Wall clock time and date at job start Wed Apr 1 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 O 1.42903 * 109.46700 * 119.99603 * 2 1 3 5 5 C 1.35923 * 116.99626 * 157.02604 * 4 2 1 6 6 C 1.38857 * 120.40328 * 178.09877 * 5 4 2 7 7 N 1.31880 * 120.99526 * 179.97438 * 6 5 4 8 8 C 1.31675 * 121.94814 * 0.02562 * 7 6 5 9 9 C 1.39529 * 120.69051 * 359.97427 * 8 7 6 10 10 C 1.47855 * 120.53379 * 180.02562 * 9 8 7 11 11 O 1.21559 * 119.99700 * 161.22392 * 10 9 8 12 12 N 1.34764 * 120.00014 * 341.23076 * 10 9 8 13 13 C 1.47425 * 125.65145 * 185.41474 * 12 10 9 14 14 C 1.54901 * 104.83676 * 204.16406 * 13 12 10 15 15 C 1.55154 * 101.58142 * 322.98817 * 14 13 12 16 16 C 1.47028 * 125.65044 * 5.45798 * 12 10 9 17 17 H 1.08995 * 109.88021 * 59.48639 * 16 12 10 18 18 C 1.52998 * 110.01035 * 298.39363 * 16 12 10 19 19 N 1.46494 * 109.47207 * 181.36266 * 18 16 12 20 20 C 1.46495 * 120.00172 * 275.60069 * 19 18 16 21 21 C 1.36946 * 119.99965 * 95.60579 * 19 18 16 22 22 H 1.07993 * 119.99403 * 2.23494 * 21 19 18 23 23 C 1.38808 * 119.99627 * 182.23672 * 21 19 18 24 24 N 1.31619 * 120.00337 * 6.67105 * 23 21 19 25 25 Si 1.86805 * 119.99481 * 186.67359 * 23 21 19 26 26 H 1.48497 * 109.47244 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47260 * 120.00239 * 25 23 21 28 28 H 1.48500 * 109.46789 * 239.99955 * 25 23 21 29 29 C 1.38847 * 120.40830 * 358.32979 * 5 4 2 30 30 H 1.09005 * 109.47104 * 300.00601 * 1 2 3 31 31 H 1.09002 * 109.47022 * 60.00205 * 1 2 3 32 32 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47084 * 239.99824 * 2 1 3 34 34 H 1.08996 * 109.46958 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47010 * 299.99802 * 3 2 1 36 36 H 1.08998 * 109.47180 * 59.99222 * 3 2 1 37 37 H 1.07994 * 119.49927 * 359.95209 * 6 5 4 38 38 H 1.07994 * 119.65940 * 180.02562 * 8 7 6 39 39 H 1.09002 * 110.36720 * 323.00426 * 13 12 10 40 40 H 1.09006 * 110.36625 * 85.21095 * 13 12 10 41 41 H 1.09000 * 111.00582 * 204.91758 * 14 13 12 42 42 H 1.09000 * 111.00505 * 81.06399 * 14 13 12 43 43 H 1.08993 * 110.72158 * 277.13627 * 15 14 13 44 44 H 1.09005 * 110.72289 * 153.86400 * 15 14 13 45 45 H 1.09005 * 109.47077 * 301.36765 * 18 16 12 46 46 H 1.08999 * 109.47224 * 61.36020 * 18 16 12 47 47 H 1.09008 * 109.47376 * 354.91276 * 20 19 18 48 48 H 1.08997 * 109.47414 * 114.90964 * 20 19 18 49 49 H 1.09000 * 109.47741 * 234.91138 * 20 19 18 50 50 H 0.97002 * 119.99390 * 179.97438 * 24 23 21 51 51 H 1.08000 * 120.87537 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2632 -1.1880 1.1125 6 6 3.8115 -1.8221 2.2195 7 7 5.0296 -2.3259 2.1795 8 6 5.7787 -2.2528 1.0991 9 6 5.3032 -1.6320 -0.0565 10 6 6.1471 -1.5524 -1.2679 11 8 5.6383 -1.3323 -2.3497 12 7 7.4804 -1.7239 -1.1728 13 6 8.4485 -1.5604 -2.2726 14 6 9.6631 -2.4308 -1.8646 15 6 9.7042 -2.2083 -0.3296 16 6 8.2106 -2.1060 0.0449 17 1 7.8517 -3.0701 0.4050 18 6 8.0172 -1.0418 1.1269 19 7 8.7753 -1.4178 2.3227 20 6 8.1901 -2.3368 3.3021 21 6 10.0311 -0.9103 2.5251 22 1 10.4480 -0.2049 1.8217 23 6 10.7677 -1.3026 3.6342 24 7 10.3169 -2.2578 4.4195 25 14 12.3990 -0.4746 4.0123 26 1 12.6794 0.5594 2.9841 27 1 12.3315 0.1636 5.3514 28 1 13.4832 -1.4894 4.0018 29 6 4.0165 -1.0817 -0.0490 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.2317 -1.9037 3.1270 38 1 6.7712 -2.6784 1.1072 39 1 8.0223 -1.9191 -3.2095 40 1 8.7431 -0.5151 -2.3664 41 1 10.5776 -2.0709 -2.3361 42 1 9.4894 -3.4801 -2.1028 43 1 10.2267 -1.2828 -0.0879 44 1 10.1699 -3.0574 0.1708 45 1 8.3736 -0.0798 0.7583 46 1 6.9590 -0.9656 1.3767 47 1 7.1613 -2.5613 3.0203 48 1 8.7698 -3.2595 3.3262 49 1 8.2037 -1.8734 4.2886 50 1 10.8320 -2.5321 5.1943 51 1 3.6185 -0.5905 -0.9246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725041520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:16 Heat of formation + Delta-G solvation = 38.750680 kcal Electronic energy + Delta-G solvation = -32448.134638 eV Core-core repulsion = 28350.968214 eV Total energy + Delta-G solvation = -4097.166424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.25858 -39.90763 -38.33889 -37.61204 -35.34382 -33.60587 -32.66685 -31.82089 -31.39362 -29.91281 -28.85689 -27.58709 -26.02883 -25.65878 -24.74966 -23.87886 -22.45442 -21.60395 -20.98184 -20.46054 -19.50305 -18.19182 -17.28417 -16.98409 -16.70052 -16.23706 -15.90141 -15.65615 -15.11042 -14.67955 -14.60685 -14.55029 -14.15946 -13.67151 -13.59864 -13.30897 -13.14971 -13.08913 -12.88941 -12.62662 -12.58161 -12.50447 -12.45383 -12.12014 -11.82692 -11.62822 -11.31563 -11.14440 -10.98746 -10.91053 -10.84984 -10.73989 -10.44720 -10.39635 -10.13048 -10.05825 -9.94677 -9.76103 -9.65244 -9.32816 -8.66766 -8.45421 -8.21276 -6.93335 -5.64334 -3.09253 0.71779 1.28328 2.86624 2.94471 3.08202 3.36473 3.43228 3.45085 3.89261 4.30089 4.45852 4.48586 4.59978 4.63652 4.68215 4.76348 4.88163 4.93850 4.98156 5.02773 5.19134 5.24478 5.32443 5.36526 5.43135 5.47907 5.49971 5.52793 5.65218 5.67559 5.72128 5.75988 5.84338 5.89186 5.97313 5.99409 6.04775 6.12922 6.25822 6.40645 6.42101 6.50297 6.68126 6.76058 6.97476 7.15686 7.62377 7.70003 7.72136 7.97863 7.99806 8.21188 8.36463 9.24409 9.86052 10.28243 11.32958 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.003513 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.712279 B = 7968.497737 C = 9413.068486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 C -0.181 4.181 4 O -0.303 6.303 5 C 0.059 3.941 6 C 0.101 3.899 7 N -0.445 5.445 8 C 0.092 3.908 9 C -0.159 4.159 10 C 0.580 3.420 11 O -0.549 6.549 12 N -0.603 5.603 13 C 0.108 3.892 14 C -0.139 4.139 15 C -0.102 4.102 16 C 0.087 3.913 17 H 0.079 0.921 18 C 0.127 3.873 19 N -0.599 5.599 20 C 0.154 3.846 21 C -0.247 4.247 22 H 0.073 0.927 23 C -0.001 4.001 24 N -0.911 5.911 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.109 4.109 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.165 0.835 38 H 0.196 0.804 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.018 0.982 48 H 0.040 0.960 49 H 0.041 0.959 50 H 0.249 0.751 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 1.811 -10.699 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.238 4.238 4 O -0.217 6.217 5 C 0.012 3.988 6 C -0.058 4.058 7 N -0.153 5.153 8 C -0.064 4.064 9 C -0.164 4.164 10 C 0.369 3.631 11 O -0.429 6.429 12 N -0.335 5.335 13 C -0.014 4.014 14 C -0.177 4.177 15 C -0.140 4.140 16 C -0.018 4.018 17 H 0.096 0.904 18 C -0.003 4.003 19 N -0.322 5.322 20 C 0.010 3.990 21 C -0.376 4.376 22 H 0.091 0.909 23 C -0.198 4.198 24 N -0.558 5.558 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.136 4.136 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.182 0.818 38 H 0.212 0.788 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.715 1.472 -10.188 17.148 hybrid contribution 0.771 0.954 -0.616 1.373 sum -12.943 2.426 -10.804 17.034 Atomic orbital electron populations 1.21829 0.92182 1.03205 1.03100 1.22491 0.95585 0.92733 0.87563 1.22376 1.02368 0.95851 1.03229 1.86144 1.26808 1.69274 1.39438 1.19970 0.85956 0.97645 0.95260 1.22526 0.91913 0.94674 0.96680 1.67967 1.03915 1.16658 1.26809 1.24499 1.00643 0.94391 0.86881 1.20734 0.95489 1.04086 0.96063 1.17635 0.80684 0.76860 0.87934 1.90730 1.72860 1.50670 1.28637 1.48570 1.05076 1.67316 1.12568 1.22227 0.88798 1.00036 0.90356 1.22872 0.97321 0.99832 0.97680 1.22479 0.93979 1.04557 0.92957 1.23214 0.93024 1.00204 0.85354 0.90379 1.21724 0.96110 0.95309 0.87137 1.44031 1.15596 1.53655 1.18916 1.21248 0.92181 0.93573 0.91986 1.19303 0.91358 1.20113 1.06787 0.90871 1.24828 0.98569 0.98388 0.98010 1.70262 1.37953 1.30218 1.17367 0.86177 0.83639 0.78674 0.77992 1.20595 1.21770 1.21840 1.21703 0.93521 1.00430 0.97977 0.91358 0.90479 0.91591 0.90773 0.91835 0.90883 0.91249 0.81783 0.78812 0.90691 0.91374 0.90010 0.91055 0.89489 0.89654 0.92752 0.92677 0.96326 0.94149 0.93997 0.94009 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.56 37.16 0.36 -0.69 16 2 C 0.07 0.69 2.87 -26.73 -0.08 0.61 16 3 C -0.18 -1.62 9.24 37.16 0.34 -1.27 16 4 O -0.30 -3.66 9.82 -19.50 -0.19 -3.85 16 5 C 0.06 0.81 6.57 -39.13 -0.26 0.55 16 6 C 0.10 1.44 11.13 -17.30 -0.19 1.25 16 7 N -0.45 -7.41 9.19 -14.62 -0.13 -7.54 16 8 C 0.09 1.53 6.22 -17.14 -0.11 1.42 16 9 C -0.16 -2.56 5.28 -104.84 -0.55 -3.11 16 10 C 0.58 9.85 7.62 -12.33 -0.09 9.75 16 11 O -0.55 -10.30 16.80 5.31 0.09 -10.21 16 12 N -0.60 -9.51 3.07 -164.12 -0.50 -10.01 16 13 C 0.11 1.46 6.93 -2.53 -0.02 1.44 16 14 C -0.14 -1.71 7.08 -24.59 -0.17 -1.89 16 15 C -0.10 -1.60 5.66 -24.90 -0.14 -1.74 16 16 C 0.09 1.45 2.43 -66.95 -0.16 1.29 16 17 H 0.08 1.34 6.01 -51.93 -0.31 1.03 16 18 C 0.13 2.44 4.37 -4.05 -0.02 2.42 16 19 N -0.60 -13.85 2.75 -181.12 -0.50 -14.35 16 20 C 0.15 3.66 8.77 59.84 0.53 4.19 16 21 C -0.25 -6.24 8.57 -15.06 -0.13 -6.37 16 22 H 0.07 1.80 7.31 -52.49 -0.38 1.42 16 23 C 0.00 -0.03 5.42 -17.43 -0.09 -0.13 16 24 N -0.91 -25.33 9.50 55.49 0.53 -24.80 16 25 Si 0.90 21.14 29.56 -169.99 -5.02 16.12 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C -0.11 -1.58 7.91 -38.71 -0.31 -1.88 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.71 6.12 -51.93 -0.32 0.39 16 34 H 0.06 0.67 7.21 -51.93 -0.37 0.29 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.17 1.95 8.06 -52.49 -0.42 1.52 16 38 H 0.20 3.41 1.91 -52.49 -0.10 3.31 16 39 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.50 6.71 -51.93 -0.35 1.15 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.05 1.08 7.96 -51.93 -0.41 0.67 16 46 H 0.06 1.07 3.78 -56.03 -0.21 0.86 16 47 H 0.02 0.39 4.64 -51.92 -0.24 0.15 16 48 H 0.04 1.04 7.04 -51.93 -0.37 0.67 16 49 H 0.04 1.12 7.06 -51.93 -0.37 0.75 16 50 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 51 H 0.15 1.96 5.56 -52.49 -0.29 1.67 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -29.86 386.59 -8.51 -38.37 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.50 Total: 4.59 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.10 Total: 5.86 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.61 Total: -56.71 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.10 Total: -14.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.86 -8.51 -38.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725041520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.125 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds