Wall clock time and date at job start Wed Apr 1 2020 04:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47483 * 2 1 4 4 O 1.42907 * 109.47032 * 119.99667 * 2 1 3 5 5 C 1.35725 * 116.99706 * 85.24165 * 4 2 1 6 6 C 1.39230 * 120.38323 * 354.62669 * 5 4 2 7 7 C 1.38325 * 118.44515 * 180.02562 * 6 5 4 8 8 C 1.39461 * 119.13231 * 0.26212 * 7 6 5 9 9 C 1.47922 * 119.66079 * 179.72109 * 8 7 6 10 10 O 1.21554 * 119.99770 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00292 * 179.97438 * 9 8 7 12 12 C 1.47419 * 125.65028 * 359.69470 * 11 9 8 13 13 C 1.55132 * 104.72601 * 155.81364 * 12 11 9 14 14 C 1.55159 * 101.48168 * 37.29650 * 13 12 11 15 15 C 1.53001 * 110.87104 * 82.76752 * 14 13 12 16 16 C 1.52998 * 110.71807 * 205.96814 * 14 13 12 17 17 N 1.46504 * 109.47097 * 174.97651 * 16 14 13 18 18 C 1.36930 * 120.00215 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99940 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46898 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46723 * 120.00511 * 22 20 18 25 25 H 1.48506 * 109.47073 * 240.00466 * 22 20 18 26 26 C 1.47025 * 125.64666 * 180.02562 * 11 9 8 27 27 N 1.32808 * 120.68524 * 359.49099 * 8 7 6 28 28 C 1.31373 * 121.69087 * 0.49359 * 27 8 7 29 29 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 31 31 H 1.09004 * 109.47411 * 59.99803 * 1 2 3 32 32 H 1.09004 * 109.47107 * 239.99705 * 2 1 3 33 33 H 1.08991 * 109.47081 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.46564 * 300.00229 * 3 2 1 35 35 H 1.08996 * 109.47051 * 59.99533 * 3 2 1 36 36 H 1.08005 * 120.77646 * 0.04970 * 6 5 4 37 37 H 1.07998 * 120.43028 * 179.97438 * 7 6 5 38 38 H 1.08999 * 110.36661 * 274.74946 * 12 11 9 39 39 H 1.09007 * 110.36521 * 37.06621 * 12 11 9 40 40 H 1.09000 * 111.19308 * 279.19629 * 13 12 11 41 41 H 1.08994 * 110.90382 * 155.27473 * 13 12 11 42 42 H 1.08997 * 109.47063 * 304.93360 * 15 14 13 43 43 H 1.09000 * 109.47236 * 64.93551 * 15 14 13 44 44 H 1.09002 * 109.46893 * 184.93234 * 15 14 13 45 45 H 1.08998 * 109.47185 * 294.97527 * 16 14 13 46 46 H 1.08999 * 109.47314 * 54.98023 * 16 14 13 47 47 H 0.97004 * 119.99581 * 0.02562 * 17 16 14 48 48 H 0.96997 * 119.99865 * 179.97438 * 21 20 18 49 49 H 1.09006 * 109.88245 * 300.43892 * 26 11 9 50 50 H 1.08995 * 109.88600 * 61.60630 * 26 11 9 51 51 H 1.08001 * 119.59539 * 179.74802 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1171 -2.0245 1.0964 6 6 1.6713 -2.7098 -0.0306 7 6 1.8032 -4.0864 -0.0597 8 6 2.3695 -4.7375 1.0359 9 6 2.5105 -6.2099 1.0198 10 8 2.1342 -6.8459 0.0547 11 7 3.0573 -6.8461 2.0746 12 6 3.5603 -6.2008 3.3009 13 6 3.4869 -7.3062 4.3868 14 6 3.8871 -8.5654 3.5732 15 6 5.4086 -8.6811 3.4612 16 6 3.2951 -9.8276 4.2034 17 7 3.5877 -10.9825 3.3507 18 6 3.1545 -12.2294 3.7145 19 1 2.5974 -12.3617 4.6302 20 6 3.4314 -13.3236 2.9064 21 7 4.1107 -13.1625 1.7906 22 14 2.8397 -15.0246 3.4023 23 1 2.1040 -14.9371 4.6892 24 1 1.9371 -15.5604 2.3519 25 1 4.0075 -15.9285 3.5597 26 6 3.2570 -8.2981 2.1900 27 7 2.7876 -4.0488 2.0917 28 6 2.6772 -2.7411 2.1506 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.2330 -2.1788 -0.8629 37 1 1.4678 -4.6500 -0.9177 38 1 4.5897 -5.8708 3.1610 39 1 2.9249 -5.3583 3.5742 40 1 2.4762 -7.4024 4.7835 41 1 4.2023 -7.1140 5.1864 42 1 5.8128 -7.7614 3.0384 43 1 5.8345 -8.8437 4.4513 44 1 5.6624 -9.5208 2.8142 45 1 3.7350 -9.9826 5.1885 46 1 2.2156 -9.7128 4.3015 47 1 4.0891 -10.8638 2.5288 48 1 4.3045 -13.9271 1.2261 49 1 2.2984 -8.8114 2.1142 50 1 3.9281 -8.6437 1.4038 51 1 3.0249 -2.2154 3.0276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733444612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:58 Heat of formation + Delta-G solvation = -18.070519 kcal Electronic energy + Delta-G solvation = -30422.187548 eV Core-core repulsion = 26322.557171 eV Total energy + Delta-G solvation = -4099.630377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28917 -40.04827 -38.81861 -37.67392 -34.75931 -33.90662 -32.92477 -32.39301 -30.77900 -30.29238 -28.90279 -27.91689 -26.64524 -25.76582 -24.74717 -23.80656 -23.21351 -21.99861 -21.61783 -20.02534 -18.80941 -18.69152 -17.64299 -17.11650 -16.74245 -16.19586 -15.85997 -15.74637 -15.12943 -14.93268 -14.63667 -14.47537 -14.39065 -13.89514 -13.82980 -13.56079 -13.46580 -13.14124 -13.06228 -13.03246 -12.85326 -12.65023 -12.50730 -12.36274 -12.02853 -11.89372 -11.65933 -11.53838 -11.50149 -11.35078 -10.96346 -10.79968 -10.54910 -10.37334 -10.23920 -10.19002 -10.11669 -9.84273 -9.62691 -9.48558 -8.84940 -8.82389 -8.33928 -6.85459 -5.70300 -2.98712 0.45621 0.80598 2.50230 2.70262 3.07351 3.47901 3.53232 3.55671 3.65863 3.96015 4.07421 4.20722 4.25466 4.36263 4.47795 4.58159 4.64432 4.74203 4.85215 4.93481 4.94813 5.06569 5.10938 5.15706 5.18280 5.39274 5.46392 5.51940 5.53736 5.57013 5.60086 5.63239 5.66120 5.76492 5.86552 5.99533 6.09095 6.15399 6.20015 6.26862 6.27814 6.43490 6.50545 6.61030 6.70791 6.75626 6.81932 6.91643 7.41493 7.69801 7.76341 8.26222 8.48368 9.59743 10.17485 10.52199 11.52596 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.001919 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.455656 B =14586.969547 C =15132.046825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.300 6.300 5 C 0.102 3.898 6 C -0.177 4.177 7 C -0.067 4.067 8 C 0.046 3.954 9 C 0.580 3.420 10 O -0.537 6.537 11 N -0.595 5.595 12 C 0.104 3.896 13 C -0.127 4.127 14 C -0.078 4.078 15 C -0.131 4.131 16 C 0.169 3.831 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.120 3.880 27 N -0.413 5.413 28 C 0.071 3.929 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 32.670 -1.553 32.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 C -0.206 4.206 4 O -0.212 6.212 5 C 0.053 3.947 6 C -0.203 4.203 7 C -0.088 4.088 8 C -0.091 4.091 9 C 0.367 3.633 10 O -0.414 6.414 11 N -0.326 5.326 12 C -0.018 4.018 13 C -0.166 4.166 14 C -0.079 4.079 15 C -0.188 4.188 16 C 0.041 3.959 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.001 4.001 27 N -0.124 5.124 28 C -0.091 4.091 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.219 0.781 48 H 0.064 0.936 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.334 31.875 -1.207 32.072 hybrid contribution -0.606 -0.523 -0.997 1.279 sum -3.941 31.352 -2.204 31.676 Atomic orbital electron populations 1.22405 0.94624 1.03354 1.03582 1.22573 0.94659 0.93970 0.87089 1.21864 1.02297 0.93092 1.03350 1.86122 1.80421 1.15576 1.39092 1.20437 0.94954 0.83853 0.95410 1.21740 1.04600 0.94951 0.99057 1.21952 0.94427 0.93670 0.98748 1.21061 1.01734 0.94448 0.91878 1.17345 0.78528 0.85252 0.82208 1.90823 1.50516 1.66610 1.33488 1.48347 1.58429 1.08709 1.17153 1.22693 0.99885 0.96255 0.82986 1.22977 1.02355 0.94011 0.97216 1.21826 0.96395 0.95804 0.93841 1.21747 0.93336 1.01485 1.02258 1.20648 0.96366 0.85287 0.93618 1.42390 1.66899 1.02578 1.25684 1.19263 1.28251 0.84723 1.04686 0.91166 1.24733 1.01143 0.97931 0.97194 1.69670 1.44764 1.29694 1.13951 0.86129 0.77830 0.84819 0.77486 1.20611 1.21942 1.21950 1.22144 1.01770 0.78723 0.97494 1.67918 1.13465 1.07042 1.23999 1.22346 0.99706 0.88955 0.98060 0.91740 0.91116 0.90642 0.90628 0.91445 0.90273 0.91220 0.83596 0.83069 0.91602 0.88077 0.90597 0.89932 0.93489 0.92438 0.91276 0.95801 0.96178 0.78100 0.93597 0.90395 0.91010 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.78 9.19 37.15 0.34 -0.44 16 2 C 0.07 0.37 2.85 -26.73 -0.08 0.29 16 3 C -0.15 -0.53 9.56 37.16 0.36 -0.18 16 4 O -0.30 -2.26 9.80 -18.88 -0.19 -2.44 16 5 C 0.10 0.88 6.63 -38.84 -0.26 0.62 16 6 C -0.18 -1.49 8.34 -39.18 -0.33 -1.82 16 7 C -0.07 -0.74 9.62 -39.09 -0.38 -1.12 16 8 C 0.05 0.62 6.72 -83.02 -0.56 0.06 16 9 C 0.58 9.74 7.83 -12.30 -0.10 9.64 16 10 O -0.54 -10.75 16.64 5.32 0.09 -10.66 16 11 N -0.59 -9.57 3.32 -171.46 -0.57 -10.14 16 12 C 0.10 1.34 5.63 -2.41 -0.01 1.33 16 13 C -0.13 -1.65 6.04 -24.46 -0.15 -1.80 16 14 C -0.08 -1.28 0.61 -152.67 -0.09 -1.37 16 15 C -0.13 -2.08 8.25 37.16 0.31 -1.77 16 16 C 0.17 3.41 5.07 -4.04 -0.02 3.39 16 17 N -0.73 -18.60 5.15 -59.91 -0.31 -18.91 16 18 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 22 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 C 0.12 2.19 5.47 -3.06 -0.02 2.18 16 27 N -0.41 -4.79 6.57 -9.68 -0.06 -4.85 16 28 C 0.07 0.66 11.14 -17.38 -0.19 0.46 16 29 H 0.06 0.33 6.97 -51.93 -0.36 -0.03 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.33 6.32 -51.93 -0.33 0.00 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.15 0.85 5.59 -52.48 -0.29 0.55 16 37 H 0.15 1.63 7.63 -52.49 -0.40 1.22 16 38 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 39 H 0.10 1.21 5.87 -51.93 -0.30 0.91 16 40 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 41 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 42 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 47 H 0.38 10.30 6.37 -40.82 -0.26 10.04 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.08 1.61 7.82 -51.93 -0.41 1.21 16 50 H 0.07 1.42 7.84 -51.93 -0.41 1.01 16 51 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -34.09 405.93 -8.74 -42.83 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.10 Total: 6.15 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.42 Total: 2.06 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.22 Total: -61.90 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.10 Total: -13.11 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.09 -8.74 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733444612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.760 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds