 1.08992 * 110.48628 * 24.07786 * 18 13 12 20 20 C 1.53004 * 110.48577 * 261.57380 * 18 13 12 21 21 N 1.46494 * 109.46963 * 175.00012 * 20 18 13 22 22 C 1.36946 * 120.00008 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99431 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00237 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99805 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00110 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46673 * 60.00404 * 26 24 22 28 28 H 1.48497 * 109.47160 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47289 * 300.00603 * 26 24 22 30 30 C 1.38848 * 120.40358 * 5.81093 * 5 4 2 31 31 H 1.09008 * 109.46798 * 299.99763 * 1 2 3 32 32 H 1.08993 * 109.47427 * 59.99750 * 1 2 3 33 33 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47063 * 240.00476 * 2 1 3 35 35 H 1.08995 * 109.47248 * 60.00129 * 3 2 1 36 36 H 1.08998 * 109.47298 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47405 * 300.00102 * 3 2 1 38 38 H 1.08003 * 119.50283 * 0.02680 * 6 5 4 39 39 H 1.07997 * 119.65180 * 179.97438 * 8 7 6 40 40 H 0.97002 * 120.00368 * 359.97438 * 12 10 9 41 41 H 1.09003 * 110.02451 * 0.02562 * 15 13 12 42 42 H 1.08995 * 110.03234 * 121.43142 * 15 13 12 43 43 H 1.09000 * 110.48928 * 95.06737 * 16 15 13 44 44 H 1.09002 * 110.48512 * 217.70766 * 16 15 13 45 45 H 1.08999 * 110.75992 * 279.62965 * 17 16 15 46 46 H 1.08998 * 110.75233 * 156.26026 * 17 16 15 47 47 H 1.09004 * 109.47127 * 294.99971 * 20 18 13 48 48 H 1.08999 * 109.47363 * 54.99768 * 20 18 13 49 49 H 0.97000 * 120.00858 * 359.97438 * 21 20 18 50 50 H 0.97000 * 119.99818 * 179.97438 * 25 24 22 51 51 H 1.08007 * 120.87671 * 0.02562 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2430 -1.2331 1.0946 6 6 3.7294 -2.0007 2.1444 7 7 4.9277 -2.5486 2.0870 8 6 5.7142 -2.3958 1.0420 9 6 5.3020 -1.6386 -0.0550 10 6 6.1878 -1.4699 -1.2267 11 8 5.8190 -0.8077 -2.1770 12 7 7.4041 -2.0502 -1.2411 13 6 8.2820 -1.8825 -2.4019 14 1 8.1531 -0.8869 -2.8266 15 6 7.9652 -2.9526 -3.4613 16 6 9.2544 -3.7778 -3.6534 17 6 10.3869 -2.8247 -3.1971 18 6 9.7527 -2.0948 -1.9872 19 1 9.8111 -2.7139 -1.0921 20 6 10.4422 -0.7494 -1.7519 21 7 11.7978 -0.9774 -1.2454 22 6 12.6105 0.0874 -0.9606 23 1 12.2518 1.0953 -1.1091 24 6 13.8947 -0.1286 -0.4802 25 7 14.3315 -1.3569 -0.2987 26 14 15.0036 1.3238 -0.0924 27 1 14.3674 2.1675 0.9510 28 1 16.3135 0.8286 0.4015 29 1 15.2114 2.1301 -1.3220 30 6 4.0380 -1.0385 -0.0270 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 3.1172 -2.1514 3.0213 39 1 6.6889 -2.8608 1.0344 40 1 7.6985 -2.5783 -0.4826 41 1 7.1580 -3.5963 -3.1119 42 1 7.6833 -2.4764 -4.4003 43 1 9.2324 -4.6708 -3.0287 44 1 9.3820 -4.0475 -4.7018 45 1 10.6379 -2.1169 -3.9871 46 1 11.2668 -3.3898 -2.8895 47 1 10.4932 -0.1981 -2.6908 48 1 9.8740 -0.1725 -1.0223 49 1 12.1198 -1.8826 -1.1116 50 1 15.2291 -1.5079 0.0367 51 1 3.6892 -0.4417 -0.8569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715565795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:06 Heat of formation + Delta-G solvation = -62.088357 kcal Electronic energy + Delta-G solvation = -30257.987856 eV Core-core repulsion = 26156.448722 eV Total energy + Delta-G solvation = -4101.539133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.11474 -40.98154 -39.62327 -38.99871 -36.33707 -34.94825 -34.31973 -33.47724 -33.28142 -31.38640 -30.21312 -28.75145 -28.24432 -26.45343 -25.58453 -25.00708 -23.85715 -22.39844 -22.09432 -21.37388 -20.93784 -19.75704 -19.08182 -18.23684 -17.95357 -17.69499 -17.30213 -16.68119 -16.59695 -16.25064 -15.81265 -15.72497 -15.42667 -15.18047 -15.11249 -15.07059 -14.66398 -14.52565 -14.44935 -13.99540 -13.56792 -13.49138 -13.38986 -13.16521 -13.14648 -12.94631 -12.86209 -12.76830 -12.49338 -12.20743 -12.05478 -11.96490 -11.88572 -11.80750 -11.63974 -11.59935 -11.49964 -11.42510 -10.97314 -10.92740 -10.65237 -10.16404 -9.58927 -8.99747 -7.95518 -5.23740 -0.54420 0.05051 1.46615 1.49044 1.55295 1.69079 1.92105 2.00658 2.55214 2.67811 3.20414 3.37252 3.45296 3.46514 3.65936 3.66331 3.68209 3.75766 3.83563 3.90419 3.92809 4.08193 4.15620 4.31654 4.40615 4.47445 4.54098 4.58365 4.63034 4.65326 4.69759 4.73429 4.74153 4.80214 4.81948 4.85692 4.98552 5.00859 5.07953 5.16302 5.17347 5.21595 5.24550 5.24833 5.33894 5.46495 5.50542 5.55750 6.10661 6.26808 6.38238 6.71189 7.03256 7.33947 8.08792 8.34218 9.27290 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.002232 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.917442 B =12542.323730 C =13472.735381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.180 4.180 4 O -0.305 6.305 5 C 0.077 3.923 6 C 0.097 3.903 7 N -0.461 5.461 8 C 0.096 3.904 9 C -0.154 4.154 10 C 0.563 3.437 11 O -0.569 6.569 12 N -0.701 5.701 13 C 0.153 3.847 14 H 0.075 0.925 15 C -0.123 4.123 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.092 4.092 19 H 0.087 0.913 20 C 0.162 3.838 21 N -0.738 5.738 22 C -0.248 4.248 23 H 0.069 0.931 24 C -0.071 4.071 25 N -0.965 5.965 26 Si 0.971 3.029 27 H -0.280 1.280 28 H -0.293 1.293 29 H -0.279 1.279 30 C -0.116 4.116 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.192 0.808 39 H 0.181 0.819 40 H 0.412 0.588 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.015 0.985 48 H 0.010 0.990 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.912 -3.792 -0.787 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.010 3.990 3 C -0.238 4.238 4 O -0.218 6.218 5 C 0.029 3.971 6 C -0.062 4.062 7 N -0.170 5.170 8 C -0.062 4.062 9 C -0.160 4.160 10 C 0.350 3.650 11 O -0.449 6.449 12 N -0.353 5.353 13 C 0.048 3.952 14 H 0.093 0.907 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.111 4.111 19 H 0.105 0.895 20 C 0.035 3.965 21 N -0.381 5.381 22 C -0.380 4.380 23 H 0.087 0.913 24 C -0.264 4.264 25 N -0.615 5.615 26 Si 0.800 3.200 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.206 1.206 30 C -0.143 4.143 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.208 0.792 39 H 0.198 0.802 40 H 0.250 0.750 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.028 0.972 49 H 0.210 0.790 50 H 0.061 0.939 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.974 -3.626 -0.604 29.207 hybrid contribution 1.119 1.029 -0.271 1.544 sum -27.856 -2.596 -0.875 27.990 Atomic orbital electron populations 1.21873 0.90204 1.03702 1.04294 1.22789 0.97096 0.92699 0.86380 1.22393 1.01192 0.95785 1.04399 1.86159 1.27897 1.67716 1.40062 1.20076 0.86562 0.95363 0.95103 1.22863 0.92446 0.92822 0.98040 1.67826 1.04099 1.19608 1.25434 1.23168 1.00028 0.95305 0.87680 1.20789 0.95936 1.02665 0.96562 1.18218 0.81841 0.78741 0.86156 1.90749 1.75033 1.41590 1.37569 1.46020 1.15426 1.52402 1.21405 1.21584 0.87652 1.00076 0.85857 0.90718 1.22477 0.98553 0.96835 0.98316 1.22324 0.92690 0.97710 1.02214 1.22406 0.98083 0.98096 0.96276 1.22289 0.92664 0.96315 0.99812 0.89500 1.20780 0.85089 0.95217 0.95421 1.42449 1.11471 1.05664 1.78541 1.19539 0.94778 0.88524 1.35176 0.91303 1.25509 0.99049 0.98912 1.02929 1.69787 1.18243 1.20129 1.53344 0.85259 0.77939 0.78810 0.78035 1.20619 1.21873 1.20555 1.21948 0.93442 1.00013 0.98913 0.91036 0.88556 0.91425 0.90812 0.90912 0.93554 0.89088 0.79157 0.80245 0.75005 0.90663 0.91104 0.90374 0.90233 0.92115 0.91954 0.96683 0.97231 0.79039 0.93918 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.56 71.98 0.69 -0.51 16 2 C 0.07 0.86 2.85 30.59 0.09 0.95 16 3 C -0.18 -2.31 9.20 71.98 0.66 -1.65 16 4 O -0.31 -5.14 9.81 -92.67 -0.91 -6.05 16 5 C 0.08 1.45 6.62 22.56 0.15 1.60 16 6 C 0.10 1.75 11.13 84.83 0.94 2.70 16 7 N -0.46 -9.61 10.34 -194.40 -2.01 -11.62 16 8 C 0.10 1.92 10.71 85.02 0.91 2.83 16 9 C -0.15 -3.47 5.89 -20.01 -0.12 -3.59 16 10 C 0.56 14.74 7.77 86.79 0.67 15.41 16 11 O -0.57 -18.51 16.10 -3.87 -0.06 -18.57 16 12 N -0.70 -16.28 4.95 -441.95 -2.19 -18.47 16 13 C 0.15 4.00 2.79 45.72 0.13 4.13 16 14 H 0.07 2.29 7.30 -2.38 -0.02 2.28 16 15 C -0.12 -2.70 6.59 31.32 0.21 -2.49 16 16 C -0.11 -2.33 6.83 31.67 0.22 -2.12 16 17 C -0.11 -3.11 6.19 31.88 0.20 -2.92 16 18 C -0.09 -2.74 2.58 -9.72 -0.03 -2.76 16 19 H 0.09 2.51 7.73 -2.39 -0.02 2.49 16 20 C 0.16 6.48 5.54 86.38 0.48 6.96 16 21 N -0.74 -37.17 5.49 -343.44 -1.89 -39.06 16 22 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 25 N -0.96 -58.43 13.06 21.65 0.28 -58.14 16 26 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 30 C -0.12 -2.46 7.89 22.83 0.18 -2.28 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.99 6.33 -2.39 -0.02 0.97 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.76 6.96 -2.39 -0.02 0.75 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.18 2.76 6.42 -2.91 -0.02 2.74 16 40 H 0.41 7.66 6.40 -92.71 -0.59 7.07 16 41 H 0.07 1.53 7.92 -2.39 -0.02 1.51 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.83 7.97 -2.39 -0.02 1.81 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.02 0.63 8.02 -2.38 -0.02 0.61 16 48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.38 19.80 7.64 -92.71 -0.71 19.09 16 50 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 51 H 0.15 3.19 5.27 -2.91 -0.02 3.18 16 Total: -1.00 -70.68 411.81 1.59 -69.09 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.35 Total: 34.95 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 6.69 Total: -0.54 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -5.80 Total: -127.30 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.97 Total: -24.62 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -70.68 1.59 -69.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715565795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.999 kcal (2) G-P(sol) polarization free energy of solvation -70.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds