Wall clock time and date at job start Wed Apr 1 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46968 * 2 1 4 4 O 1.42904 * 109.47023 * 119.99527 * 2 1 3 5 5 C 1.35665 * 116.99593 * 90.00699 * 4 2 1 6 6 C 1.39286 * 119.61258 * 179.97438 * 5 4 2 7 7 C 1.38330 * 119.30442 * 180.02562 * 6 5 4 8 8 C 1.38780 * 118.55992 * 359.73404 * 7 6 5 9 9 C 1.39133 * 119.18480 * 0.52598 * 8 7 6 10 10 C 1.48156 * 119.68906 * 179.73324 * 9 8 7 11 11 O 1.21513 * 119.99687 * 359.73070 * 10 9 8 12 12 N 1.34777 * 120.00138 * 179.73145 * 10 9 8 13 13 C 1.47485 * 127.02864 * 0.02562 * 12 10 9 14 14 C 1.54007 * 107.08191 * 205.41110 * 13 12 10 15 15 C 1.54614 * 105.04342 * 358.69964 * 14 13 12 16 16 C 1.52996 * 110.74189 * 96.48562 * 15 14 13 17 17 C 1.53007 * 110.73891 * 219.81218 * 15 14 13 18 18 N 1.46501 * 109.47034 * 179.97438 * 17 15 14 19 19 C 1.36938 * 119.99566 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00130 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99868 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00089 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46793 * 90.00376 * 23 21 19 25 25 H 1.48502 * 109.46893 * 210.00107 * 23 21 19 26 26 H 1.48500 * 109.47046 * 330.00436 * 23 21 19 27 27 C 1.48114 * 127.03607 * 179.97438 * 12 10 9 28 28 N 1.31894 * 119.61966 * 359.97438 * 5 4 2 29 29 H 1.09000 * 109.47511 * 300.00149 * 1 2 3 30 30 H 1.08994 * 109.47398 * 60.00721 * 1 2 3 31 31 H 1.09006 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47511 * 239.99851 * 2 1 3 33 33 H 1.08995 * 109.47502 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.46872 * 299.99717 * 3 2 1 35 35 H 1.09006 * 109.47517 * 59.99518 * 3 2 1 36 36 H 1.08005 * 120.35103 * 0.04373 * 6 5 4 37 37 H 1.08003 * 120.72193 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.41013 * 180.26406 * 8 7 6 39 39 H 1.09003 * 109.91439 * 86.05464 * 13 12 10 40 40 H 1.08996 * 110.08042 * 324.86301 * 13 12 10 41 41 H 1.09004 * 110.32648 * 117.59017 * 14 13 12 42 42 H 1.09002 * 110.32949 * 239.80336 * 14 13 12 43 43 H 1.09000 * 109.47351 * 60.00268 * 16 15 14 44 44 H 1.09005 * 109.47377 * 179.97438 * 16 15 14 45 45 H 1.08993 * 109.47288 * 299.99900 * 16 15 14 46 46 H 1.08998 * 109.46797 * 299.99960 * 17 15 14 47 47 H 1.08997 * 109.46926 * 59.99882 * 17 15 14 48 48 H 0.96995 * 120.00232 * 359.97438 * 18 17 15 49 49 H 0.96994 * 120.00565 * 179.97438 * 22 21 19 50 50 H 1.08998 * 110.66152 * 259.18486 * 27 12 10 51 51 H 1.08999 * 110.65867 * 22.13220 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2117 -2.0107 1.0653 6 6 2.6760 -2.7215 2.1695 7 6 2.8837 -4.0847 2.0588 8 6 2.6148 -4.7002 0.8444 9 6 2.1581 -3.9298 -0.2204 10 6 1.8732 -4.5745 -1.5235 11 8 2.0433 -5.7699 -1.6600 12 7 1.4253 -3.8351 -2.5576 13 6 1.1662 -2.3832 -2.5648 14 6 0.1140 -2.1170 -3.6574 15 6 -0.1745 -3.5013 -4.2826 16 6 -1.4198 -4.1304 -3.6549 17 6 -0.3292 -3.3886 -5.8007 18 7 -0.6007 -4.7137 -6.3635 19 6 -0.7775 -4.8609 -7.7135 20 1 -0.7164 -4.0004 -8.3631 21 6 -1.0342 -6.1165 -8.2469 22 7 -1.1082 -7.1653 -7.4552 23 14 -1.2762 -6.3173 -10.0883 24 1 0.0343 -6.5848 -10.7334 25 1 -2.1959 -7.4545 -10.3455 26 1 -1.8592 -5.0722 -10.6496 27 6 1.0937 -4.3142 -3.9193 28 7 1.9694 -2.6225 -0.0777 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8901 35 1 1.6765 1.9564 0.8900 36 1 2.8715 -2.2138 3.1026 37 1 3.2428 -4.6583 2.9005 38 1 2.7623 -5.7636 0.7260 39 1 2.0848 -1.8433 -2.7947 40 1 0.7826 -2.0667 -1.5950 41 1 -0.7934 -1.7040 -3.2166 42 1 0.5134 -1.4373 -4.4102 43 1 -2.2793 -3.4819 -3.8243 44 1 -1.6042 -5.1036 -4.1101 45 1 -1.2636 -4.2540 -2.5833 46 1 -1.1567 -2.7183 -6.0328 47 1 0.5907 -2.9929 -6.2312 48 1 -0.6551 -5.4866 -5.7801 49 1 -1.2879 -8.0426 -7.8279 50 1 1.9046 -4.0926 -4.6131 51 1 0.8790 -5.3828 -3.9093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724257563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:42 Heat of formation + Delta-G solvation = -36.574777 kcal Electronic energy + Delta-G solvation = -31685.343129 eV Core-core repulsion = 27584.910348 eV Total energy + Delta-G solvation = -4100.432781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.11989 -40.97675 -39.63572 -38.72091 -36.52682 -34.60082 -34.16514 -33.53139 -32.18389 -31.31699 -30.44256 -28.17955 -28.09419 -27.46320 -25.83937 -24.86435 -24.28864 -23.36145 -22.15545 -21.34309 -20.20342 -19.34694 -18.91749 -18.40147 -17.30360 -17.13789 -16.86902 -16.83396 -16.64625 -16.39550 -15.66104 -15.52838 -15.41712 -15.24774 -14.98093 -14.77234 -14.55091 -14.33163 -13.95899 -13.92824 -13.60203 -13.48872 -13.23948 -13.17329 -13.10223 -13.00988 -12.88939 -12.78857 -12.78098 -12.53896 -12.15164 -12.10539 -11.86471 -11.79651 -11.66417 -11.59233 -11.50423 -11.32965 -10.99609 -10.92949 -10.48981 -9.85669 -9.52806 -8.96803 -7.92545 -5.21197 -0.44620 0.22364 1.47259 1.49387 1.57681 1.61287 1.75068 1.99634 2.57208 2.74093 2.85034 3.38957 3.44048 3.62892 3.72980 3.84998 3.88847 3.98655 3.99839 4.08107 4.16166 4.20001 4.31053 4.32912 4.34162 4.38419 4.45278 4.65789 4.71067 4.75572 4.76404 4.86999 4.88946 4.92264 4.93653 4.96813 4.99721 5.05364 5.06888 5.09825 5.12239 5.26680 5.29158 5.33468 5.35533 5.39822 5.47255 5.52384 6.17705 6.28948 6.40893 6.55733 6.95187 7.35416 8.12497 8.34417 9.31217 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.002641 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.401799 B =10599.772165 C =11882.855883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.307 3.693 6 C -0.158 4.158 7 C -0.033 4.033 8 C -0.154 4.154 9 C 0.103 3.897 10 C 0.573 3.427 11 O -0.576 6.576 12 N -0.597 5.597 13 C 0.104 3.896 14 C -0.116 4.116 15 C -0.070 4.070 16 C -0.120 4.120 17 C 0.169 3.831 18 N -0.745 5.745 19 C -0.240 4.240 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.973 3.027 24 H -0.289 1.289 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.121 3.879 28 N -0.517 5.517 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.176 0.824 37 H 0.189 0.811 38 H 0.146 0.854 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.032 0.968 45 H 0.049 0.951 46 H 0.034 0.966 47 H 0.028 0.972 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.071 0.929 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 19.497 23.906 31.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.212 6.212 5 C 0.126 3.874 6 C -0.179 4.179 7 C -0.057 4.057 8 C -0.176 4.176 9 C -0.033 4.033 10 C 0.362 3.638 11 O -0.456 6.456 12 N -0.327 5.327 13 C -0.018 4.018 14 C -0.154 4.154 15 C -0.071 4.071 16 C -0.177 4.177 17 C 0.042 3.958 18 N -0.388 5.388 19 C -0.372 4.372 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.803 3.197 24 H -0.216 1.216 25 H -0.225 1.225 26 H -0.191 1.191 27 C -0.002 4.002 28 N -0.245 5.245 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.193 0.807 37 H 0.206 0.794 38 H 0.163 0.837 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.206 0.794 49 H 0.058 0.942 50 H 0.089 0.911 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.321 19.587 23.212 31.242 hybrid contribution 0.009 -1.714 -0.732 1.864 sum 7.330 17.873 22.479 29.639 Atomic orbital electron populations 1.22243 0.94207 1.02139 1.03957 1.22677 0.94975 0.93797 0.87163 1.21914 1.01814 0.92496 1.04130 1.86322 1.80242 1.15101 1.39498 1.20170 0.92091 0.85323 0.89838 1.21725 1.02344 0.94500 0.99323 1.21852 0.93216 0.93482 0.97183 1.22137 1.00013 1.02275 0.93162 1.20410 1.00048 0.89131 0.93678 1.18048 0.77289 0.85248 0.83264 1.90788 1.55367 1.15764 1.83653 1.48684 1.62495 1.11076 1.10447 1.22653 0.98962 0.78497 1.01679 1.22674 0.99940 0.95030 0.97801 1.21713 0.93835 0.96411 0.95172 1.21585 0.96865 1.00292 0.98980 1.20800 0.97812 0.87229 0.89953 1.42654 1.86112 1.05325 1.04682 1.19661 1.38741 0.93478 0.85313 0.90263 1.25584 1.03844 0.95581 1.02099 1.69838 1.58192 0.98869 1.35437 0.85135 0.77096 0.77224 0.80277 1.21642 1.22505 1.19087 1.22437 0.96951 0.98668 0.82122 1.67212 1.20962 1.10583 1.25707 0.91504 0.89092 0.93670 0.89824 0.92071 0.88693 0.91235 0.80694 0.79353 0.83661 0.90933 0.86972 0.88505 0.88477 0.91150 0.94919 0.93243 0.94854 0.95447 0.79424 0.94194 0.91062 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.04 71.98 0.65 -1.48 16 2 C 0.07 0.97 2.90 30.59 0.09 1.06 16 3 C -0.15 -1.40 9.56 71.98 0.69 -0.71 16 4 O -0.30 -5.14 9.76 -89.82 -0.88 -6.02 16 5 C 0.31 5.69 7.46 84.94 0.63 6.32 16 6 C -0.16 -2.09 10.05 22.54 0.23 -1.86 16 7 C -0.03 -0.41 10.16 22.42 0.23 -0.18 16 8 C -0.15 -3.21 9.63 22.61 0.22 -3.00 16 9 C 0.10 2.68 6.72 41.84 0.28 2.96 16 10 C 0.57 19.38 7.88 86.88 0.68 20.07 16 11 O -0.58 -23.90 16.52 -3.76 -0.06 -23.97 16 12 N -0.60 -18.70 3.19 -812.43 -2.59 -21.29 16 13 C 0.10 2.39 5.34 86.53 0.46 2.85 16 14 C -0.12 -2.57 6.09 31.48 0.19 -2.38 16 15 C -0.07 -2.24 0.65 -50.96 -0.03 -2.28 16 16 C -0.12 -4.06 8.33 71.98 0.60 -3.46 16 17 C 0.17 6.52 5.11 86.38 0.44 6.96 16 18 N -0.74 -38.10 5.16 -343.44 -1.77 -39.87 16 19 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 22 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 23 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 C 0.12 4.37 5.68 86.74 0.49 4.86 16 28 N -0.52 -11.49 5.20 -298.21 -1.55 -13.04 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.74 7.63 -2.38 -0.02 0.72 16 32 H 0.08 1.32 5.37 -2.39 -0.01 1.31 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.15 3.14 7.63 -2.91 -0.02 3.12 16 39 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 40 H 0.11 2.39 3.83 -2.39 -0.01 2.38 16 41 H 0.10 1.78 7.86 -2.39 -0.02 1.76 16 42 H 0.10 1.84 7.85 -2.39 -0.02 1.82 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.03 1.34 6.69 -2.38 -0.02 1.33 16 45 H 0.05 1.59 8.07 -2.39 -0.02 1.57 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 48 H 0.37 20.82 6.22 -92.71 -0.58 20.25 16 49 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 50 H 0.07 2.61 8.02 -2.39 -0.02 2.59 16 51 H 0.05 2.21 7.76 -2.39 -0.02 2.19 16 Total: -1.00 -75.66 406.16 2.98 -72.69 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.36 Total: 30.79 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 7.16 Total: 12.90 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -5.63 Total: -135.47 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.94 Total: -29.98 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -75.66 2.98 -72.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724257563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.111 kcal (2) G-P(sol) polarization free energy of solvation -75.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds