Wall clock time and date at job start Wed Apr 1 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46814 * 2 1 4 4 O 1.42898 * 109.47168 * 120.00355 * 2 1 3 5 5 C 1.35679 * 117.00082 * 90.00063 * 4 2 1 6 6 C 1.38895 * 119.62359 * 180.02562 * 5 4 2 7 7 C 1.39566 * 118.94672 * 180.02562 * 6 5 4 8 8 C 1.48170 * 120.88995 * 179.97438 * 7 6 5 9 9 O 1.21512 * 120.00005 * 7.63466 * 8 7 6 10 10 N 1.34775 * 119.99820 * 187.62998 * 8 7 6 11 11 C 1.47019 * 125.65140 * 355.19478 * 10 8 7 12 12 C 1.54322 * 107.27276 * 178.90276 * 11 10 8 13 13 C 1.55158 * 102.94232 * 337.80865 * 12 11 10 14 14 H 1.09000 * 111.03069 * 277.41336 * 13 12 11 15 15 C 1.52992 * 111.00339 * 153.57894 * 13 12 11 16 16 N 1.46509 * 109.47047 * 181.35072 * 15 13 12 17 17 C 1.46491 * 120.00090 * 89.99584 * 16 15 13 18 18 C 1.36940 * 119.99411 * 269.99828 * 16 15 13 19 19 H 1.08000 * 120.00188 * 334.86062 * 18 16 15 20 20 C 1.38809 * 119.99531 * 154.86582 * 18 16 15 21 21 N 1.31624 * 120.00329 * 4.60250 * 20 18 16 22 22 Si 1.86805 * 119.99882 * 184.60091 * 20 18 16 23 23 H 1.48501 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46665 * 119.99823 * 22 20 18 25 25 H 1.48500 * 109.47399 * 240.00036 * 22 20 18 26 26 C 1.47425 * 125.64780 * 175.15380 * 10 8 7 27 27 C 1.39970 * 118.21946 * 0.26668 * 7 6 5 28 28 C 1.37978 * 119.12868 * 359.48146 * 27 7 6 29 29 N 1.31907 * 120.97955 * 0.53805 * 28 27 7 30 30 H 1.08995 * 109.47309 * 299.99386 * 1 2 3 31 31 H 1.09002 * 109.47342 * 59.99732 * 1 2 3 32 32 H 1.09002 * 109.46862 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46757 * 240.00362 * 2 1 3 34 34 H 1.08995 * 109.47471 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47642 * 300.00164 * 3 2 1 36 36 H 1.09012 * 109.46909 * 60.00424 * 3 2 1 37 37 H 1.08004 * 120.52679 * 0.02562 * 6 5 4 38 38 H 1.09005 * 109.88622 * 298.32009 * 11 10 8 39 39 H 1.09000 * 109.88323 * 59.33153 * 11 10 8 40 40 H 1.09004 * 110.71933 * 219.44424 * 12 11 10 41 41 H 1.08995 * 110.72162 * 96.16995 * 12 11 10 42 42 H 1.08999 * 109.48007 * 61.34722 * 15 13 12 43 43 H 1.09007 * 109.47548 * 301.34510 * 15 13 12 44 44 H 1.09000 * 109.47208 * 264.80136 * 17 16 15 45 45 H 1.09000 * 109.47388 * 144.80253 * 17 16 15 46 46 H 1.09005 * 109.47231 * 24.80522 * 17 16 15 47 47 H 0.96995 * 119.99948 * 180.02562 * 21 20 18 48 48 H 1.08993 * 110.36908 * 85.32384 * 26 10 8 49 49 H 1.09006 * 110.45616 * 323.04601 * 26 10 8 50 50 H 1.08000 * 120.43391 * 179.71022 * 27 7 6 51 51 H 1.08005 * 119.50948 * 180.25156 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2117 -2.0110 1.0651 6 6 2.6737 -2.7203 2.1663 7 6 2.8806 -4.0953 2.0460 8 6 3.3729 -4.8938 3.1929 9 8 3.4702 -4.3834 4.2913 10 7 3.7128 -6.1861 3.0178 11 6 3.5515 -6.9537 1.7742 12 6 4.1002 -8.3720 2.0367 13 6 5.0574 -8.1573 3.2388 14 1 6.0309 -7.7987 2.9044 15 6 5.2014 -9.4395 4.0610 16 7 6.0848 -9.1907 5.2030 17 6 5.5247 -8.7289 6.4754 18 6 7.4341 -9.3899 5.0808 19 1 7.8132 -10.0826 4.3440 20 6 8.3145 -8.7016 5.9041 21 7 7.8509 -7.9268 6.8619 22 14 10.1575 -8.8748 5.6529 23 1 10.4178 -9.7969 4.5183 24 1 10.7433 -7.5436 5.3528 25 1 10.7763 -9.4211 6.8873 26 6 4.3086 -7.0641 4.0412 27 6 2.6164 -4.6987 0.8109 28 6 2.1545 -3.9213 -0.2313 29 7 1.9706 -2.6238 -0.0809 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 2.8698 -2.2158 3.1010 38 1 2.4963 -7.0081 1.5063 39 1 4.1139 -6.4791 0.9701 40 1 4.6473 -8.7405 1.1690 41 1 3.2932 -9.0544 2.3035 42 1 5.6267 -10.2255 3.4371 43 1 4.2212 -9.7521 4.4213 44 1 5.5873 -7.6419 6.5267 45 1 6.0886 -9.1646 7.3001 46 1 4.4814 -9.0366 6.5461 47 1 8.4662 -7.4456 7.4369 48 1 3.5290 -7.5125 4.6569 49 1 5.0074 -6.5046 4.6632 50 1 2.7685 -5.7595 0.6767 51 1 1.9447 -4.3813 -1.1857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732077587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:44 Heat of formation + Delta-G solvation = 12.349585 kcal Electronic energy + Delta-G solvation = -30631.540237 eV Core-core repulsion = 26533.228975 eV Total energy + Delta-G solvation = -4098.311262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15669 -39.92431 -38.32389 -37.53034 -35.43484 -33.63661 -33.10820 -32.06239 -30.65845 -30.49092 -28.74317 -27.60567 -26.56704 -25.72804 -24.74893 -23.69301 -22.96541 -21.62755 -21.15797 -20.03320 -19.74490 -18.50470 -17.38024 -16.69483 -16.38612 -16.20732 -15.90350 -15.62958 -15.45833 -14.82099 -14.67580 -14.50113 -14.28761 -14.03674 -13.70795 -13.55107 -13.41030 -13.08207 -12.82137 -12.69541 -12.64903 -12.49886 -12.38711 -12.24726 -12.19186 -11.51877 -11.45290 -11.26666 -11.11411 -10.95308 -10.76890 -10.71768 -10.47921 -10.28310 -10.19721 -10.07732 -10.04582 -9.92308 -9.79080 -9.65121 -8.76884 -8.51635 -8.49402 -6.74369 -5.72413 -3.19351 0.54697 0.91646 2.59571 2.85497 3.09567 3.37741 3.44530 3.46576 3.64676 3.98016 4.25281 4.48557 4.52812 4.61480 4.64027 4.69113 4.80120 4.82685 4.93842 4.97659 5.08336 5.19844 5.31575 5.37542 5.39276 5.41249 5.46543 5.49812 5.51978 5.55573 5.70906 5.77537 5.83629 5.86483 5.94121 5.95520 6.04854 6.08089 6.19831 6.28958 6.46298 6.55928 6.67062 6.83278 6.92618 7.01622 7.51689 7.54268 7.56838 7.78255 7.89216 8.15498 8.43296 9.26610 9.87770 10.37162 11.32009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002184 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.233199 B =12815.614499 C =13455.684395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 C -0.152 4.152 4 O -0.300 6.300 5 C 0.320 3.680 6 C -0.136 4.136 7 C -0.042 4.042 8 C 0.566 3.434 9 O -0.524 6.524 10 N -0.606 5.606 11 C 0.089 3.911 12 C -0.132 4.132 13 C -0.117 4.117 14 H 0.085 0.915 15 C 0.164 3.836 16 N -0.605 5.605 17 C 0.165 3.835 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.906 5.906 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.121 3.879 27 C -0.217 4.217 28 C 0.135 3.865 29 N -0.531 5.531 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.039 0.961 44 H 0.026 0.974 45 H 0.054 0.946 46 H -0.010 1.010 47 H 0.252 0.748 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.172 0.828 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.421 9.658 -17.945 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 C -0.209 4.209 4 O -0.207 6.207 5 C 0.142 3.858 6 C -0.157 4.157 7 C -0.053 4.053 8 C 0.354 3.646 9 O -0.401 6.401 10 N -0.339 5.339 11 C -0.033 4.033 12 C -0.171 4.171 13 C -0.139 4.139 14 H 0.104 0.896 15 C 0.036 3.964 16 N -0.327 5.327 17 C 0.020 3.980 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.551 5.551 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.001 3.999 27 C -0.237 4.237 28 C -0.020 4.020 29 N -0.255 5.255 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.171 0.829 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.008 0.992 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.189 0.811 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.550 10.780 -17.622 25.856 hybrid contribution 1.271 -0.319 0.304 1.345 sum -14.279 10.461 -17.318 24.764 Atomic orbital electron populations 1.22219 0.94877 1.02884 1.02604 1.22357 0.94392 0.92825 0.87936 1.21914 1.02119 0.93835 1.03000 1.86325 1.80093 1.15650 1.38645 1.19589 0.92029 0.84842 0.89384 1.21141 1.02240 0.92845 0.99516 1.20139 0.97549 0.93316 0.94280 1.17732 0.78605 0.80596 0.87687 1.90819 1.53547 1.70184 1.25512 1.48496 1.61256 1.09660 1.14491 1.22540 1.00226 0.93142 0.87419 1.22788 0.99852 0.94465 1.00006 1.23250 0.97760 0.98633 0.94281 0.89645 1.20768 0.93690 0.92748 0.89203 1.43955 1.03526 1.78773 1.06472 1.20929 0.91181 0.98046 0.87815 1.19217 0.81677 1.18882 1.18762 0.91337 1.25166 0.98120 0.97415 0.98559 1.70095 1.32781 1.32303 1.19889 0.86235 0.85847 0.77281 0.77527 1.20367 1.21640 1.21750 1.22397 0.96539 0.90788 0.90212 1.23497 1.02659 1.04442 0.93068 1.22399 0.93345 0.87465 0.98837 1.67096 1.20829 1.13084 1.24483 0.91930 0.91105 0.92006 0.89237 0.91738 0.90478 0.91552 0.82932 0.90822 0.90613 0.90065 0.90564 0.93198 0.94233 0.95574 0.92776 0.99193 0.93730 0.91684 0.89399 0.81094 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.53 37.16 0.35 -0.96 16 2 C 0.08 0.73 3.11 -26.73 -0.08 0.65 16 3 C -0.15 -1.06 9.56 37.16 0.36 -0.70 16 4 O -0.30 -3.60 9.76 -18.74 -0.18 -3.78 16 5 C 0.32 4.05 7.45 -17.16 -0.13 3.92 16 6 C -0.14 -1.87 9.61 -38.84 -0.37 -2.25 16 7 C -0.04 -0.57 5.90 -104.67 -0.62 -1.19 16 8 C 0.57 9.53 7.83 -12.18 -0.10 9.43 16 9 O -0.52 -10.91 16.76 5.36 0.09 -10.82 16 10 N -0.61 -9.31 3.33 -171.78 -0.57 -9.88 16 11 C 0.09 0.96 4.89 -3.07 -0.01 0.94 16 12 C -0.13 -1.49 6.42 -24.90 -0.16 -1.65 16 13 C -0.12 -1.93 3.29 -88.48 -0.29 -2.22 16 14 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 15 C 0.16 3.06 5.22 -4.04 -0.02 3.04 16 16 N -0.60 -14.57 2.85 -181.12 -0.52 -15.09 16 17 C 0.16 4.04 8.15 59.84 0.49 4.53 16 18 C -0.26 -6.82 9.67 -15.06 -0.15 -6.96 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C 0.01 0.16 5.39 -17.43 -0.09 0.06 16 21 N -0.91 -26.31 10.10 55.49 0.56 -25.75 16 22 Si 0.90 21.71 29.56 -169.99 -5.02 16.69 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.12 2.18 5.35 -2.53 -0.01 2.16 16 27 C -0.22 -2.21 8.67 -39.03 -0.34 -2.55 16 28 C 0.13 1.25 11.17 -17.61 -0.20 1.05 16 29 N -0.53 -5.98 8.61 -13.38 -0.12 -6.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.83 6.98 -51.93 -0.36 0.47 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.15 2.18 7.76 -52.48 -0.41 1.78 16 38 H 0.07 0.62 6.82 -51.93 -0.35 0.26 16 39 H 0.08 0.71 6.67 -51.93 -0.35 0.36 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 42 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 43 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16 44 H 0.03 0.70 6.90 -51.93 -0.36 0.34 16 45 H 0.05 1.46 6.98 -51.93 -0.36 1.10 16 46 H -0.01 -0.23 7.83 -51.93 -0.41 -0.63 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.06 1.16 8.00 -51.93 -0.42 0.75 16 49 H 0.09 1.96 7.58 -51.93 -0.39 1.56 16 50 H 0.17 1.36 2.95 -52.84 -0.16 1.21 16 51 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 405.19 15.07 6.11 6.11 Total: -1.00 -32.82 405.19 -9.18 -42.00 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -8.15 Total: -0.70 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.38 Total: 7.32 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.64 Total: -56.81 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.09 Total: -14.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.82 -9.18 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732077587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.350 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds