Wall clock time and date at job start Wed Apr 1 2020 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47183 * 2 1 4 4 O 1.42904 * 109.46983 * 119.99569 * 2 1 3 5 5 C 1.35665 * 116.99924 * 89.99850 * 4 2 1 6 6 C 1.39286 * 119.62132 * 180.02562 * 5 4 2 7 7 C 1.38327 * 119.30665 * 180.02562 * 6 5 4 8 8 C 1.38780 * 118.56091 * 359.97438 * 7 6 5 9 9 C 1.39118 * 119.18981 * 0.02562 * 8 7 6 10 10 C 1.48149 * 119.69337 * 179.97438 * 9 8 7 11 11 O 1.21525 * 119.99719 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00552 * 179.97438 * 10 9 8 13 13 C 1.47423 * 125.64318 * 4.93002 * 12 10 9 14 14 C 1.54912 * 104.83021 * 204.14869 * 13 12 10 15 15 C 1.55150 * 101.58214 * 322.99339 * 14 13 12 16 16 C 1.47023 * 125.65232 * 184.95809 * 12 10 9 17 17 H 1.08996 * 110.00904 * 59.42427 * 16 12 10 18 18 C 1.53005 * 109.87940 * 298.33559 * 16 12 10 19 19 N 1.46500 * 109.46691 * 178.69025 * 18 16 12 20 20 C 1.46500 * 120.00012 * 274.00674 * 19 18 16 21 21 C 1.36932 * 119.99820 * 94.01286 * 19 18 16 22 22 H 1.08002 * 119.99904 * 335.74961 * 21 19 18 23 23 C 1.38810 * 120.00146 * 155.75280 * 21 19 18 24 24 N 1.31625 * 119.99887 * 158.52216 * 23 21 19 25 25 Si 1.86801 * 120.00106 * 338.80242 * 23 21 19 26 26 H 1.48501 * 109.47037 * 84.81587 * 25 23 21 27 27 H 1.48494 * 109.47188 * 204.82055 * 25 23 21 28 28 H 1.48499 * 109.46584 * 324.81653 * 25 23 21 29 29 N 1.31902 * 119.61528 * 0.25555 * 5 4 2 30 30 H 1.08997 * 109.47059 * 300.00670 * 1 2 3 31 31 H 1.08998 * 109.47121 * 60.00293 * 1 2 3 32 32 H 1.08994 * 109.47144 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47059 * 239.99330 * 2 1 3 34 34 H 1.09007 * 109.47157 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46756 * 299.99328 * 3 2 1 36 36 H 1.08997 * 109.47670 * 59.99704 * 3 2 1 37 37 H 1.08002 * 120.34258 * 0.02562 * 6 5 4 38 38 H 1.08007 * 120.71763 * 179.97438 * 7 6 5 39 39 H 1.08004 * 120.40022 * 180.02562 * 8 7 6 40 40 H 1.09003 * 110.36472 * 85.31328 * 13 12 10 41 41 H 1.08998 * 110.46634 * 323.03733 * 13 12 10 42 42 H 1.09003 * 111.00491 * 204.91999 * 14 13 12 43 43 H 1.08993 * 111.00254 * 81.07099 * 14 13 12 44 44 H 1.09005 * 110.72501 * 277.13523 * 15 14 13 45 45 H 1.09000 * 110.71753 * 153.86712 * 15 14 13 46 46 H 1.08998 * 109.46871 * 58.69433 * 18 16 12 47 47 H 1.08996 * 109.47447 * 298.69397 * 18 16 12 48 48 H 1.08999 * 109.46969 * 268.72506 * 20 19 18 49 49 H 1.09003 * 109.47215 * 28.72007 * 20 19 18 50 50 H 1.08999 * 109.46738 * 148.72416 * 20 19 18 51 51 H 0.97007 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2116 -2.0108 1.0655 6 6 2.6749 -2.7219 2.1699 7 6 2.8824 -4.0850 2.0591 8 6 2.6192 -4.6995 0.8429 9 6 2.1581 -3.9300 -0.2204 10 6 1.8741 -4.5744 -1.5238 11 8 2.0446 -5.7698 -1.6605 12 7 1.4268 -3.8349 -2.5580 13 6 1.2741 -2.3686 -2.5631 14 6 0.2025 -2.0853 -3.6453 15 6 0.5516 -3.1522 -4.7163 16 6 1.0096 -4.3570 -3.8676 17 1 0.1846 -5.0584 -3.7439 18 6 2.1884 -5.0553 -4.5488 19 7 1.7549 -5.5989 -5.8383 20 6 1.1389 -6.9265 -5.9037 21 6 1.9256 -4.8661 -6.9824 22 1 1.9991 -3.7899 -6.9284 23 6 2.0040 -5.5064 -8.2115 24 7 1.7451 -4.8415 -9.3176 25 14 2.4692 -7.3136 -8.2952 26 1 1.2564 -8.1467 -8.0944 27 1 3.0599 -7.6116 -9.6247 28 1 3.4611 -7.6190 -7.2332 29 7 1.9745 -2.6217 -0.0793 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 2.8700 -2.2142 3.1030 38 1 3.2415 -4.6586 2.9008 39 1 2.7704 -5.7622 0.7235 40 1 2.2169 -1.8900 -2.8284 41 1 0.9321 -2.0176 -1.5895 42 1 0.3103 -1.0780 -4.0477 43 1 -0.8016 -2.2414 -3.2511 44 1 1.3601 -2.8035 -5.3589 45 1 -0.3282 -3.4085 -5.3065 46 1 2.5461 -5.8662 -3.9144 47 1 2.9928 -4.3374 -4.7090 48 1 1.9106 -7.6769 -6.0757 49 1 0.6299 -7.1377 -4.9633 50 1 0.4181 -6.9526 -6.7209 51 1 1.7995 -5.2891 -10.1765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733938717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:09 Heat of formation + Delta-G solvation = 7.335450 kcal Electronic energy + Delta-G solvation = -32062.276664 eV Core-core repulsion = 27963.747973 eV Total energy + Delta-G solvation = -4098.528691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.21736 -39.76755 -38.48328 -37.20395 -35.53421 -33.63752 -33.08333 -31.64494 -31.25112 -30.42348 -29.52424 -27.58640 -26.08132 -25.64197 -25.05563 -23.85532 -22.60056 -21.48339 -21.27498 -20.74415 -19.38308 -18.10652 -17.46647 -16.86223 -16.40760 -16.17413 -16.03642 -15.86509 -15.21402 -15.09282 -14.69780 -14.42554 -14.19042 -13.85936 -13.66825 -13.57166 -13.29539 -13.03485 -12.86095 -12.63913 -12.58879 -12.53008 -12.48806 -12.27857 -12.19689 -12.03476 -11.93469 -11.27655 -11.16498 -11.12590 -10.90945 -10.78284 -10.46906 -10.32416 -10.25430 -10.15516 -9.89402 -9.86526 -9.44590 -9.38521 -8.85121 -8.68480 -8.29765 -6.91197 -5.90840 -3.25111 0.45195 0.98044 2.67511 2.74089 3.01883 3.41387 3.55343 3.60252 3.68009 3.82429 4.46160 4.56811 4.60878 4.63560 4.65651 4.72500 4.87485 4.90045 4.93365 5.10177 5.18172 5.21903 5.25290 5.29511 5.41883 5.45562 5.47206 5.53439 5.63507 5.64854 5.77592 5.79573 5.83592 5.86510 5.95868 6.03463 6.09910 6.11727 6.28547 6.34974 6.39538 6.48656 6.57358 6.66819 6.78095 6.83095 6.93218 7.00432 7.38982 7.71679 7.98874 8.25428 8.36566 8.99493 9.78527 10.12566 11.25012 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.003034 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.237063 B = 9226.139161 C =10550.397509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 C -0.151 4.151 4 O -0.301 6.301 5 C 0.320 3.680 6 C -0.174 4.174 7 C -0.046 4.046 8 C -0.151 4.151 9 C 0.131 3.869 10 C 0.576 3.424 11 O -0.528 6.528 12 N -0.587 5.587 13 C 0.092 3.908 14 C -0.142 4.142 15 C -0.109 4.109 16 C 0.115 3.885 17 H 0.069 0.931 18 C 0.144 3.856 19 N -0.607 5.607 20 C 0.104 3.896 21 C -0.261 4.261 22 H 0.090 0.910 23 C 0.024 3.976 24 N -0.909 5.909 25 Si 0.891 3.109 26 H -0.288 1.288 27 H -0.308 1.308 28 H -0.279 1.279 29 N -0.512 5.512 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.008 0.992 49 H 0.036 0.964 50 H 0.056 0.944 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 10.654 24.645 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 C -0.208 4.208 4 O -0.208 6.208 5 C 0.139 3.861 6 C -0.194 4.194 7 C -0.071 4.071 8 C -0.172 4.172 9 C -0.006 4.006 10 C 0.362 3.638 11 O -0.405 6.405 12 N -0.319 5.319 13 C -0.030 4.030 14 C -0.180 4.180 15 C -0.146 4.146 16 C 0.011 3.989 17 H 0.087 0.913 18 C 0.017 3.983 19 N -0.331 5.331 20 C -0.041 4.041 21 C -0.389 4.389 22 H 0.107 0.893 23 C -0.175 4.175 24 N -0.553 5.553 25 Si 0.722 3.278 26 H -0.215 1.215 27 H -0.236 1.236 28 H -0.206 1.206 29 N -0.239 5.239 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.026 0.974 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.648 10.622 23.905 26.210 hybrid contribution 0.487 -1.444 0.321 1.557 sum -1.161 9.179 24.225 25.932 Atomic orbital electron populations 1.22256 0.94702 1.02983 1.02910 1.22544 0.94544 0.93071 0.88011 1.21909 1.02053 0.93714 1.03104 1.86306 1.80146 1.15549 1.38808 1.19866 0.91694 0.84894 0.89617 1.21269 1.04803 0.94425 0.98947 1.21442 0.94771 0.93414 0.97506 1.21987 1.00318 1.02470 0.92458 1.20903 0.96675 0.88112 0.94866 1.17463 0.78437 0.85744 0.82177 1.90806 1.52923 1.14017 1.82720 1.48445 1.62189 1.08375 1.12893 1.22865 0.98776 0.80161 1.01237 1.22910 0.98436 1.00046 0.96633 1.22595 1.02848 0.92961 0.96243 1.22569 0.99381 0.96535 0.80419 0.91300 1.21084 0.93295 0.97081 0.86888 1.44083 1.69345 1.16405 1.03225 1.21380 0.95923 0.86898 0.99888 1.18945 1.45480 0.91469 0.82993 0.89262 1.25180 0.99661 0.97468 0.95190 1.69853 1.50702 1.36982 0.97741 0.86962 0.78827 0.86892 0.75071 1.21502 1.23649 1.20554 1.67460 1.20777 1.11361 1.24311 0.91945 0.90650 0.91968 0.88759 0.91770 0.90220 0.91700 0.83809 0.83408 0.83118 0.92002 0.87471 0.90311 0.91403 0.89581 0.90013 0.92917 0.92626 0.97396 0.94540 0.92579 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.07 37.16 0.34 -0.98 16 2 C 0.07 0.63 2.89 -26.73 -0.08 0.56 16 3 C -0.15 -0.99 9.56 37.16 0.36 -0.64 16 4 O -0.30 -3.01 9.76 -18.70 -0.18 -3.19 16 5 C 0.32 3.43 7.46 -17.13 -0.13 3.30 16 6 C -0.17 -1.49 10.05 -39.16 -0.39 -1.88 16 7 C -0.05 -0.37 10.16 -39.35 -0.40 -0.77 16 8 C -0.15 -1.66 9.63 -39.05 -0.38 -2.04 16 9 C 0.13 1.76 6.72 -83.02 -0.56 1.20 16 10 C 0.58 9.49 7.66 -12.19 -0.09 9.40 16 11 O -0.53 -10.16 15.15 5.34 0.08 -10.08 16 12 N -0.59 -9.41 3.06 -164.00 -0.50 -9.91 16 13 C 0.09 1.20 5.45 -2.53 -0.01 1.19 16 14 C -0.14 -1.79 7.08 -24.58 -0.17 -1.97 16 15 C -0.11 -1.82 5.64 -24.90 -0.14 -1.96 16 16 C 0.12 2.09 3.17 -66.95 -0.21 1.88 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 18 C 0.14 3.08 5.10 -4.04 -0.02 3.06 16 19 N -0.61 -14.82 2.59 -181.12 -0.47 -15.29 16 20 C 0.10 2.42 8.36 59.85 0.50 2.92 16 21 C -0.26 -7.19 9.30 -15.06 -0.14 -7.33 16 22 H 0.09 2.55 6.55 -52.49 -0.34 2.20 16 23 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 24 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 25 Si 0.89 23.34 23.95 -169.99 -4.07 19.27 16 26 H -0.29 -7.26 6.46 56.52 0.37 -6.89 16 27 H -0.31 -8.17 7.11 56.52 0.40 -7.77 16 28 H -0.28 -7.40 6.77 56.52 0.38 -7.01 16 29 N -0.51 -6.19 5.15 -9.88 -0.05 -6.24 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 7.80 -51.93 -0.41 0.16 16 33 H 0.09 0.90 5.26 -51.93 -0.27 0.63 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.15 1.62 7.63 -52.48 -0.40 1.22 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.11 1.27 3.43 -51.93 -0.18 1.09 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.09 1.61 6.25 -51.93 -0.32 1.29 16 45 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.05 1.17 6.61 -51.93 -0.34 0.83 16 47 H 0.06 1.21 7.97 -51.93 -0.41 0.80 16 48 H 0.01 0.20 5.12 -51.93 -0.27 -0.07 16 49 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 50 H 0.06 1.35 6.29 -51.93 -0.33 1.02 16 51 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -32.83 393.33 -8.08 -40.91 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.96 Total: -0.89 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.62 Total: 6.53 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.25 Total: -58.46 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.10 Total: -13.27 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.07 Total: 19.27 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.83 -8.08 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733938717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.241 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds