Wall clock time and date at job start Wed Apr 1 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47483 * 2 1 4 4 O 1.42907 * 109.47032 * 119.99667 * 2 1 3 5 5 C 1.35725 * 116.99706 * 85.24165 * 4 2 1 6 6 C 1.39230 * 120.38323 * 354.62669 * 5 4 2 7 7 C 1.38325 * 118.44515 * 180.02562 * 6 5 4 8 8 C 1.39461 * 119.13231 * 0.26212 * 7 6 5 9 9 C 1.47922 * 119.66079 * 179.72109 * 8 7 6 10 10 O 1.21554 * 119.99770 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00292 * 179.97438 * 9 8 7 12 12 C 1.47419 * 125.65028 * 359.69470 * 11 9 8 13 13 C 1.55132 * 104.72601 * 155.81364 * 12 11 9 14 14 C 1.55159 * 101.48168 * 37.29650 * 13 12 11 15 15 C 1.53001 * 110.87104 * 82.76752 * 14 13 12 16 16 C 1.52998 * 110.71807 * 205.96814 * 14 13 12 17 17 N 1.46504 * 109.47097 * 174.97651 * 16 14 13 18 18 C 1.36930 * 120.00215 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99940 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46898 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46723 * 120.00511 * 22 20 18 25 25 H 1.48506 * 109.47073 * 240.00466 * 22 20 18 26 26 C 1.47025 * 125.64666 * 180.02562 * 11 9 8 27 27 N 1.32808 * 120.68524 * 359.49099 * 8 7 6 28 28 C 1.31373 * 121.69087 * 0.49359 * 27 8 7 29 29 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 31 31 H 1.09004 * 109.47411 * 59.99803 * 1 2 3 32 32 H 1.09004 * 109.47107 * 239.99705 * 2 1 3 33 33 H 1.08991 * 109.47081 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.46564 * 300.00229 * 3 2 1 35 35 H 1.08996 * 109.47051 * 59.99533 * 3 2 1 36 36 H 1.08005 * 120.77646 * 0.04970 * 6 5 4 37 37 H 1.07998 * 120.43028 * 179.97438 * 7 6 5 38 38 H 1.08999 * 110.36661 * 274.74946 * 12 11 9 39 39 H 1.09007 * 110.36521 * 37.06621 * 12 11 9 40 40 H 1.09000 * 111.19308 * 279.19629 * 13 12 11 41 41 H 1.08994 * 110.90382 * 155.27473 * 13 12 11 42 42 H 1.08997 * 109.47063 * 304.93360 * 15 14 13 43 43 H 1.09000 * 109.47236 * 64.93551 * 15 14 13 44 44 H 1.09002 * 109.46893 * 184.93234 * 15 14 13 45 45 H 1.08998 * 109.47185 * 294.97527 * 16 14 13 46 46 H 1.08999 * 109.47314 * 54.98023 * 16 14 13 47 47 H 0.97004 * 119.99581 * 0.02562 * 17 16 14 48 48 H 0.96997 * 119.99865 * 179.97438 * 21 20 18 49 49 H 1.09006 * 109.88245 * 300.43892 * 26 11 9 50 50 H 1.08995 * 109.88600 * 61.60630 * 26 11 9 51 51 H 1.08001 * 119.59539 * 179.74802 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1171 -2.0245 1.0964 6 6 1.6713 -2.7098 -0.0306 7 6 1.8032 -4.0864 -0.0597 8 6 2.3695 -4.7375 1.0359 9 6 2.5105 -6.2099 1.0198 10 8 2.1342 -6.8459 0.0547 11 7 3.0573 -6.8461 2.0746 12 6 3.5603 -6.2008 3.3009 13 6 3.4869 -7.3062 4.3868 14 6 3.8871 -8.5654 3.5732 15 6 5.4086 -8.6811 3.4612 16 6 3.2951 -9.8276 4.2034 17 7 3.5877 -10.9825 3.3507 18 6 3.1545 -12.2294 3.7145 19 1 2.5974 -12.3617 4.6302 20 6 3.4314 -13.3236 2.9064 21 7 4.1107 -13.1625 1.7906 22 14 2.8397 -15.0246 3.4023 23 1 2.1040 -14.9371 4.6892 24 1 1.9371 -15.5604 2.3519 25 1 4.0075 -15.9285 3.5597 26 6 3.2570 -8.2981 2.1900 27 7 2.7876 -4.0488 2.0917 28 6 2.6772 -2.7411 2.1506 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.2330 -2.1788 -0.8629 37 1 1.4678 -4.6500 -0.9177 38 1 4.5897 -5.8708 3.1610 39 1 2.9249 -5.3583 3.5742 40 1 2.4762 -7.4024 4.7835 41 1 4.2023 -7.1140 5.1864 42 1 5.8128 -7.7614 3.0384 43 1 5.8345 -8.8437 4.4513 44 1 5.6624 -9.5208 2.8142 45 1 3.7350 -9.9826 5.1885 46 1 2.2156 -9.7128 4.3015 47 1 4.0891 -10.8638 2.5288 48 1 4.3045 -13.9271 1.2261 49 1 2.2984 -8.8114 2.1142 50 1 3.9281 -8.6437 1.4038 51 1 3.0249 -2.2154 3.0276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733444612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:57 Heat of formation + Delta-G solvation = -39.831155 kcal Electronic energy + Delta-G solvation = -30423.131160 eV Core-core repulsion = 26322.557171 eV Total energy + Delta-G solvation = -4100.573989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.11682 -41.12862 -39.73404 -38.90579 -36.50343 -34.54438 -34.24967 -33.39243 -32.31954 -31.41786 -30.24613 -28.23802 -27.93458 -27.40820 -25.77805 -25.03306 -24.37562 -23.35478 -22.31123 -21.06680 -20.15434 -19.43835 -19.21559 -18.38565 -17.84720 -17.24556 -16.85992 -16.64612 -16.57674 -15.98475 -15.66688 -15.57587 -15.47971 -15.27047 -15.09292 -14.82292 -14.59255 -14.34024 -14.20565 -13.86123 -13.60884 -13.47713 -13.38172 -13.28302 -13.11428 -13.05276 -12.92292 -12.79062 -12.76730 -12.70365 -12.10451 -12.04075 -11.98572 -11.80149 -11.72682 -11.51191 -11.47248 -11.28012 -10.96894 -10.94869 -10.50515 -9.79937 -9.46363 -8.97866 -7.93792 -5.22291 -0.41820 0.07288 1.46347 1.47943 1.57850 1.60723 1.81336 2.00609 2.56344 2.72168 3.03062 3.38597 3.44501 3.48384 3.64269 3.69416 3.75334 3.82180 3.86713 3.94359 3.98425 4.13689 4.17574 4.33538 4.42132 4.42693 4.60272 4.66812 4.70076 4.73298 4.78000 4.79668 4.85829 4.86475 4.88513 4.90343 4.96411 5.00170 5.09155 5.12594 5.19905 5.23182 5.23948 5.28982 5.30876 5.42201 5.49417 5.52616 6.13118 6.28101 6.42560 6.61334 7.00960 7.34499 8.11035 8.33828 9.30136 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.001919 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.455656 B =14586.969547 C =15132.046825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 C -0.147 4.147 4 O -0.302 6.302 5 C 0.116 3.884 6 C -0.170 4.170 7 C -0.071 4.071 8 C 0.019 3.981 9 C 0.572 3.428 10 O -0.586 6.586 11 N -0.597 5.597 12 C 0.108 3.892 13 C -0.114 4.114 14 C -0.069 4.069 15 C -0.123 4.123 16 C 0.167 3.833 17 N -0.743 5.743 18 C -0.242 4.242 19 H 0.078 0.922 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.264 1.264 24 H -0.297 1.297 25 H -0.292 1.292 26 C 0.127 3.873 27 N -0.418 5.418 28 C 0.072 3.928 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.174 0.826 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.037 0.963 46 H 0.016 0.984 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.042 0.958 50 H 0.044 0.956 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 36.003 0.155 36.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.008 3.992 3 C -0.204 4.204 4 O -0.214 6.214 5 C 0.066 3.934 6 C -0.195 4.195 7 C -0.092 4.092 8 C -0.117 4.117 9 C 0.361 3.639 10 O -0.467 6.467 11 N -0.328 5.328 12 C -0.013 4.013 13 C -0.153 4.153 14 C -0.070 4.070 15 C -0.181 4.181 16 C 0.041 3.959 17 N -0.386 5.386 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.225 1.225 25 H -0.219 1.219 26 C 0.004 3.996 27 N -0.130 5.130 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.191 0.809 37 H 0.163 0.837 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.523 35.255 0.558 35.435 hybrid contribution -0.602 -1.319 -1.532 2.110 sum -4.125 33.936 -0.974 34.200 Atomic orbital electron populations 1.22409 0.94001 1.03047 1.04386 1.22886 0.95207 0.94603 0.86474 1.21893 1.02143 0.92145 1.04231 1.86147 1.80034 1.14703 1.40517 1.20497 0.93418 0.84532 0.94909 1.21943 1.03919 0.93708 0.99942 1.21961 0.94384 0.94832 0.98005 1.20566 1.04958 0.92375 0.93817 1.18017 0.77474 0.86943 0.81483 1.90775 1.52566 1.68114 1.35238 1.48458 1.58332 1.07703 1.18258 1.22887 1.00819 0.96321 0.81259 1.23004 1.03422 0.91327 0.97501 1.21715 0.96473 0.95799 0.93052 1.21667 0.92770 1.01111 1.02506 1.20815 0.96337 0.85262 0.93526 1.42605 1.66603 1.03398 1.26009 1.19700 1.27190 0.85954 1.04528 0.90443 1.25587 1.02113 1.01876 0.97483 1.69842 1.46664 1.30410 1.15292 0.85057 0.77139 0.79966 0.77503 1.18831 1.22455 1.21899 1.21854 0.99317 0.80344 0.98053 1.67778 1.13698 1.08161 1.23388 1.22800 0.99051 0.88158 0.99102 0.92563 0.91445 0.88814 0.89699 0.91713 0.88420 0.91361 0.80902 0.83688 0.90233 0.86545 0.90310 0.86616 0.91375 0.90817 0.94771 0.94540 0.96632 0.79375 0.94142 0.93982 0.93791 0.78490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 9.19 71.98 0.66 -0.39 16 2 C 0.06 0.44 2.85 30.59 0.09 0.53 16 3 C -0.15 -0.62 9.56 71.98 0.69 0.07 16 4 O -0.30 -3.62 9.80 -90.47 -0.89 -4.50 16 5 C 0.12 1.69 6.63 22.75 0.15 1.84 16 6 C -0.17 -2.52 8.34 22.53 0.19 -2.33 16 7 C -0.07 -1.55 9.62 22.59 0.22 -1.33 16 8 C 0.02 0.49 6.72 41.86 0.28 0.77 16 9 C 0.57 20.13 7.83 86.81 0.68 20.80 16 10 O -0.59 -25.31 16.64 -3.89 -0.06 -25.37 16 11 N -0.60 -19.72 3.32 -814.64 -2.71 -22.43 16 12 C 0.11 2.60 5.63 86.93 0.49 3.09 16 13 C -0.11 -2.70 6.04 32.06 0.19 -2.51 16 14 C -0.07 -2.28 0.61 -50.99 -0.03 -2.31 16 15 C -0.12 -3.86 8.25 71.98 0.59 -3.26 16 16 C 0.17 6.80 5.07 86.38 0.44 7.24 16 17 N -0.74 -39.05 5.15 -343.45 -1.77 -40.82 16 18 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 21 N -0.97 -61.97 13.06 21.65 0.28 -61.69 16 22 Si 0.97 47.82 29.55 68.60 2.03 49.85 16 23 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 C 0.13 4.92 5.47 86.73 0.47 5.40 16 27 N -0.42 -9.01 6.57 -184.53 -1.21 -10.22 16 28 C 0.07 1.13 11.14 85.00 0.95 2.08 16 29 H 0.06 0.44 6.97 -2.39 -0.02 0.42 16 30 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.09 0.46 6.32 -2.38 -0.02 0.44 16 33 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 35 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.17 1.53 5.59 -2.91 -0.02 1.52 16 37 H 0.15 3.27 7.63 -2.91 -0.02 3.25 16 38 H 0.08 1.73 7.71 -2.39 -0.02 1.71 16 39 H 0.12 2.51 5.87 -2.38 -0.01 2.50 16 40 H 0.08 1.86 8.04 -2.39 -0.02 1.84 16 41 H 0.12 2.05 8.04 -2.39 -0.02 2.03 16 42 H 0.07 1.83 7.44 -2.39 -0.02 1.81 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.03 1.30 7.11 -2.39 -0.02 1.28 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.02 0.66 8.13 -2.39 -0.02 0.64 16 47 H 0.37 21.12 6.37 -92.71 -0.59 20.53 16 48 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 49 H 0.04 1.89 7.82 -2.38 -0.02 1.87 16 50 H 0.04 1.90 7.84 -2.39 -0.02 1.89 16 51 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -77.85 405.93 3.38 -74.47 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.34 Total: 28.36 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.37 Total: 12.36 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -5.41 Total: -135.16 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.95 Total: -29.87 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -77.85 3.38 -74.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733444612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.637 kcal (2) G-P(sol) polarization free energy of solvation -77.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds