Wall clock time and date at job start Wed Apr 1 2020 05:02:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53005 * 109.46954 * 2 1
4 4 O 1.42894 * 109.47571 * 119.99922 * 2 1 3
5 5 C 1.35922 * 117.00440 * 154.53958 * 4 2 1
6 6 C 1.38846 * 120.41001 * 185.48586 * 5 4 2
7 7 N 1.31885 * 121.00414 * 180.02562 * 6 5 4
8 8 C 1.31684 * 121.93640 * 0.02562 * 7 6 5
9 9 C 1.39521 * 120.69222 * 0.02562 * 8 7 6
10 10 C 1.47863 * 120.52967 * 180.02562 * 9 8 7
11 11 O 1.21551 * 119.99709 * 180.02562 * 10 9 8
12 12 N 1.34770 * 119.99863 * 0.02562 * 10 9 8
13 13 C 1.46499 * 119.99796 * 180.02562 * 12 10 9
14 14 H 1.09007 * 110.02014 * 34.93736 * 13 12 10
15 15 C 1.53876 * 110.03408 * 273.54211 * 13 12 10
16 16 C 1.54266 * 106.59876 * 240.71813 * 15 13 12
17 17 C 1.54889 * 104.19561 * 336.38582 * 16 15 13
18 18 C 1.54270 * 110.03331 * 156.37711 * 13 12 10
19 19 H 1.08992 * 110.48628 * 24.07786 * 18 13 12
20 20 C 1.53004 * 110.48577 * 261.57380 * 18 13 12
21 21 N 1.46494 * 109.46963 * 175.00012 * 20 18 13
22 22 C 1.36946 * 120.00008 * 179.97438 * 21 20 18
23 23 H 1.08005 * 119.99431 * 0.02562 * 22 21 20
24 24 C 1.38810 * 120.00237 * 179.97438 * 22 21 20
25 25 N 1.31618 * 119.99805 * 0.02562 * 24 22 21
26 26 Si 1.86803 * 120.00110 * 179.97438 * 24 22 21
27 27 H 1.48504 * 109.46673 * 60.00404 * 26 24 22
28 28 H 1.48497 * 109.47160 * 180.02562 * 26 24 22
29 29 H 1.48494 * 109.47289 * 300.00603 * 26 24 22
30 30 C 1.38848 * 120.40358 * 5.81093 * 5 4 2
31 31 H 1.09008 * 109.46798 * 299.99763 * 1 2 3
32 32 H 1.08993 * 109.47427 * 59.99750 * 1 2 3
33 33 H 1.09000 * 109.46996 * 180.02562 * 1 2 3
34 34 H 1.09001 * 109.47063 * 240.00476 * 2 1 3
35 35 H 1.08995 * 109.47248 * 60.00129 * 3 2 1
36 36 H 1.08998 * 109.47298 * 179.97438 * 3 2 1
37 37 H 1.09001 * 109.47405 * 300.00102 * 3 2 1
38 38 H 1.08003 * 119.50283 * 0.02680 * 6 5 4
39 39 H 1.07997 * 119.65180 * 179.97438 * 8 7 6
40 40 H 0.97002 * 120.00368 * 359.97438 * 12 10 9
41 41 H 1.09003 * 110.02451 * 0.02562 * 15 13 12
42 42 H 1.08995 * 110.03234 * 121.43142 * 15 13 12
43 43 H 1.09000 * 110.48928 * 95.06737 * 16 15 13
44 44 H 1.09002 * 110.48512 * 217.70766 * 16 15 13
45 45 H 1.08999 * 110.75992 * 279.62965 * 17 16 15
46 46 H 1.08998 * 110.75233 * 156.26026 * 17 16 15
47 47 H 1.09004 * 109.47127 * 294.99971 * 20 18 13
48 48 H 1.08999 * 109.47363 * 54.99768 * 20 18 13
49 49 H 0.97000 * 120.00858 * 359.97438 * 21 20 18
50 50 H 0.97000 * 119.99818 * 179.97438 * 25 24 22
51 51 H 1.08007 * 120.87671 * 0.02562 * 30 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 3.2430 -1.2331 1.0946
6 6 3.7294 -2.0007 2.1444
7 7 4.9277 -2.5486 2.0870
8 6 5.7142 -2.3958 1.0420
9 6 5.3020 -1.6386 -0.0550
10 6 6.1878 -1.4699 -1.2267
11 8 5.8190 -0.8077 -2.1770
12 7 7.4041 -2.0502 -1.2411
13 6 8.2820 -1.8825 -2.4019
14 1 8.1531 -0.8869 -2.8266
15 6 7.9652 -2.9526 -3.4613
16 6 9.2544 -3.7778 -3.6534
17 6 10.3869 -2.8247 -3.1971
18 6 9.7527 -2.0948 -1.9872
19 1 9.8111 -2.7139 -1.0921
20 6 10.4422 -0.7494 -1.7519
21 7 11.7978 -0.9774 -1.2454
22 6 12.6105 0.0874 -0.9606
23 1 12.2518 1.0953 -1.1091
24 6 13.8947 -0.1286 -0.4802
25 7 14.3315 -1.3569 -0.2987
26 14 15.0036 1.3238 -0.0924
27 1 14.3674 2.1675 0.9510
28 1 16.3135 0.8286 0.4015
29 1 15.2114 2.1301 -1.3220
30 6 4.0380 -1.0385 -0.0270
31 1 -0.3633 0.5138 0.8901
32 1 -0.3634 0.5138 -0.8899
33 1 -0.3633 -1.0277 0.0005
34 1 1.8933 -0.5138 -0.8900
35 1 1.6766 1.9564 0.8899
36 1 3.1299 1.4426 0.0005
37 1 1.6766 1.9564 -0.8900
38 1 3.1172 -2.1514 3.0213
39 1 6.6889 -2.8608 1.0344
40 1 7.6985 -2.5783 -0.4826
41 1 7.1580 -3.5963 -3.1119
42 1 7.6833 -2.4764 -4.4003
43 1 9.2324 -4.6708 -3.0287
44 1 9.3820 -4.0475 -4.7018
45 1 10.6379 -2.1169 -3.9871
46 1 11.2668 -3.3898 -2.8895
47 1 10.4932 -0.1981 -2.6908
48 1 9.8740 -0.1725 -1.0223
49 1 12.1198 -1.8826 -1.1116
50 1 15.2291 -1.5079 0.0367
51 1 3.6892 -0.4417 -0.8569
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001715565795.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:02:06
Heat of formation + Delta-G solvation = -62.088357 kcal
Electronic energy + Delta-G solvation = -30257.987856 eV
Core-core repulsion = 26156.448722 eV
Total energy + Delta-G solvation = -4101.539133 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.11474 -40.98154 -39.62327 -38.99871 -36.33707 -34.94825 -34.31973 -33.47724
-33.28142 -31.38640 -30.21312 -28.75145 -28.24432 -26.45343 -25.58453 -25.00708
-23.85715 -22.39844 -22.09432 -21.37388 -20.93784 -19.75704 -19.08182 -18.23684
-17.95357 -17.69499 -17.30213 -16.68119 -16.59695 -16.25064 -15.81265 -15.72497
-15.42667 -15.18047 -15.11249 -15.07059 -14.66398 -14.52565 -14.44935 -13.99540
-13.56792 -13.49138 -13.38986 -13.16521 -13.14648 -12.94631 -12.86209 -12.76830
-12.49338 -12.20743 -12.05478 -11.96490 -11.88572 -11.80750 -11.63974 -11.59935
-11.49964 -11.42510 -10.97314 -10.92740 -10.65237 -10.16404 -9.58927 -8.99747
-7.95518 -5.23740 -0.54420 0.05051 1.46615 1.49044 1.55295 1.69079
1.92105 2.00658 2.55214 2.67811 3.20414 3.37252 3.45296 3.46514
3.65936 3.66331 3.68209 3.75766 3.83563 3.90419 3.92809 4.08193
4.15620 4.31654 4.40615 4.47445 4.54098 4.58365 4.63034 4.65326
4.69759 4.73429 4.74153 4.80214 4.81948 4.85692 4.98552 5.00859
5.07953 5.16302 5.17347 5.21595 5.24550 5.24833 5.33894 5.46495
5.50542 5.55750 6.10661 6.26808 6.38238 6.71189 7.03256 7.33947
8.08792 8.34218 9.27290
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011963 B = 0.002232 C = 0.002078
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2339.917442 B =12542.323730 C =13472.735381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.066 3.934
3 C -0.180 4.180
4 O -0.305 6.305
5 C 0.077 3.923
6 C 0.097 3.903
7 N -0.461 5.461
8 C 0.096 3.904
9 C -0.154 4.154
10 C 0.563 3.437
11 O -0.569 6.569
12 N -0.701 5.701
13 C 0.153 3.847
14 H 0.075 0.925
15 C -0.123 4.123
16 C -0.112 4.112
17 C -0.111 4.111
18 C -0.092 4.092
19 H 0.087 0.913
20 C 0.162 3.838
21 N -0.738 5.738
22 C -0.248 4.248
23 H 0.069 0.931
24 C -0.071 4.071
25 N -0.965 5.965
26 Si 0.971 3.029
27 H -0.280 1.280
28 H -0.293 1.293
29 H -0.279 1.279
30 C -0.116 4.116
31 H 0.071 0.929
32 H 0.096 0.904
33 H 0.067 0.933
34 H 0.074 0.926
35 H 0.072 0.928
36 H 0.045 0.955
37 H 0.090 0.910
38 H 0.192 0.808
39 H 0.181 0.819
40 H 0.412 0.588
41 H 0.075 0.925
42 H 0.070 0.930
43 H 0.078 0.922
44 H 0.079 0.921
45 H 0.060 0.940
46 H 0.062 0.938
47 H 0.015 0.985
48 H 0.010 0.990
49 H 0.377 0.623
50 H 0.252 0.748
51 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.912 -3.792 -0.787 29.170
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.010 3.990
3 C -0.238 4.238
4 O -0.218 6.218
5 C 0.029 3.971
6 C -0.062 4.062
7 N -0.170 5.170
8 C -0.062 4.062
9 C -0.160 4.160
10 C 0.350 3.650
11 O -0.449 6.449
12 N -0.353 5.353
13 C 0.048 3.952
14 H 0.093 0.907
15 C -0.162 4.162
16 C -0.149 4.149
17 C -0.149 4.149
18 C -0.111 4.111
19 H 0.105 0.895
20 C 0.035 3.965
21 N -0.381 5.381
22 C -0.380 4.380
23 H 0.087 0.913
24 C -0.264 4.264
25 N -0.615 5.615
26 Si 0.800 3.200
27 H -0.206 1.206
28 H -0.219 1.219
29 H -0.206 1.206
30 C -0.143 4.143
31 H 0.090 0.910
32 H 0.114 0.886
33 H 0.086 0.914
34 H 0.092 0.908
35 H 0.091 0.909
36 H 0.064 0.936
37 H 0.109 0.891
38 H 0.208 0.792
39 H 0.198 0.802
40 H 0.250 0.750
41 H 0.093 0.907
42 H 0.089 0.911
43 H 0.096 0.904
44 H 0.098 0.902
45 H 0.079 0.921
46 H 0.080 0.920
47 H 0.033 0.967
48 H 0.028 0.972
49 H 0.210 0.790
50 H 0.061 0.939
51 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -28.974 -3.626 -0.604 29.207
hybrid contribution 1.119 1.029 -0.271 1.544
sum -27.856 -2.596 -0.875 27.990
Atomic orbital electron populations
1.21873 0.90204 1.03702 1.04294 1.22789 0.97096 0.92699 0.86380
1.22393 1.01192 0.95785 1.04399 1.86159 1.27897 1.67716 1.40062
1.20076 0.86562 0.95363 0.95103 1.22863 0.92446 0.92822 0.98040
1.67826 1.04099 1.19608 1.25434 1.23168 1.00028 0.95305 0.87680
1.20789 0.95936 1.02665 0.96562 1.18218 0.81841 0.78741 0.86156
1.90749 1.75033 1.41590 1.37569 1.46020 1.15426 1.52402 1.21405
1.21584 0.87652 1.00076 0.85857 0.90718 1.22477 0.98553 0.96835
0.98316 1.22324 0.92690 0.97710 1.02214 1.22406 0.98083 0.98096
0.96276 1.22289 0.92664 0.96315 0.99812 0.89500 1.20780 0.85089
0.95217 0.95421 1.42449 1.11471 1.05664 1.78541 1.19539 0.94778
0.88524 1.35176 0.91303 1.25509 0.99049 0.98912 1.02929 1.69787
1.18243 1.20129 1.53344 0.85259 0.77939 0.78810 0.78035 1.20619
1.21873 1.20555 1.21948 0.93442 1.00013 0.98913 0.91036 0.88556
0.91425 0.90812 0.90912 0.93554 0.89088 0.79157 0.80245 0.75005
0.90663 0.91104 0.90374 0.90233 0.92115 0.91954 0.96683 0.97231
0.79039 0.93918 0.83022
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.20 9.56 71.98 0.69 -0.51 16
2 C 0.07 0.86 2.85 30.59 0.09 0.95 16
3 C -0.18 -2.31 9.20 71.98 0.66 -1.65 16
4 O -0.31 -5.14 9.81 -92.67 -0.91 -6.05 16
5 C 0.08 1.45 6.62 22.56 0.15 1.60 16
6 C 0.10 1.75 11.13 84.83 0.94 2.70 16
7 N -0.46 -9.61 10.34 -194.40 -2.01 -11.62 16
8 C 0.10 1.92 10.71 85.02 0.91 2.83 16
9 C -0.15 -3.47 5.89 -20.01 -0.12 -3.59 16
10 C 0.56 14.74 7.77 86.79 0.67 15.41 16
11 O -0.57 -18.51 16.10 -3.87 -0.06 -18.57 16
12 N -0.70 -16.28 4.95 -441.95 -2.19 -18.47 16
13 C 0.15 4.00 2.79 45.72 0.13 4.13 16
14 H 0.07 2.29 7.30 -2.38 -0.02 2.28 16
15 C -0.12 -2.70 6.59 31.32 0.21 -2.49 16
16 C -0.11 -2.33 6.83 31.67 0.22 -2.12 16
17 C -0.11 -3.11 6.19 31.88 0.20 -2.92 16
18 C -0.09 -2.74 2.58 -9.72 -0.03 -2.76 16
19 H 0.09 2.51 7.73 -2.39 -0.02 2.49 16
20 C 0.16 6.48 5.54 86.38 0.48 6.96 16
21 N -0.74 -37.17 5.49 -343.44 -1.89 -39.06 16
22 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16
23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16
24 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16
25 N -0.96 -58.43 13.06 21.65 0.28 -58.14 16
26 Si 0.97 46.39 29.55 68.60 2.03 48.42 16
27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
28 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
29 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
30 C -0.12 -2.46 7.89 22.83 0.18 -2.28 16
31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16
32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16
33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
34 H 0.07 0.99 6.33 -2.39 -0.02 0.97 16
35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
36 H 0.05 0.76 6.96 -2.39 -0.02 0.75 16
37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16
38 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16
39 H 0.18 2.76 6.42 -2.91 -0.02 2.74 16
40 H 0.41 7.66 6.40 -92.71 -0.59 7.07 16
41 H 0.07 1.53 7.92 -2.39 -0.02 1.51 16
42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
45 H 0.06 1.83 7.97 -2.39 -0.02 1.81 16
46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
47 H 0.02 0.63 8.02 -2.38 -0.02 0.61 16
48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16
49 H 0.38 19.80 7.64 -92.71 -0.71 19.09 16
50 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16
51 H 0.15 3.19 5.27 -2.91 -0.02 3.18 16
Total: -1.00 -70.68 411.81 1.59 -69.09
By element:
Atomic # 1 Polarization: 35.30 SS G_CDS: -0.35 Total: 34.95 kcal
Atomic # 6 Polarization: -7.23 SS G_CDS: 6.69 Total: -0.54 kcal
Atomic # 7 Polarization: -121.50 SS G_CDS: -5.80 Total: -127.30 kcal
Atomic # 8 Polarization: -23.65 SS G_CDS: -0.97 Total: -24.62 kcal
Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal
Total: -70.68 1.59 -69.09 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715565795.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.999 kcal
(2) G-P(sol) polarization free energy of solvation -70.679 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.679 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.088 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds