Wall clock time and date at job start Wed Apr 1 2020 05:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47027 * 2 1 4 4 O 1.21284 * 119.99711 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00011 * 180.02562 * 3 2 1 6 6 C 1.39952 * 120.00162 * 184.21941 * 5 3 2 7 7 C 1.38991 * 120.00238 * 144.51793 * 6 5 3 8 8 C 1.38214 * 120.22373 * 180.02562 * 7 6 5 9 9 C 1.38024 * 120.22167 * 359.97438 * 8 7 6 10 10 C 1.39581 * 119.99719 * 0.06370 * 9 8 7 11 11 C 1.47863 * 120.11188 * 179.97438 * 10 9 8 12 12 O 1.21545 * 119.99887 * 137.94601 * 11 10 9 13 13 N 1.34777 * 119.99769 * 317.93835 * 11 10 9 14 14 C 1.46499 * 119.99981 * 4.62283 * 13 11 10 15 15 C 1.46495 * 120.00200 * 184.61476 * 13 11 10 16 16 C 1.53006 * 109.46740 * 90.00366 * 15 13 11 17 17 C 1.53000 * 109.47069 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47167 * 179.97438 * 17 16 15 19 19 C 1.46496 * 119.99680 * 90.00317 * 18 17 16 20 20 C 1.36934 * 120.00248 * 269.99806 * 18 17 16 21 21 H 1.08005 * 119.99800 * 30.66865 * 20 18 17 22 22 C 1.38808 * 120.00478 * 210.66711 * 20 18 17 23 23 N 1.31622 * 119.99727 * 6.90295 * 22 20 18 24 24 Si 1.86803 * 120.00344 * 186.90391 * 22 20 18 25 25 H 1.48497 * 109.47148 * 89.99465 * 24 22 20 26 26 H 1.48493 * 109.47085 * 210.00101 * 24 22 20 27 27 H 1.48502 * 109.46850 * 329.99601 * 24 22 20 28 28 C 1.38596 * 119.99689 * 324.53718 * 6 5 3 29 29 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46886 * 299.99668 * 1 2 3 31 31 H 1.08999 * 109.47390 * 60.00093 * 1 2 3 32 32 H 1.09003 * 109.46886 * 240.00331 * 2 1 3 33 33 H 1.08999 * 109.47390 * 119.99906 * 2 1 3 34 34 H 0.97004 * 120.00434 * 4.21635 * 5 3 2 35 35 H 1.07994 * 119.88672 * 359.97438 * 7 6 5 36 36 H 1.07990 * 119.89044 * 179.97438 * 8 7 6 37 37 H 1.07996 * 120.00163 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.47684 * 91.24415 * 14 13 11 39 39 H 1.09007 * 109.47308 * 211.24368 * 14 13 11 40 40 H 1.09007 * 109.47433 * 331.24188 * 14 13 11 41 41 H 1.09003 * 109.47697 * 210.00316 * 15 13 11 42 42 H 1.09000 * 109.47352 * 330.00892 * 15 13 11 43 43 H 1.09001 * 109.47282 * 299.99948 * 16 15 13 44 44 H 1.08997 * 109.47074 * 60.00592 * 16 15 13 45 45 H 1.08996 * 109.47521 * 300.00329 * 17 16 15 46 46 H 1.09004 * 109.47338 * 59.99816 * 17 16 15 47 47 H 1.09005 * 109.47321 * 94.48423 * 19 18 17 48 48 H 1.09004 * 109.46891 * 214.48557 * 19 18 17 49 49 H 1.08996 * 109.47263 * 334.48041 * 19 18 17 50 50 H 0.96998 * 120.00108 * 180.02562 * 23 22 20 51 51 H 1.08001 * 120.11466 * 359.72014 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8245 2.9834 0.0887 7 6 4.9900 3.2610 0.7932 8 6 5.4552 4.5593 0.8846 9 6 4.7658 5.5887 0.2765 10 6 3.5939 5.3206 -0.4327 11 6 2.8530 6.4216 -1.0848 12 8 2.3944 6.2687 -2.2000 13 7 2.6860 7.5946 -0.4424 14 6 3.3237 7.8148 0.8580 15 6 1.8670 8.6494 -1.0446 16 6 0.4143 8.4879 -0.5922 17 6 -0.4413 9.5892 -1.2215 18 7 -1.8324 9.4342 -0.7889 19 6 -2.3003 10.1047 0.4267 20 6 -2.6952 8.6628 -1.5207 21 1 -2.3232 7.8131 -2.0740 22 6 -4.0478 8.9728 -1.5515 23 7 -4.4817 10.0821 -0.9914 24 14 -5.2525 7.8158 -2.3880 25 1 -5.7555 6.8269 -1.4010 26 1 -6.3926 8.5967 -2.9315 27 1 -4.5668 7.1041 -3.4964 28 6 3.1247 4.0101 -0.5253 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.9873 0.9321 -0.0627 35 1 5.5335 2.4596 1.2715 36 1 6.3611 4.7689 1.4338 37 1 5.1327 6.6018 0.3498 38 1 4.3046 8.2666 0.7099 39 1 2.7039 8.4808 1.4585 40 1 3.4370 6.8610 1.3734 41 1 2.2397 9.6239 -0.7287 42 1 1.9196 8.5749 -2.1307 43 1 0.0415 7.5136 -0.9080 44 1 0.3615 8.5625 0.4940 45 1 -0.0688 10.5638 -0.9061 46 1 -0.3885 9.5143 -2.3077 47 1 -2.7534 11.0604 0.1631 48 1 -3.0391 9.4777 0.9259 49 1 -1.4567 10.2747 1.0956 50 1 -5.4269 10.2986 -1.0125 51 1 2.2211 3.7959 -1.0768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724852777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:01 Heat of formation + Delta-G solvation = -15.587831 kcal Electronic energy + Delta-G solvation = -30402.402449 eV Core-core repulsion = 26302.879730 eV Total energy + Delta-G solvation = -4099.522719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.00444 -39.98211 -38.31009 -36.18461 -35.37061 -34.99476 -33.22393 -32.39059 -31.31323 -30.32226 -29.58858 -27.00598 -25.95396 -25.52247 -25.13876 -23.60752 -22.59586 -21.88320 -20.58199 -20.13651 -19.67807 -17.93338 -17.57051 -16.73826 -16.55738 -16.18112 -16.16413 -15.90896 -15.43118 -14.76401 -14.69436 -14.48840 -14.14591 -14.00531 -13.65359 -13.59820 -13.22938 -13.14370 -12.89832 -12.78336 -12.64756 -12.51319 -12.41166 -12.09278 -11.94724 -11.71978 -11.63696 -11.50254 -11.18670 -10.83322 -10.74597 -10.69032 -10.59931 -10.35356 -10.08969 -10.07902 -9.80324 -9.73902 -9.60418 -9.16355 -8.58861 -8.47396 -8.37700 -6.49841 -5.60039 -3.14141 0.70897 1.06057 2.24729 2.61642 2.77150 3.10086 3.47709 3.52786 3.56780 3.59547 4.24339 4.39679 4.58393 4.61507 4.66356 4.70829 4.77475 4.85141 5.08535 5.11613 5.20375 5.20838 5.28249 5.42267 5.47896 5.54055 5.56487 5.62209 5.62818 5.64466 5.89785 5.91885 5.98492 6.01445 6.07366 6.13554 6.16827 6.23515 6.27654 6.58507 6.66072 6.74895 6.85735 6.97229 6.98204 7.16632 7.44544 7.45676 7.79070 7.83700 7.95747 8.25080 8.58662 9.38510 9.99720 10.52436 11.43735 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.002890 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.312221 B = 9685.686750 C =12274.536015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.505 3.495 4 O -0.507 6.507 5 N -0.678 5.678 6 C 0.137 3.863 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.108 4.108 10 C -0.104 4.104 11 C 0.556 3.444 12 O -0.526 6.526 13 N -0.607 5.607 14 C 0.071 3.929 15 C 0.116 3.884 16 C -0.151 4.151 17 C 0.156 3.844 18 N -0.602 5.602 19 C 0.162 3.838 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.005 3.995 23 N -0.909 5.909 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.068 4.068 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.048 0.952 47 H 0.032 0.968 48 H 0.035 0.965 49 H -0.004 1.004 50 H 0.251 0.749 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.897 -17.590 7.456 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.293 3.707 4 O -0.380 6.380 5 N -0.324 5.324 6 C 0.043 3.957 7 C -0.148 4.148 8 C -0.127 4.127 9 C -0.128 4.128 10 C -0.108 4.108 11 C 0.344 3.656 12 O -0.403 6.403 13 N -0.340 5.340 14 C -0.072 4.072 15 C -0.006 4.006 16 C -0.193 4.193 17 C 0.028 3.972 18 N -0.324 5.324 19 C 0.017 3.983 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.193 4.193 23 N -0.553 5.553 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.088 4.088 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.247 0.753 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.014 0.986 50 H 0.061 0.939 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 23.808 -16.950 6.879 30.024 hybrid contribution -0.333 -1.019 -0.191 1.088 sum 23.475 -17.968 6.688 30.309 Atomic orbital electron populations 1.21577 0.92417 1.01944 1.03987 1.21634 0.99204 0.92595 1.04512 1.21136 0.81479 0.92647 0.75477 1.90815 1.54854 1.46169 1.46169 1.43566 1.08083 1.06729 1.74011 1.17602 0.95382 0.84548 0.98188 1.21029 0.96826 0.97705 0.99283 1.20861 1.00005 0.91765 1.00098 1.21525 0.94442 1.00139 0.96652 1.19853 0.96795 0.93805 1.00352 1.18298 0.79730 0.82091 0.85483 1.90810 1.49412 1.81176 1.18862 1.47801 1.50349 1.15106 1.20749 1.22103 0.97474 1.02749 0.84868 1.21631 0.91039 0.88543 0.99379 1.22617 0.93067 1.02903 1.00685 1.20640 0.85413 0.93857 0.97286 1.43792 1.05489 1.57456 1.25691 1.20783 0.94017 0.97413 0.86102 1.19178 0.88741 1.05473 1.24943 0.91778 1.25209 0.98118 0.96392 0.99573 1.70022 1.13802 1.23425 1.48093 0.86272 0.80879 0.80076 0.79495 1.21478 1.21688 1.20305 1.21309 1.00479 0.90312 0.96747 0.91774 0.91682 0.91560 0.88579 0.88618 0.75311 0.85407 0.84996 0.84753 0.92517 0.90787 0.90448 0.90759 0.89798 0.91845 0.92916 0.94807 0.93369 0.94960 0.94659 0.98569 0.93862 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.14 -0.86 6.42 -27.88 -0.18 -1.04 16 3 C 0.50 5.18 7.67 -10.99 -0.08 5.09 16 4 O -0.51 -7.94 13.46 5.55 0.07 -7.86 16 5 N -0.68 -5.42 5.33 -9.89 -0.05 -5.48 16 6 C 0.14 1.44 6.29 -83.74 -0.53 0.91 16 7 C -0.13 -0.99 9.96 -39.31 -0.39 -1.38 16 8 C -0.11 -0.82 10.02 -39.67 -0.40 -1.22 16 9 C -0.11 -1.05 7.49 -39.16 -0.29 -1.34 16 10 C -0.10 -1.43 5.14 -104.99 -0.54 -1.97 16 11 C 0.56 9.33 7.32 -12.32 -0.09 9.24 16 12 O -0.53 -11.02 16.50 5.33 0.09 -10.93 16 13 N -0.61 -8.85 2.87 -182.68 -0.52 -9.38 16 14 C 0.07 0.72 8.93 59.85 0.53 1.25 16 15 C 0.12 1.84 5.45 -4.04 -0.02 1.82 16 16 C -0.15 -2.97 5.86 -26.73 -0.16 -3.13 16 17 C 0.16 3.47 5.65 -4.04 -0.02 3.45 16 18 N -0.60 -16.38 2.90 -181.12 -0.53 -16.91 16 19 C 0.16 4.23 9.00 59.84 0.54 4.77 16 20 C -0.25 -7.57 9.59 -15.06 -0.14 -7.71 16 21 H 0.06 1.93 7.84 -52.48 -0.41 1.52 16 22 C 0.01 0.16 5.22 -17.43 -0.09 0.07 16 23 N -0.91 -27.94 10.88 55.49 0.60 -27.33 16 24 Si 0.90 23.36 29.56 -169.99 -5.02 18.34 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 28 C -0.07 -0.96 8.29 -38.98 -0.32 -1.29 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.41 1.56 8.82 -40.82 -0.36 1.20 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.13 1.03 5.77 -52.49 -0.30 0.73 16 38 H 0.06 0.42 7.28 -51.93 -0.38 0.05 16 39 H 0.07 0.72 8.08 -51.92 -0.42 0.30 16 40 H 0.08 0.75 5.50 -51.92 -0.29 0.46 16 41 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.08 1.44 7.36 -51.93 -0.38 1.06 16 43 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 46 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 47 H 0.03 0.90 7.24 -51.93 -0.38 0.52 16 48 H 0.03 0.98 7.65 -51.93 -0.40 0.58 16 49 H 0.00 -0.10 8.04 -51.93 -0.42 -0.51 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.15 2.56 6.27 -52.49 -0.33 2.23 16 LS Contribution 415.70 15.07 6.26 6.26 Total: -1.00 -39.13 415.70 -9.20 -48.33 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.25 Total: -1.75 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.85 Total: 6.71 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.50 Total: -59.10 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.16 Total: -18.79 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -39.13 -9.20 -48.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724852777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.738 kcal (2) G-P(sol) polarization free energy of solvation -39.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds