Wall clock time and date at job start Wed Apr 1 2020 05:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47027 * 2 1 4 4 O 1.21284 * 119.99711 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00011 * 180.02562 * 3 2 1 6 6 C 1.39952 * 120.00162 * 184.21941 * 5 3 2 7 7 C 1.38991 * 120.00238 * 144.51793 * 6 5 3 8 8 C 1.38214 * 120.22373 * 180.02562 * 7 6 5 9 9 C 1.38024 * 120.22167 * 359.97438 * 8 7 6 10 10 C 1.39581 * 119.99719 * 0.06370 * 9 8 7 11 11 C 1.47863 * 120.11188 * 179.97438 * 10 9 8 12 12 O 1.21545 * 119.99887 * 137.94601 * 11 10 9 13 13 N 1.34777 * 119.99769 * 317.93835 * 11 10 9 14 14 C 1.46499 * 119.99981 * 4.62283 * 13 11 10 15 15 C 1.46495 * 120.00200 * 184.61476 * 13 11 10 16 16 C 1.53006 * 109.46740 * 90.00366 * 15 13 11 17 17 C 1.53000 * 109.47069 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47167 * 179.97438 * 17 16 15 19 19 C 1.46496 * 119.99680 * 90.00317 * 18 17 16 20 20 C 1.36934 * 120.00248 * 269.99806 * 18 17 16 21 21 H 1.08005 * 119.99800 * 30.66865 * 20 18 17 22 22 C 1.38808 * 120.00478 * 210.66711 * 20 18 17 23 23 N 1.31622 * 119.99727 * 6.90295 * 22 20 18 24 24 Si 1.86803 * 120.00344 * 186.90391 * 22 20 18 25 25 H 1.48497 * 109.47148 * 89.99465 * 24 22 20 26 26 H 1.48493 * 109.47085 * 210.00101 * 24 22 20 27 27 H 1.48502 * 109.46850 * 329.99601 * 24 22 20 28 28 C 1.38596 * 119.99689 * 324.53718 * 6 5 3 29 29 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46886 * 299.99668 * 1 2 3 31 31 H 1.08999 * 109.47390 * 60.00093 * 1 2 3 32 32 H 1.09003 * 109.46886 * 240.00331 * 2 1 3 33 33 H 1.08999 * 109.47390 * 119.99906 * 2 1 3 34 34 H 0.97004 * 120.00434 * 4.21635 * 5 3 2 35 35 H 1.07994 * 119.88672 * 359.97438 * 7 6 5 36 36 H 1.07990 * 119.89044 * 179.97438 * 8 7 6 37 37 H 1.07996 * 120.00163 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.47684 * 91.24415 * 14 13 11 39 39 H 1.09007 * 109.47308 * 211.24368 * 14 13 11 40 40 H 1.09007 * 109.47433 * 331.24188 * 14 13 11 41 41 H 1.09003 * 109.47697 * 210.00316 * 15 13 11 42 42 H 1.09000 * 109.47352 * 330.00892 * 15 13 11 43 43 H 1.09001 * 109.47282 * 299.99948 * 16 15 13 44 44 H 1.08997 * 109.47074 * 60.00592 * 16 15 13 45 45 H 1.08996 * 109.47521 * 300.00329 * 17 16 15 46 46 H 1.09004 * 109.47338 * 59.99816 * 17 16 15 47 47 H 1.09005 * 109.47321 * 94.48423 * 19 18 17 48 48 H 1.09004 * 109.46891 * 214.48557 * 19 18 17 49 49 H 1.08996 * 109.47263 * 334.48041 * 19 18 17 50 50 H 0.96998 * 120.00108 * 180.02562 * 23 22 20 51 51 H 1.08001 * 120.11466 * 359.72014 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8245 2.9834 0.0887 7 6 4.9900 3.2610 0.7932 8 6 5.4552 4.5593 0.8846 9 6 4.7658 5.5887 0.2765 10 6 3.5939 5.3206 -0.4327 11 6 2.8530 6.4216 -1.0848 12 8 2.3944 6.2687 -2.2000 13 7 2.6860 7.5946 -0.4424 14 6 3.3237 7.8148 0.8580 15 6 1.8670 8.6494 -1.0446 16 6 0.4143 8.4879 -0.5922 17 6 -0.4413 9.5892 -1.2215 18 7 -1.8324 9.4342 -0.7889 19 6 -2.3003 10.1047 0.4267 20 6 -2.6952 8.6628 -1.5207 21 1 -2.3232 7.8131 -2.0740 22 6 -4.0478 8.9728 -1.5515 23 7 -4.4817 10.0821 -0.9914 24 14 -5.2525 7.8158 -2.3880 25 1 -5.7555 6.8269 -1.4010 26 1 -6.3926 8.5967 -2.9315 27 1 -4.5668 7.1041 -3.4964 28 6 3.1247 4.0101 -0.5253 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.9873 0.9321 -0.0627 35 1 5.5335 2.4596 1.2715 36 1 6.3611 4.7689 1.4338 37 1 5.1327 6.6018 0.3498 38 1 4.3046 8.2666 0.7099 39 1 2.7039 8.4808 1.4585 40 1 3.4370 6.8610 1.3734 41 1 2.2397 9.6239 -0.7287 42 1 1.9196 8.5749 -2.1307 43 1 0.0415 7.5136 -0.9080 44 1 0.3615 8.5625 0.4940 45 1 -0.0688 10.5638 -0.9061 46 1 -0.3885 9.5143 -2.3077 47 1 -2.7534 11.0604 0.1631 48 1 -3.0391 9.4777 0.9259 49 1 -1.4567 10.2747 1.0956 50 1 -5.4269 10.2986 -1.0125 51 1 2.2211 3.7959 -1.0768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724852777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:00 Heat of formation + Delta-G solvation = -43.023946 kcal Electronic energy + Delta-G solvation = -30403.592169 eV Core-core repulsion = 26302.879730 eV Total energy + Delta-G solvation = -4100.712438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.87164 -41.04795 -39.23218 -37.95942 -36.83536 -35.94711 -34.20784 -33.83859 -32.56632 -31.72608 -30.61679 -28.15499 -27.91487 -27.17681 -25.86348 -24.92397 -23.48983 -23.22752 -22.03285 -21.32656 -20.76352 -18.95242 -18.73024 -18.34080 -17.62003 -17.28221 -17.11974 -16.90603 -16.72876 -16.43888 -15.88765 -15.64915 -15.47418 -15.22443 -14.84369 -14.69010 -14.56168 -14.44221 -14.31042 -14.12535 -13.77831 -13.42425 -13.35865 -13.22775 -12.98373 -12.82572 -12.80939 -12.71888 -12.59770 -12.58733 -12.46055 -12.31012 -12.20589 -12.10067 -11.93405 -11.56835 -11.47175 -11.00089 -10.91527 -10.71493 -10.02124 -9.74364 -9.23453 -8.71171 -7.89117 -5.47039 -0.11056 0.25915 1.37394 1.38781 1.46961 1.49097 1.59757 1.93485 2.09336 2.43972 2.75657 3.22083 3.39936 3.65820 3.66804 3.92098 3.99484 4.02926 4.13143 4.17402 4.20505 4.26791 4.32331 4.41806 4.47120 4.49427 4.56207 4.65227 4.69648 4.71077 4.82234 4.86371 4.87084 4.89961 4.91543 4.98212 5.17729 5.18451 5.23245 5.25856 5.29269 5.35472 5.40425 5.43531 5.52948 5.57633 5.65804 5.92555 6.28751 6.31785 6.37201 7.02607 7.11493 7.12066 7.81956 8.26576 9.11608 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.002890 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.312221 B = 9685.686750 C =12274.536015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.495 3.505 4 O -0.574 6.574 5 N -0.660 5.660 6 C 0.125 3.875 7 C -0.108 4.108 8 C -0.094 4.094 9 C -0.100 4.100 10 C -0.131 4.131 11 C 0.544 3.456 12 O -0.590 6.590 13 N -0.606 5.606 14 C 0.063 3.937 15 C 0.124 3.876 16 C -0.131 4.131 17 C 0.155 3.845 18 N -0.622 5.622 19 C 0.174 3.826 20 C -0.273 4.273 21 H 0.048 0.952 22 C -0.042 4.042 23 N -0.931 5.931 24 Si 0.965 3.035 25 H -0.284 1.284 26 H -0.281 1.281 27 H -0.277 1.277 28 C -0.104 4.104 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.434 0.566 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.159 0.841 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.012 0.988 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.007 0.993 49 H 0.036 0.964 50 H 0.252 0.748 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.086 -18.854 9.947 36.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.285 3.715 4 O -0.452 6.452 5 N -0.308 5.308 6 C 0.031 3.969 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.119 4.119 10 C -0.135 4.135 11 C 0.334 3.666 12 O -0.472 6.472 13 N -0.336 5.336 14 C -0.078 4.078 15 C 0.001 3.999 16 C -0.172 4.172 17 C 0.028 3.972 18 N -0.345 5.345 19 C 0.030 3.970 20 C -0.403 4.403 21 H 0.066 0.934 22 C -0.238 4.238 23 N -0.577 5.577 24 Si 0.792 3.208 25 H -0.210 1.210 26 H -0.206 1.206 27 H -0.202 1.202 28 C -0.126 4.126 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.274 0.726 35 H 0.191 0.809 36 H 0.197 0.803 37 H 0.177 0.823 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.031 0.969 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.026 0.974 49 H 0.055 0.945 50 H 0.061 0.939 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 28.086 -18.235 9.411 34.784 hybrid contribution -1.538 -0.649 -0.907 1.900 sum 26.548 -18.884 8.505 33.671 Atomic orbital electron populations 1.21592 0.94412 1.02831 1.01402 1.21704 0.97356 0.90069 1.07627 1.22020 0.81715 0.93722 0.74016 1.90810 1.56650 1.48451 1.49329 1.43460 1.07910 1.06723 1.72733 1.17787 0.96148 0.84588 0.98369 1.21544 0.94876 0.99367 0.97016 1.21436 1.00557 0.90740 0.98479 1.21799 0.92533 1.02257 0.95280 1.19700 0.98779 0.92239 1.02747 1.19032 0.79289 0.83265 0.84998 1.90754 1.52299 1.82321 1.21776 1.47911 1.49578 1.14072 1.22085 1.22457 0.99137 1.03675 0.82512 1.21461 0.89018 0.90966 0.98444 1.22312 0.95222 0.99072 1.00589 1.20791 0.83525 0.96170 0.96703 1.44061 1.07057 1.57306 1.26096 1.20577 0.94758 0.95502 0.86185 1.19312 0.89901 1.05761 1.25351 0.93438 1.25914 0.99512 0.98042 1.00362 1.70155 1.14050 1.24624 1.48844 0.85315 0.78713 0.78252 0.78473 1.21033 1.20649 1.20184 1.21076 1.00197 0.92345 0.98960 0.88939 0.93944 0.94613 0.85572 0.84879 0.72559 0.80939 0.80266 0.82329 0.88591 0.89947 0.89879 0.86385 0.91925 0.96905 0.92183 0.91526 0.94872 0.96985 0.97412 0.94533 0.93889 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.20 71.98 0.66 -1.80 16 2 C -0.13 -1.42 6.42 29.85 0.19 -1.22 16 3 C 0.50 10.57 7.67 87.66 0.67 11.25 16 4 O -0.57 -20.19 13.46 -3.04 -0.04 -20.23 16 5 N -0.66 -9.93 5.33 -303.61 -1.62 -11.54 16 6 C 0.13 2.55 6.29 38.11 0.24 2.79 16 7 C -0.11 -1.21 9.96 22.44 0.22 -0.99 16 8 C -0.09 -0.94 10.02 22.21 0.22 -0.72 16 9 C -0.10 -1.65 7.49 22.54 0.17 -1.48 16 10 C -0.13 -3.72 5.14 -20.10 -0.10 -3.82 16 11 C 0.54 19.58 7.32 86.79 0.64 20.21 16 12 O -0.59 -27.59 16.50 -3.86 -0.06 -27.65 16 13 N -0.61 -17.74 2.87 -850.15 -2.44 -20.18 16 14 C 0.06 1.11 8.93 127.77 1.14 2.25 16 15 C 0.12 3.95 5.45 86.38 0.47 4.42 16 16 C -0.13 -5.33 5.86 30.60 0.18 -5.15 16 17 C 0.15 7.02 5.65 86.38 0.49 7.51 16 18 N -0.62 -34.87 2.90 -726.94 -2.11 -36.98 16 19 C 0.17 9.25 9.00 127.77 1.15 10.40 16 20 C -0.27 -17.02 9.59 84.03 0.81 -16.21 16 21 H 0.05 3.06 7.84 -2.91 -0.02 3.03 16 22 C -0.04 -2.60 5.22 84.86 0.44 -2.16 16 23 N -0.93 -58.56 10.88 21.65 0.24 -58.33 16 24 Si 0.97 49.60 29.56 68.60 2.03 51.63 16 25 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 28 C -0.10 -3.24 8.29 22.66 0.19 -3.05 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 31 H 0.03 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.43 2.03 8.82 -92.71 -0.82 1.21 16 35 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 36 H 0.18 0.24 8.06 -2.92 -0.02 0.21 16 37 H 0.16 1.76 5.77 -2.91 -0.02 1.74 16 38 H 0.10 0.98 7.28 -2.39 -0.02 0.96 16 39 H 0.08 1.34 8.08 -2.38 -0.02 1.32 16 40 H 0.08 1.40 5.50 -2.38 -0.01 1.38 16 41 H 0.12 2.75 8.07 -2.39 -0.02 2.74 16 42 H 0.06 2.28 7.36 -2.39 -0.02 2.26 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 46 H 0.03 1.58 8.04 -2.38 -0.02 1.56 16 47 H 0.01 0.68 7.24 -2.38 -0.02 0.66 16 48 H 0.01 0.41 7.65 -2.38 -0.02 0.39 16 49 H 0.04 1.60 8.04 -2.39 -0.02 1.59 16 50 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 51 H 0.09 3.89 6.27 -2.91 -0.02 3.87 16 Total: -1.00 -98.06 415.70 3.88 -94.18 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.11 Total: 6.88 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 7.78 Total: 22.22 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -5.94 Total: -127.03 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.10 Total: -47.89 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal Total: -98.06 3.88 -94.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724852777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.160 kcal (2) G-P(sol) polarization free energy of solvation -98.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds