Wall clock time and date at job start Wed Apr 1 2020 05:27:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09001 * 109.47174 * 2 1
4 4 C 1.53000 * 109.47154 * 240.00667 * 2 1 3
5 5 C 1.53006 * 109.46743 * 299.99914 * 4 2 1
6 6 C 1.52998 * 109.46867 * 299.99597 * 5 4 2
7 7 C 1.53000 * 109.47110 * 60.00628 * 6 5 4
8 8 C 1.52998 * 109.47633 * 120.00349 * 2 1 3
9 9 C 1.52999 * 109.46742 * 300.00279 * 8 2 1
10 10 N 1.46507 * 109.46946 * 185.52075 * 9 8 2
11 11 C 1.36933 * 120.00244 * 175.03487 * 10 9 8
12 12 H 1.08004 * 120.00032 * 0.02562 * 11 10 9
13 13 C 1.38805 * 120.00092 * 179.97438 * 11 10 9
14 14 N 1.31614 * 120.00280 * 0.02562 * 13 11 10
15 15 Si 1.86805 * 119.99869 * 180.02562 * 13 11 10
16 16 H 1.48498 * 109.47364 * 0.02562 * 15 13 11
17 17 H 1.48499 * 109.46903 * 120.00454 * 15 13 11
18 18 H 1.48500 * 109.47055 * 240.00222 * 15 13 11
19 19 N 1.46492 * 109.47457 * 179.97438 * 8 2 1
20 20 C 1.34780 * 119.99750 * 63.94705 * 19 8 2
21 21 O 1.21689 * 120.00320 * 354.66534 * 20 19 8
22 22 C 1.46726 * 120.00014 * 174.66795 * 20 19 8
23 23 C 1.36349 * 126.64263 * 0.03873 * 22 20 19
24 24 N 1.33688 * 107.45441 * 179.71015 * 23 22 20
25 25 C 1.30623 * 108.99331 * 0.42618 * 24 23 22
26 26 C 1.50698 * 125.42410 * 179.83022 * 25 24 23
27 27 C 1.53003 * 117.49829 * 351.07568 * 26 25 24
28 28 C 1.52998 * 60.00220 * 107.48603 * 27 26 25
29 29 O 1.33664 * 109.15239 * 359.56823 * 25 24 23
30 30 H 1.09000 * 109.47015 * 299.99409 * 1 2 3
31 31 H 1.09002 * 109.47608 * 59.99641 * 1 2 3
32 32 H 1.09001 * 109.47174 * 179.97438 * 1 2 3
33 33 H 1.08995 * 109.47472 * 179.97438 * 4 2 1
34 34 H 1.09002 * 109.47115 * 59.99389 * 4 2 1
35 35 H 1.09000 * 109.46875 * 179.97438 * 5 4 2
36 36 H 1.08995 * 109.47290 * 59.99700 * 5 4 2
37 37 H 1.08995 * 109.47250 * 300.00128 * 6 5 4
38 38 H 1.09001 * 109.47126 * 179.97438 * 6 5 4
39 39 H 1.08993 * 109.47243 * 180.02562 * 7 6 5
40 40 H 1.08998 * 109.47367 * 59.99116 * 7 6 5
41 41 H 1.08998 * 109.47502 * 305.51578 * 9 8 2
42 42 H 1.09001 * 109.47802 * 65.51903 * 9 8 2
43 43 H 0.96999 * 119.99503 * 355.03535 * 10 9 8
44 44 H 0.97007 * 120.00058 * 179.97438 * 14 13 11
45 45 H 0.96995 * 120.00299 * 243.94524 * 19 8 2
46 46 H 1.07996 * 126.26815 * 359.96811 * 23 22 20
47 47 H 1.08997 * 115.56315 * 205.38519 * 26 25 24
48 48 H 1.08998 * 117.49634 * 214.97825 * 27 26 25
49 49 H 1.09001 * 117.49958 * 359.97438 * 27 26 25
50 50 H 1.09001 * 117.50110 * 252.51152 * 28 27 26
51 51 H 1.09002 * 117.51844 * 107.47674 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7211 -1.2493
5 6 1.5299 -2.1636 -1.2494
6 6 2.0400 -2.8849 -0.0002
7 6 1.5300 -2.1638 1.2491
8 6 2.0401 -0.7213 1.2491
9 6 1.5300 -0.0001 2.4984
10 7 2.1240 -0.6098 3.6909
11 6 1.8933 -0.0647 4.9257
12 1 1.2731 0.8144 5.0206
13 6 2.4556 -0.6426 6.0555
14 7 3.2109 -1.7143 5.9400
15 14 2.1402 0.1006 7.7401
16 1 1.2648 1.2918 7.5996
17 1 1.4733 -0.9037 8.6072
18 1 3.4314 0.5040 8.3527
19 7 3.5050 -0.7218 1.2488
20 6 4.1793 0.4425 1.3289
21 8 3.5751 1.4985 1.3036
22 6 5.6418 0.4366 1.4465
23 6 6.4506 -0.6603 1.4866
24 7 7.7106 -0.2259 1.5915
25 6 7.7085 1.0798 1.6265
26 6 8.9316 1.9524 1.7441
27 6 10.2653 1.2632 2.0395
28 6 9.9915 1.8347 0.6469
29 8 6.4494 1.5190 1.5355
30 1 -0.3633 0.5137 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0277 -0.0005
33 1 3.1299 -0.7207 -1.2496
34 1 1.6765 -0.2072 -2.1393
35 1 1.8929 -2.6773 -2.1397
36 1 0.4399 -2.1637 -1.2493
37 1 3.1300 -2.8849 -0.0003
38 1 1.6763 -3.9125 0.0000
39 1 1.8938 -2.6774 2.1389
40 1 0.4400 -2.1638 1.2491
41 1 1.8103 1.0521 2.4505
42 1 0.4445 -0.0849 2.5493
43 1 2.6806 -1.3995 3.6056
44 1 3.6041 -2.1179 6.7296
45 1 3.9897 -1.5600 1.1910
46 1 6.1320 -1.6911 1.4379
47 1 8.7664 2.9373 2.1807
48 1 10.9775 1.7948 2.6705
49 1 10.2580 0.1788 2.1492
50 1 9.8041 1.1262 -0.1600
51 1 10.5233 2.7424 0.3614
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732258214.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:43
Heat of formation + Delta-G solvation = 22.449420 kcal
Electronic energy + Delta-G solvation = -32389.049125 eV
Core-core repulsion = 28291.175825 eV
Total energy + Delta-G solvation = -4097.873300 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-43.32924 -40.62796 -37.99068 -37.42235 -34.89701 -34.65223 -33.38055 -32.14481
-31.41439 -30.13821 -29.34409 -26.59802 -25.18480 -24.71376 -23.34810 -22.95395
-22.63620 -21.99800 -21.27520 -20.55590 -20.30709 -18.27013 -18.09649 -17.14720
-17.04159 -16.67773 -15.72721 -15.44314 -15.11465 -14.89671 -14.68689 -14.49652
-14.29114 -13.95308 -13.70324 -13.26300 -13.11494 -12.95064 -12.70876 -12.54405
-12.39513 -12.29908 -12.01035 -11.84352 -11.55149 -11.50620 -11.47131 -11.14420
-11.00531 -10.97447 -10.93825 -10.82392 -10.77516 -10.71726 -10.28469 -10.12493
-10.08309 -9.94443 -9.65003 -9.37689 -8.81645 -8.77194 -8.54926 -6.83633
-5.72754 -2.98891 0.95633 2.19200 2.41155 3.38864 3.45850 3.52232
3.54132 3.55339 3.57509 3.99040 4.46532 4.58949 4.62285 4.68346
4.77753 4.84769 4.87656 4.88277 4.97862 5.22892 5.28008 5.34209
5.41308 5.46763 5.48933 5.61771 5.63232 5.64782 5.68543 5.73062
5.76569 5.80496 5.83905 5.90085 5.97827 6.05800 6.14424 6.17649
6.18572 6.19557 6.26465 6.41174 6.46490 6.51362 6.58015 6.70247
6.88326 7.05122 7.56618 7.75609 7.77328 8.42765 8.46713 9.58444
10.15489 10.51088 11.50447
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.006913 B = 0.004691 C = 0.003134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4049.396867 B = 5968.061999 C = 8932.265750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.101 4.101
3 H 0.090 0.910
4 C -0.110 4.110
5 C -0.120 4.120
6 C -0.120 4.120
7 C -0.122 4.122
8 C 0.187 3.813
9 C 0.138 3.862
10 N -0.726 5.726
11 C -0.230 4.230
12 H 0.069 0.931
13 C -0.015 4.015
14 N -0.935 5.935
15 Si 0.903 3.097
16 H -0.281 1.281
17 H -0.292 1.292
18 H -0.293 1.293
19 N -0.691 5.691
20 C 0.611 3.389
21 O -0.514 6.514
22 C -0.081 4.081
23 C 0.021 3.979
24 N -0.483 5.483
25 C 0.235 3.765
26 C -0.084 4.084
27 C -0.144 4.144
28 C -0.154 4.154
29 O -0.165 6.165
30 H 0.062 0.938
31 H 0.051 0.949
32 H 0.059 0.941
33 H 0.058 0.942
34 H 0.058 0.942
35 H 0.056 0.944
36 H 0.065 0.935
37 H 0.057 0.943
38 H 0.063 0.937
39 H 0.081 0.919
40 H 0.083 0.917
41 H 0.047 0.953
42 H 0.027 0.973
43 H 0.381 0.619
44 H 0.252 0.748
45 H 0.397 0.603
46 H 0.191 0.809
47 H 0.136 0.864
48 H 0.108 0.892
49 H 0.112 0.888
50 H 0.102 0.898
51 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.022 0.449 -16.878 18.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.120 4.120
3 H 0.108 0.892
4 C -0.148 4.148
5 C -0.157 4.157
6 C -0.157 4.157
7 C -0.160 4.160
8 C 0.102 3.898
9 C 0.009 3.991
10 N -0.370 5.370
11 C -0.361 4.361
12 H 0.087 0.913
13 C -0.210 4.210
14 N -0.585 5.585
15 Si 0.735 3.265
16 H -0.206 1.206
17 H -0.219 1.219
18 H -0.220 1.220
19 N -0.343 5.343
20 C 0.395 3.605
21 O -0.390 6.390
22 C -0.138 4.138
23 C -0.122 4.122
24 N -0.212 5.212
25 C 0.030 3.970
26 C -0.103 4.103
27 C -0.181 4.181
28 C -0.192 4.192
29 O -0.049 6.049
30 H 0.081 0.919
31 H 0.070 0.930
32 H 0.078 0.922
33 H 0.076 0.924
34 H 0.076 0.924
35 H 0.074 0.926
36 H 0.084 0.916
37 H 0.076 0.924
38 H 0.082 0.918
39 H 0.099 0.901
40 H 0.101 0.899
41 H 0.065 0.935
42 H 0.044 0.956
43 H 0.215 0.785
44 H 0.062 0.938
45 H 0.232 0.768
46 H 0.208 0.792
47 H 0.154 0.846
48 H 0.126 0.874
49 H 0.131 0.869
50 H 0.120 0.880
51 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 7.021 1.046 -16.709 18.154
hybrid contribution -0.344 0.036 1.167 1.217
sum 6.676 1.082 -15.543 16.950
Atomic orbital electron populations
1.21961 0.94760 1.01966 1.01858 1.21470 0.96060 1.01067 0.93440
0.89165 1.21508 1.00450 0.95410 0.97396 1.21580 1.01043 0.95694
0.97423 1.21565 1.00437 0.99015 0.94729 1.21844 1.02026 0.93708
0.98424 1.20625 0.77225 0.96173 0.95799 1.21185 0.95672 0.97112
0.85083 1.42239 1.59972 1.33592 1.01178 1.19266 1.24502 1.08160
0.84162 0.91313 1.24663 1.00513 0.98186 0.97664 1.69647 1.37793
1.22770 1.28259 0.86157 0.77279 0.78227 0.84846 1.20601 1.21947
1.22040 1.45475 1.07220 1.07157 1.74437 1.16071 0.82357 0.84904
0.77171 1.90794 1.68553 1.30781 1.48852 1.22945 0.93646 0.84920
1.12247 1.23586 0.87615 1.00054 1.00981 1.70212 1.23080 1.08717
1.19218 1.25310 0.83932 0.89540 0.98203 1.20114 0.83400 0.98836
1.07921 1.23111 0.94515 1.02183 0.98325 1.23131 0.99474 1.03756
0.92822 1.84449 1.17162 1.35439 1.67870 0.91908 0.93009 0.92176
0.92368 0.92368 0.92561 0.91620 0.92389 0.91783 0.90063 0.89887
0.93467 0.95577 0.78493 0.93766 0.76778 0.79161 0.84634 0.87374
0.86921 0.87986 0.87373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.86 8.15 37.15 0.30 -1.55 16
2 C -0.10 -1.42 2.09 -90.62 -0.19 -1.61 16
3 H 0.09 1.51 6.28 -51.93 -0.33 1.18 16
4 C -0.11 -1.28 5.29 -26.73 -0.14 -1.42 16
5 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16
6 C -0.12 -1.30 5.75 -26.73 -0.15 -1.45 16
7 C -0.12 -1.70 4.40 -26.73 -0.12 -1.82 16
8 C 0.19 2.96 0.09 -131.82 -0.01 2.95 16
9 C 0.14 2.87 4.27 -4.04 -0.02 2.85 16
10 N -0.73 -18.23 5.19 -59.91 -0.31 -18.54 16
11 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16
12 H 0.07 1.97 7.83 -52.48 -0.41 1.55 16
13 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16
14 N -0.94 -28.26 13.06 55.49 0.72 -27.53 16
15 Si 0.90 23.12 29.55 -169.99 -5.02 18.09 16
16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16
17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
18 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16
19 N -0.69 -10.90 3.56 -48.89 -0.17 -11.07 16
20 C 0.61 11.38 7.20 -12.83 -0.09 11.28 16
21 O -0.51 -11.15 13.41 1.34 0.02 -11.13 16
22 C -0.08 -1.43 7.22 -36.84 -0.27 -1.70 16
23 C 0.02 0.32 11.37 -17.42 -0.20 0.12 16
24 N -0.48 -7.53 10.79 -10.81 -0.12 -7.64 16
25 C 0.23 3.56 7.86 -12.79 -0.10 3.46 16
26 C -0.08 -0.90 6.33 -91.77 -0.58 -1.48 16
27 C -0.14 -1.25 10.13 -26.73 -0.27 -1.52 16
28 C -0.15 -1.24 10.23 -26.73 -0.27 -1.51 16
29 O -0.17 -2.96 10.79 0.58 0.01 -2.96 16
30 H 0.06 0.87 6.56 -51.93 -0.34 0.53 16
31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16
33 H 0.06 0.71 7.60 -51.93 -0.39 0.31 16
34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16
37 H 0.06 0.59 6.78 -51.93 -0.35 0.24 16
38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.08 1.31 7.11 -51.93 -0.37 0.94 16
40 H 0.08 1.13 6.43 -51.93 -0.33 0.79 16
41 H 0.05 1.12 6.25 -51.93 -0.32 0.79 16
42 H 0.03 0.54 6.74 -51.93 -0.35 0.20 16
43 H 0.38 9.78 6.47 -40.82 -0.26 9.51 16
44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
45 H 0.40 5.31 6.12 -40.82 -0.25 5.06 16
46 H 0.19 2.30 7.45 -52.49 -0.39 1.91 16
47 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16
48 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16
49 H 0.11 1.12 7.87 -51.93 -0.41 0.71 16
50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
51 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 393.36 15.07 5.93 5.93
Total: -1.00 -34.65 393.36 -9.07 -43.73
By element:
Atomic # 1 Polarization: 20.75 SS G_CDS: -7.62 Total: 13.14 kcal
Atomic # 6 Polarization: 0.49 SS G_CDS: -2.51 Total: -2.02 kcal
Atomic # 7 Polarization: -64.90 SS G_CDS: 0.12 Total: -64.78 kcal
Atomic # 8 Polarization: -14.11 SS G_CDS: 0.02 Total: -14.09 kcal
Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -34.65 -9.07 -43.73 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732258214.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.176 kcal
(2) G-P(sol) polarization free energy of solvation -34.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.522 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds