Wall clock time and date at job start Wed Apr 1 2020 04:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 O 1.42903 * 109.46700 * 119.99603 * 2 1 3 5 5 C 1.35923 * 116.99626 * 157.02604 * 4 2 1 6 6 C 1.38857 * 120.40328 * 178.09877 * 5 4 2 7 7 N 1.31880 * 120.99526 * 179.97438 * 6 5 4 8 8 C 1.31675 * 121.94814 * 0.02562 * 7 6 5 9 9 C 1.39529 * 120.69051 * 359.97427 * 8 7 6 10 10 C 1.47855 * 120.53379 * 180.02562 * 9 8 7 11 11 O 1.21559 * 119.99700 * 161.22392 * 10 9 8 12 12 N 1.34764 * 120.00014 * 341.23076 * 10 9 8 13 13 C 1.47425 * 125.65145 * 185.41474 * 12 10 9 14 14 C 1.54901 * 104.83676 * 204.16406 * 13 12 10 15 15 C 1.55154 * 101.58142 * 322.98817 * 14 13 12 16 16 C 1.47028 * 125.65044 * 5.45798 * 12 10 9 17 17 H 1.08995 * 109.88021 * 59.48639 * 16 12 10 18 18 C 1.52998 * 110.01035 * 298.39363 * 16 12 10 19 19 N 1.46494 * 109.47207 * 181.36266 * 18 16 12 20 20 C 1.46495 * 120.00172 * 275.60069 * 19 18 16 21 21 C 1.36946 * 119.99965 * 95.60579 * 19 18 16 22 22 H 1.07993 * 119.99403 * 2.23494 * 21 19 18 23 23 C 1.38808 * 119.99627 * 182.23672 * 21 19 18 24 24 N 1.31619 * 120.00337 * 6.67105 * 23 21 19 25 25 Si 1.86805 * 119.99481 * 186.67359 * 23 21 19 26 26 H 1.48497 * 109.47244 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47260 * 120.00239 * 25 23 21 28 28 H 1.48500 * 109.46789 * 239.99955 * 25 23 21 29 29 C 1.38847 * 120.40830 * 358.32979 * 5 4 2 30 30 H 1.09005 * 109.47104 * 300.00601 * 1 2 3 31 31 H 1.09002 * 109.47022 * 60.00205 * 1 2 3 32 32 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47084 * 239.99824 * 2 1 3 34 34 H 1.08996 * 109.46958 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47010 * 299.99802 * 3 2 1 36 36 H 1.08998 * 109.47180 * 59.99222 * 3 2 1 37 37 H 1.07994 * 119.49927 * 359.95209 * 6 5 4 38 38 H 1.07994 * 119.65940 * 180.02562 * 8 7 6 39 39 H 1.09002 * 110.36720 * 323.00426 * 13 12 10 40 40 H 1.09006 * 110.36625 * 85.21095 * 13 12 10 41 41 H 1.09000 * 111.00582 * 204.91758 * 14 13 12 42 42 H 1.09000 * 111.00505 * 81.06399 * 14 13 12 43 43 H 1.08993 * 110.72158 * 277.13627 * 15 14 13 44 44 H 1.09005 * 110.72289 * 153.86400 * 15 14 13 45 45 H 1.09005 * 109.47077 * 301.36765 * 18 16 12 46 46 H 1.08999 * 109.47224 * 61.36020 * 18 16 12 47 47 H 1.09008 * 109.47376 * 354.91276 * 20 19 18 48 48 H 1.08997 * 109.47414 * 114.90964 * 20 19 18 49 49 H 1.09000 * 109.47741 * 234.91138 * 20 19 18 50 50 H 0.97002 * 119.99390 * 179.97438 * 24 23 21 51 51 H 1.08000 * 120.87537 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2632 -1.1880 1.1125 6 6 3.8115 -1.8221 2.2195 7 7 5.0296 -2.3259 2.1795 8 6 5.7787 -2.2528 1.0991 9 6 5.3032 -1.6320 -0.0565 10 6 6.1471 -1.5524 -1.2679 11 8 5.6383 -1.3323 -2.3497 12 7 7.4804 -1.7239 -1.1728 13 6 8.4485 -1.5604 -2.2726 14 6 9.6631 -2.4308 -1.8646 15 6 9.7042 -2.2083 -0.3296 16 6 8.2106 -2.1060 0.0449 17 1 7.8517 -3.0701 0.4050 18 6 8.0172 -1.0418 1.1269 19 7 8.7753 -1.4178 2.3227 20 6 8.1901 -2.3368 3.3021 21 6 10.0311 -0.9103 2.5251 22 1 10.4480 -0.2049 1.8217 23 6 10.7677 -1.3026 3.6342 24 7 10.3169 -2.2578 4.4195 25 14 12.3990 -0.4746 4.0123 26 1 12.6794 0.5594 2.9841 27 1 12.3315 0.1636 5.3514 28 1 13.4832 -1.4894 4.0018 29 6 4.0165 -1.0817 -0.0490 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.2317 -1.9037 3.1270 38 1 6.7712 -2.6784 1.1072 39 1 8.0223 -1.9191 -3.2095 40 1 8.7431 -0.5151 -2.3664 41 1 10.5776 -2.0709 -2.3361 42 1 9.4894 -3.4801 -2.1028 43 1 10.2267 -1.2828 -0.0879 44 1 10.1699 -3.0574 0.1708 45 1 8.3736 -0.0798 0.7583 46 1 6.9590 -0.9656 1.3767 47 1 7.1613 -2.5613 3.0203 48 1 8.7698 -3.2595 3.3262 49 1 8.2037 -1.8734 4.2886 50 1 10.8320 -2.5321 5.1943 51 1 3.6185 -0.5905 -0.9246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725041520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:15 Heat of formation + Delta-G solvation = 21.713545 kcal Electronic energy + Delta-G solvation = -32448.873424 eV Core-core repulsion = 28350.968214 eV Total energy + Delta-G solvation = -4097.905210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.49150 -41.05308 -39.44133 -39.02015 -37.05284 -34.51943 -33.90012 -33.38947 -32.70041 -31.25719 -30.27261 -28.24312 -27.95856 -27.07846 -26.02414 -25.14856 -23.79091 -22.88538 -22.12659 -21.77942 -20.76783 -19.37313 -18.79255 -18.38544 -18.04724 -17.38219 -17.22091 -16.73925 -16.61515 -16.19136 -15.84246 -15.59002 -15.37348 -15.20922 -14.83599 -14.67019 -14.51995 -14.45269 -13.91564 -13.84977 -13.69375 -13.56654 -13.41703 -13.18070 -13.05831 -12.93591 -12.75771 -12.70364 -12.42344 -12.19999 -12.06617 -12.04541 -11.84014 -11.82581 -11.75916 -11.60508 -11.49362 -11.35771 -10.92197 -10.61285 -10.57606 -9.86633 -9.41169 -8.83441 -7.65524 -5.11262 -0.49812 0.10113 1.49594 1.51901 1.59429 1.60549 1.78693 2.02107 2.55073 2.66966 3.07334 3.38223 3.42499 3.53287 3.63505 3.67298 3.75639 3.78116 3.84169 3.86748 3.94286 4.02858 4.10895 4.21806 4.32899 4.36459 4.46134 4.61826 4.64895 4.71388 4.74511 4.81239 4.83046 4.86705 4.87841 4.88647 5.02688 5.06220 5.07629 5.17787 5.18811 5.25294 5.27337 5.33616 5.46369 5.67397 5.69256 5.95684 6.15505 6.29212 6.37569 6.78435 6.90350 7.23492 7.93505 8.32416 9.30935 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.003513 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.712279 B = 7968.497737 C = 9413.068486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 C -0.179 4.179 4 O -0.305 6.305 5 C 0.073 3.927 6 C 0.097 3.903 7 N -0.467 5.467 8 C 0.079 3.921 9 C -0.168 4.168 10 C 0.579 3.421 11 O -0.568 6.568 12 N -0.601 5.601 13 C 0.103 3.897 14 C -0.121 4.121 15 C -0.102 4.102 16 C 0.101 3.899 17 H 0.076 0.924 18 C 0.131 3.869 19 N -0.609 5.609 20 C 0.177 3.823 21 C -0.239 4.239 22 H 0.081 0.919 23 C -0.057 4.057 24 N -0.941 5.941 25 Si 0.963 3.037 26 H -0.267 1.267 27 H -0.301 1.301 28 H -0.295 1.295 29 C -0.109 4.109 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.188 0.812 38 H 0.184 0.816 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.015 0.985 49 H 0.006 0.994 50 H 0.241 0.759 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 2.756 -12.577 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.007 3.993 3 C -0.236 4.236 4 O -0.218 6.218 5 C 0.025 3.975 6 C -0.062 4.062 7 N -0.176 5.176 8 C -0.076 4.076 9 C -0.173 4.173 10 C 0.368 3.632 11 O -0.450 6.450 12 N -0.332 5.332 13 C -0.018 4.018 14 C -0.159 4.159 15 C -0.140 4.140 16 C -0.005 4.005 17 H 0.093 0.907 18 C 0.003 3.997 19 N -0.333 5.333 20 C 0.033 3.967 21 C -0.369 4.369 22 H 0.098 0.902 23 C -0.250 4.250 24 N -0.591 5.591 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.228 1.228 28 H -0.222 1.222 29 C -0.136 4.136 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.205 0.795 38 H 0.199 0.801 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.033 0.967 49 H 0.025 0.975 50 H 0.051 0.949 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.759 2.438 -12.121 19.253 hybrid contribution 0.899 0.727 -0.090 1.159 sum -13.860 3.165 -12.211 18.741 Atomic orbital electron populations 1.21856 0.90062 1.03640 1.04330 1.22821 0.97193 0.92717 0.86547 1.22378 1.01112 0.95701 1.04442 1.86165 1.25655 1.69082 1.40919 1.19929 0.86429 0.96569 0.94577 1.22890 0.91360 0.94088 0.97820 1.67909 1.05064 1.17565 1.27050 1.24257 1.00530 0.95388 0.87431 1.20725 0.96190 1.04767 0.95582 1.17759 0.81003 0.76514 0.87878 1.90712 1.73186 1.51801 1.29267 1.48566 1.05109 1.66766 1.12798 1.22442 0.88608 1.00898 0.89885 1.22834 0.97947 1.00472 0.94667 1.22383 0.92684 1.03205 0.95696 1.22820 0.93901 0.98754 0.85019 0.90699 1.21766 0.95738 0.95664 0.86529 1.44109 1.15345 1.53556 1.20253 1.20847 0.93066 0.92159 0.90642 1.19599 0.91825 1.19230 1.06252 0.90160 1.25509 1.01635 0.99424 0.98481 1.70455 1.39027 1.31820 1.17775 0.85242 0.80259 0.77836 0.77359 1.19104 1.22831 1.22204 1.21835 0.92967 1.00110 0.98677 0.91087 0.88297 0.91576 0.90784 0.93715 0.88762 0.91025 0.79493 0.80055 0.89837 0.90579 0.87437 0.89959 0.90930 0.91029 0.93302 0.92359 0.93906 0.96659 0.97540 0.94876 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.56 71.98 0.69 -0.96 16 2 C 0.06 1.06 2.87 30.60 0.09 1.15 16 3 C -0.18 -2.85 9.24 71.98 0.66 -2.18 16 4 O -0.31 -6.81 9.82 -92.68 -0.91 -7.72 16 5 C 0.07 1.90 6.57 22.56 0.15 2.05 16 6 C 0.10 2.69 11.13 84.83 0.94 3.63 16 7 N -0.47 -15.47 9.19 -200.15 -1.84 -17.31 16 8 C 0.08 2.65 6.22 85.03 0.53 3.18 16 9 C -0.17 -5.32 5.28 -20.01 -0.11 -5.42 16 10 C 0.58 19.17 7.62 86.79 0.66 19.83 16 11 O -0.57 -20.65 16.80 -3.90 -0.07 -20.71 16 12 N -0.60 -18.31 3.07 -791.43 -2.43 -20.74 16 13 C 0.10 2.56 6.93 86.85 0.60 3.16 16 14 C -0.12 -2.70 7.08 31.98 0.23 -2.47 16 15 C -0.10 -3.12 5.66 31.78 0.18 -2.94 16 16 C 0.10 3.31 2.43 45.34 0.11 3.42 16 17 H 0.08 2.58 6.01 -2.39 -0.01 2.57 16 18 C 0.13 5.06 4.37 86.38 0.38 5.43 16 19 N -0.61 -28.64 2.75 -726.96 -2.00 -30.64 16 20 C 0.18 8.72 8.77 127.77 1.12 9.85 16 21 C -0.24 -12.20 8.57 84.03 0.72 -11.48 16 22 H 0.08 3.92 7.31 -2.91 -0.02 3.90 16 23 C -0.06 -3.07 5.42 84.86 0.46 -2.61 16 24 N -0.94 -54.02 9.50 21.65 0.21 -53.82 16 25 Si 0.96 43.95 29.56 68.60 2.03 45.98 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 29 C -0.11 -3.04 7.91 22.83 0.18 -2.86 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 1.27 6.12 -2.39 -0.01 1.26 16 34 H 0.04 0.88 7.21 -2.39 -0.02 0.86 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.18 6.46 1.91 -2.91 -0.01 6.46 16 39 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 40 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 2.44 6.71 -2.39 -0.02 2.43 16 44 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 45 H 0.05 1.93 7.96 -2.38 -0.02 1.91 16 46 H 0.06 2.27 3.78 -6.23 -0.02 2.25 16 47 H 0.04 1.86 4.64 -2.38 -0.01 1.85 16 48 H 0.01 0.81 7.04 -2.39 -0.02 0.79 16 49 H 0.01 0.34 7.06 -2.39 -0.02 0.32 16 50 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 51 H 0.16 3.99 5.56 -2.91 -0.02 3.98 16 Total: -1.00 -64.93 386.59 3.53 -61.40 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.94 Total: 22.78 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 7.60 Total: 20.79 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.06 Total: -122.51 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.98 Total: -28.43 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -64.93 3.53 -61.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725041520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.113 kcal (2) G-P(sol) polarization free energy of solvation -64.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds