Wall clock time and date at job start Wed Apr 1 2020 04:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46968 * 2 1 4 4 O 1.42904 * 109.47023 * 119.99527 * 2 1 3 5 5 C 1.35665 * 116.99593 * 90.00699 * 4 2 1 6 6 C 1.39286 * 119.61258 * 179.97438 * 5 4 2 7 7 C 1.38330 * 119.30442 * 180.02562 * 6 5 4 8 8 C 1.38780 * 118.55992 * 359.73404 * 7 6 5 9 9 C 1.39133 * 119.18480 * 0.52598 * 8 7 6 10 10 C 1.48156 * 119.68906 * 179.73324 * 9 8 7 11 11 O 1.21513 * 119.99687 * 359.73070 * 10 9 8 12 12 N 1.34777 * 120.00138 * 179.73145 * 10 9 8 13 13 C 1.47485 * 127.02864 * 0.02562 * 12 10 9 14 14 C 1.54007 * 107.08191 * 205.41110 * 13 12 10 15 15 C 1.54614 * 105.04342 * 358.69964 * 14 13 12 16 16 C 1.52996 * 110.74189 * 96.48562 * 15 14 13 17 17 C 1.53007 * 110.73891 * 219.81218 * 15 14 13 18 18 N 1.46501 * 109.47034 * 179.97438 * 17 15 14 19 19 C 1.36938 * 119.99566 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00130 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99868 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00089 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46793 * 90.00376 * 23 21 19 25 25 H 1.48502 * 109.46893 * 210.00107 * 23 21 19 26 26 H 1.48500 * 109.47046 * 330.00436 * 23 21 19 27 27 C 1.48114 * 127.03607 * 179.97438 * 12 10 9 28 28 N 1.31894 * 119.61966 * 359.97438 * 5 4 2 29 29 H 1.09000 * 109.47511 * 300.00149 * 1 2 3 30 30 H 1.08994 * 109.47398 * 60.00721 * 1 2 3 31 31 H 1.09006 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47511 * 239.99851 * 2 1 3 33 33 H 1.08995 * 109.47502 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.46872 * 299.99717 * 3 2 1 35 35 H 1.09006 * 109.47517 * 59.99518 * 3 2 1 36 36 H 1.08005 * 120.35103 * 0.04373 * 6 5 4 37 37 H 1.08003 * 120.72193 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.41013 * 180.26406 * 8 7 6 39 39 H 1.09003 * 109.91439 * 86.05464 * 13 12 10 40 40 H 1.08996 * 110.08042 * 324.86301 * 13 12 10 41 41 H 1.09004 * 110.32648 * 117.59017 * 14 13 12 42 42 H 1.09002 * 110.32949 * 239.80336 * 14 13 12 43 43 H 1.09000 * 109.47351 * 60.00268 * 16 15 14 44 44 H 1.09005 * 109.47377 * 179.97438 * 16 15 14 45 45 H 1.08993 * 109.47288 * 299.99900 * 16 15 14 46 46 H 1.08998 * 109.46797 * 299.99960 * 17 15 14 47 47 H 1.08997 * 109.46926 * 59.99882 * 17 15 14 48 48 H 0.96995 * 120.00232 * 359.97438 * 18 17 15 49 49 H 0.96994 * 120.00565 * 179.97438 * 22 21 19 50 50 H 1.08998 * 110.66152 * 259.18486 * 27 12 10 51 51 H 1.08999 * 110.65867 * 22.13220 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2117 -2.0107 1.0653 6 6 2.6760 -2.7215 2.1695 7 6 2.8837 -4.0847 2.0588 8 6 2.6148 -4.7002 0.8444 9 6 2.1581 -3.9298 -0.2204 10 6 1.8732 -4.5745 -1.5235 11 8 2.0433 -5.7699 -1.6600 12 7 1.4253 -3.8351 -2.5576 13 6 1.1662 -2.3832 -2.5648 14 6 0.1140 -2.1170 -3.6574 15 6 -0.1745 -3.5013 -4.2826 16 6 -1.4198 -4.1304 -3.6549 17 6 -0.3292 -3.3886 -5.8007 18 7 -0.6007 -4.7137 -6.3635 19 6 -0.7775 -4.8609 -7.7135 20 1 -0.7164 -4.0004 -8.3631 21 6 -1.0342 -6.1165 -8.2469 22 7 -1.1082 -7.1653 -7.4552 23 14 -1.2762 -6.3173 -10.0883 24 1 0.0343 -6.5848 -10.7334 25 1 -2.1959 -7.4545 -10.3455 26 1 -1.8592 -5.0722 -10.6496 27 6 1.0937 -4.3142 -3.9193 28 7 1.9694 -2.6225 -0.0777 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8901 35 1 1.6765 1.9564 0.8900 36 1 2.8715 -2.2138 3.1026 37 1 3.2428 -4.6583 2.9005 38 1 2.7623 -5.7636 0.7260 39 1 2.0848 -1.8433 -2.7947 40 1 0.7826 -2.0667 -1.5950 41 1 -0.7934 -1.7040 -3.2166 42 1 0.5134 -1.4373 -4.4102 43 1 -2.2793 -3.4819 -3.8243 44 1 -1.6042 -5.1036 -4.1101 45 1 -1.2636 -4.2540 -2.5833 46 1 -1.1567 -2.7183 -6.0328 47 1 0.5907 -2.9929 -6.2312 48 1 -0.6551 -5.4866 -5.7801 49 1 -1.2879 -8.0426 -7.8279 50 1 1.9046 -4.0926 -4.6131 51 1 0.8790 -5.3828 -3.9093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724257563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:43 Heat of formation + Delta-G solvation = -15.531598 kcal Electronic energy + Delta-G solvation = -31684.430628 eV Core-core repulsion = 27584.910348 eV Total energy + Delta-G solvation = -4099.520281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24782 -39.87027 -38.67051 -37.61577 -34.84209 -33.65001 -33.16239 -32.33948 -30.64489 -30.30057 -29.14036 -27.59954 -26.86401 -25.83088 -24.65036 -23.71665 -23.17118 -21.92104 -21.51393 -20.35343 -18.80416 -18.16491 -17.73141 -16.88420 -16.40349 -16.15525 -16.06020 -15.75483 -15.50553 -14.73520 -14.65673 -14.34294 -14.28397 -14.02048 -13.68825 -13.55737 -13.34757 -13.26968 -12.90309 -12.68673 -12.63988 -12.57172 -12.30884 -12.26272 -12.17886 -12.00453 -11.53556 -11.50054 -11.26405 -11.01458 -10.97540 -10.81080 -10.59777 -10.44280 -10.32758 -10.28804 -10.22729 -9.90041 -9.62050 -9.53321 -8.88547 -8.84735 -8.47218 -6.88705 -5.72704 -3.01607 0.40579 0.94560 2.64072 2.67857 2.92310 3.46020 3.50822 3.52776 3.62815 3.76367 4.40481 4.52300 4.60007 4.61633 4.62816 4.68776 4.83127 4.84024 4.88783 4.92118 5.07747 5.15036 5.22497 5.38759 5.43754 5.45334 5.50125 5.51951 5.59740 5.62413 5.73026 5.76011 5.80867 5.82329 5.92497 5.96944 6.04748 6.08648 6.11921 6.16616 6.18779 6.34176 6.42990 6.56227 6.69224 6.79510 6.88640 6.92443 7.34419 7.62120 7.72889 8.15292 8.45803 9.57058 10.14654 10.49136 11.49990 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.002641 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.401799 B =10599.772165 C =11882.855883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 C -0.151 4.151 4 O -0.301 6.301 5 C 0.321 3.679 6 C -0.172 4.172 7 C -0.046 4.046 8 C -0.150 4.150 9 C 0.130 3.870 10 C 0.581 3.419 11 O -0.529 6.529 12 N -0.596 5.596 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.078 4.078 16 C -0.129 4.129 17 C 0.169 3.831 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.118 3.882 28 N -0.512 5.512 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.023 0.977 47 H 0.021 0.979 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.077 0.923 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 16.169 22.329 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 C -0.208 4.208 4 O -0.208 6.208 5 C 0.140 3.860 6 C -0.193 4.193 7 C -0.071 4.071 8 C -0.171 4.171 9 C -0.007 4.007 10 C 0.367 3.633 11 O -0.405 6.405 12 N -0.327 5.327 13 C -0.023 4.023 14 C -0.167 4.167 15 C -0.079 4.079 16 C -0.186 4.186 17 C 0.041 3.959 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.003 4.003 28 N -0.239 5.239 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.965 16.171 21.634 27.893 hybrid contribution 0.074 -0.775 -0.358 0.857 sum 7.040 15.396 21.276 27.189 Atomic orbital electron populations 1.22263 0.94631 1.03061 1.02953 1.22511 0.94591 0.92985 0.87934 1.21911 1.01965 0.93760 1.03142 1.86308 1.80145 1.15530 1.38822 1.19832 0.91718 0.84888 0.89607 1.21283 1.04670 0.94438 0.98928 1.21447 0.94766 0.93405 0.97514 1.22002 1.00277 1.02443 0.92427 1.20840 0.96955 0.88181 0.94728 1.17433 0.78198 0.85568 0.82084 1.90832 1.53304 1.13725 1.82628 1.48604 1.62888 1.09769 1.11486 1.22486 0.98293 0.80498 1.00991 1.22666 0.98846 0.97525 0.97630 1.21847 0.94889 0.94011 0.97151 1.21688 0.95924 1.01950 0.99027 1.20624 0.97550 0.89736 0.87948 1.42415 1.86182 1.03542 1.05452 1.19204 1.40743 0.93293 0.83873 0.91237 1.24736 1.02830 0.95665 0.97688 1.69656 1.56102 0.98649 1.33604 0.86205 0.77487 0.77123 0.85450 1.21773 1.21826 1.20832 1.22671 0.96371 1.00696 0.80603 1.67411 1.20526 1.11358 1.24591 0.91913 0.90631 0.91897 0.88908 0.91840 0.90234 0.91663 0.83762 0.83346 0.83082 0.92187 0.88138 0.90747 0.90445 0.92713 0.91115 0.93808 0.95890 0.96130 0.78015 0.93493 0.90479 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.04 37.16 0.34 -0.96 16 2 C 0.08 0.61 2.90 -26.73 -0.08 0.54 16 3 C -0.15 -0.92 9.56 37.16 0.36 -0.57 16 4 O -0.30 -2.90 9.76 -18.70 -0.18 -3.08 16 5 C 0.32 3.31 7.46 -17.14 -0.13 3.18 16 6 C -0.17 -1.42 10.05 -39.16 -0.39 -1.82 16 7 C -0.05 -0.36 10.16 -39.35 -0.40 -0.76 16 8 C -0.15 -1.61 9.63 -39.05 -0.38 -1.99 16 9 C 0.13 1.69 6.72 -83.02 -0.56 1.13 16 10 C 0.58 9.36 7.88 -12.19 -0.10 9.26 16 11 O -0.53 -10.17 16.52 5.35 0.09 -10.08 16 12 N -0.60 -9.09 3.19 -170.75 -0.54 -9.63 16 13 C 0.10 1.22 5.34 -2.98 -0.02 1.20 16 14 C -0.13 -1.57 6.09 -25.36 -0.15 -1.72 16 15 C -0.08 -1.25 0.65 -152.63 -0.10 -1.35 16 16 C -0.13 -2.14 8.33 37.16 0.31 -1.83 16 17 C 0.17 3.31 5.11 -4.04 -0.02 3.29 16 18 N -0.73 -18.24 5.16 -59.91 -0.31 -18.55 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 C 0.12 2.03 5.68 -2.12 -0.01 2.02 16 28 N -0.51 -5.96 5.20 -9.87 -0.05 -6.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.57 7.63 -51.93 -0.40 0.18 16 32 H 0.09 0.83 5.37 -51.93 -0.28 0.55 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.15 1.59 7.63 -52.48 -0.40 1.19 16 39 H 0.06 0.68 8.05 -51.93 -0.42 0.27 16 40 H 0.10 1.15 3.83 -51.93 -0.20 0.95 16 41 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 42 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.38 6.69 -51.93 -0.35 1.03 16 45 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 48 H 0.39 10.19 6.22 -40.82 -0.25 9.94 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.08 1.34 8.02 -51.93 -0.42 0.93 16 51 H 0.09 1.82 7.76 -51.93 -0.40 1.41 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -33.07 406.16 -8.87 -41.94 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.12 Total: 7.15 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.58 Total: 2.32 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.18 Total: -61.92 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.09 Total: -13.17 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.07 -8.87 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724257563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.413 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds