Wall clock time and date at job start Wed Apr 1 2020 04:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47183 * 2 1 4 4 O 1.42904 * 109.46983 * 119.99569 * 2 1 3 5 5 C 1.35665 * 116.99924 * 89.99850 * 4 2 1 6 6 C 1.39286 * 119.62132 * 180.02562 * 5 4 2 7 7 C 1.38327 * 119.30665 * 180.02562 * 6 5 4 8 8 C 1.38780 * 118.56091 * 359.97438 * 7 6 5 9 9 C 1.39118 * 119.18981 * 0.02562 * 8 7 6 10 10 C 1.48149 * 119.69337 * 179.97438 * 9 8 7 11 11 O 1.21525 * 119.99719 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00552 * 179.97438 * 10 9 8 13 13 C 1.47423 * 125.64318 * 4.93002 * 12 10 9 14 14 C 1.54912 * 104.83021 * 204.14869 * 13 12 10 15 15 C 1.55150 * 101.58214 * 322.99339 * 14 13 12 16 16 C 1.47023 * 125.65232 * 184.95809 * 12 10 9 17 17 H 1.08996 * 110.00904 * 59.42427 * 16 12 10 18 18 C 1.53005 * 109.87940 * 298.33559 * 16 12 10 19 19 N 1.46500 * 109.46691 * 178.69025 * 18 16 12 20 20 C 1.46500 * 120.00012 * 274.00674 * 19 18 16 21 21 C 1.36932 * 119.99820 * 94.01286 * 19 18 16 22 22 H 1.08002 * 119.99904 * 335.74961 * 21 19 18 23 23 C 1.38810 * 120.00146 * 155.75280 * 21 19 18 24 24 N 1.31625 * 119.99887 * 158.52216 * 23 21 19 25 25 Si 1.86801 * 120.00106 * 338.80242 * 23 21 19 26 26 H 1.48501 * 109.47037 * 84.81587 * 25 23 21 27 27 H 1.48494 * 109.47188 * 204.82055 * 25 23 21 28 28 H 1.48499 * 109.46584 * 324.81653 * 25 23 21 29 29 N 1.31902 * 119.61528 * 0.25555 * 5 4 2 30 30 H 1.08997 * 109.47059 * 300.00670 * 1 2 3 31 31 H 1.08998 * 109.47121 * 60.00293 * 1 2 3 32 32 H 1.08994 * 109.47144 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47059 * 239.99330 * 2 1 3 34 34 H 1.09007 * 109.47157 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46756 * 299.99328 * 3 2 1 36 36 H 1.08997 * 109.47670 * 59.99704 * 3 2 1 37 37 H 1.08002 * 120.34258 * 0.02562 * 6 5 4 38 38 H 1.08007 * 120.71763 * 179.97438 * 7 6 5 39 39 H 1.08004 * 120.40022 * 180.02562 * 8 7 6 40 40 H 1.09003 * 110.36472 * 85.31328 * 13 12 10 41 41 H 1.08998 * 110.46634 * 323.03733 * 13 12 10 42 42 H 1.09003 * 111.00491 * 204.91999 * 14 13 12 43 43 H 1.08993 * 111.00254 * 81.07099 * 14 13 12 44 44 H 1.09005 * 110.72501 * 277.13523 * 15 14 13 45 45 H 1.09000 * 110.71753 * 153.86712 * 15 14 13 46 46 H 1.08998 * 109.46871 * 58.69433 * 18 16 12 47 47 H 1.08996 * 109.47447 * 298.69397 * 18 16 12 48 48 H 1.08999 * 109.46969 * 268.72506 * 20 19 18 49 49 H 1.09003 * 109.47215 * 28.72007 * 20 19 18 50 50 H 1.08999 * 109.46738 * 148.72416 * 20 19 18 51 51 H 0.97007 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2116 -2.0108 1.0655 6 6 2.6749 -2.7219 2.1699 7 6 2.8824 -4.0850 2.0591 8 6 2.6192 -4.6995 0.8429 9 6 2.1581 -3.9300 -0.2204 10 6 1.8741 -4.5744 -1.5238 11 8 2.0446 -5.7698 -1.6605 12 7 1.4268 -3.8349 -2.5580 13 6 1.2741 -2.3686 -2.5631 14 6 0.2025 -2.0853 -3.6453 15 6 0.5516 -3.1522 -4.7163 16 6 1.0096 -4.3570 -3.8676 17 1 0.1846 -5.0584 -3.7439 18 6 2.1884 -5.0553 -4.5488 19 7 1.7549 -5.5989 -5.8383 20 6 1.1389 -6.9265 -5.9037 21 6 1.9256 -4.8661 -6.9824 22 1 1.9991 -3.7899 -6.9284 23 6 2.0040 -5.5064 -8.2115 24 7 1.7451 -4.8415 -9.3176 25 14 2.4692 -7.3136 -8.2952 26 1 1.2564 -8.1467 -8.0944 27 1 3.0599 -7.6116 -9.6247 28 1 3.4611 -7.6190 -7.2332 29 7 1.9745 -2.6217 -0.0793 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 2.8700 -2.2142 3.1030 38 1 3.2415 -4.6586 2.9008 39 1 2.7704 -5.7622 0.7235 40 1 2.2169 -1.8900 -2.8284 41 1 0.9321 -2.0176 -1.5895 42 1 0.3103 -1.0780 -4.0477 43 1 -0.8016 -2.2414 -3.2511 44 1 1.3601 -2.8035 -5.3589 45 1 -0.3282 -3.4085 -5.3065 46 1 2.5461 -5.8662 -3.9144 47 1 2.9928 -4.3374 -4.7090 48 1 1.9106 -7.6769 -6.0757 49 1 0.6299 -7.1377 -4.9633 50 1 0.4181 -6.9526 -6.7209 51 1 1.7995 -5.2891 -10.1765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733938717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:08 Heat of formation + Delta-G solvation = -13.463663 kcal Electronic energy + Delta-G solvation = -32063.178581 eV Core-core repulsion = 27963.747973 eV Total energy + Delta-G solvation = -4099.430608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.11784 -40.91807 -39.39606 -38.49471 -37.35416 -34.37470 -33.94914 -33.67073 -32.44069 -31.38640 -30.98218 -28.14671 -28.02346 -27.11786 -26.29352 -24.65423 -23.84498 -22.92099 -22.19147 -21.96058 -20.68693 -18.98798 -18.87669 -18.61306 -17.65933 -17.13121 -17.00225 -16.84614 -16.71101 -16.45507 -15.77271 -15.62480 -15.40403 -15.38034 -14.88562 -14.67568 -14.39276 -14.27546 -14.26838 -14.06582 -13.92327 -13.82790 -13.45419 -13.21985 -13.13364 -13.11176 -12.87037 -12.82173 -12.63663 -12.29722 -12.22611 -12.11092 -11.86733 -11.69448 -11.63128 -11.58513 -11.52155 -11.27972 -10.98868 -10.76890 -10.43192 -9.86548 -9.54617 -8.92828 -8.15511 -5.46697 -0.42067 0.23588 1.30859 1.40619 1.49170 1.64986 1.79696 2.00035 2.42878 2.76139 2.86701 3.10409 3.34484 3.57232 3.73897 3.87284 3.90606 3.98453 3.99697 4.03619 4.06913 4.19825 4.29009 4.31236 4.39096 4.44651 4.47539 4.50872 4.61520 4.74768 4.77978 4.83435 4.86244 4.88258 4.89279 4.92729 4.99920 5.00812 5.07184 5.09305 5.11484 5.16800 5.28107 5.32399 5.37987 5.40633 5.46027 5.85667 6.13589 6.19396 6.44560 6.57792 6.87426 7.01930 7.61521 7.98444 9.03491 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.003034 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.237063 B = 9226.139161 C =10550.397509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.306 3.694 6 C -0.160 4.160 7 C -0.032 4.032 8 C -0.152 4.152 9 C 0.103 3.897 10 C 0.570 3.430 11 O -0.566 6.566 12 N -0.591 5.591 13 C 0.096 3.904 14 C -0.126 4.126 15 C -0.106 4.106 16 C 0.125 3.875 17 H 0.058 0.942 18 C 0.151 3.849 19 N -0.617 5.617 20 C 0.104 3.896 21 C -0.242 4.242 22 H 0.072 0.928 23 C -0.029 4.029 24 N -0.950 5.950 25 Si 0.942 3.058 26 H -0.271 1.271 27 H -0.313 1.313 28 H -0.284 1.284 29 N -0.521 5.521 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.175 0.825 38 H 0.189 0.811 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.043 0.957 47 H 0.044 0.956 48 H 0.005 0.995 49 H 0.061 0.939 50 H 0.047 0.953 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 11.593 27.867 30.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 C -0.204 4.204 4 O -0.212 6.212 5 C 0.125 3.875 6 C -0.180 4.180 7 C -0.057 4.057 8 C -0.174 4.174 9 C -0.033 4.033 10 C 0.358 3.642 11 O -0.445 6.445 12 N -0.322 5.322 13 C -0.026 4.026 14 C -0.164 4.164 15 C -0.144 4.144 16 C 0.019 3.981 17 H 0.076 0.924 18 C 0.024 3.976 19 N -0.341 5.341 20 C -0.040 4.040 21 C -0.371 4.371 22 H 0.090 0.910 23 C -0.224 4.224 24 N -0.596 5.596 25 Si 0.773 3.227 26 H -0.197 1.197 27 H -0.242 1.242 28 H -0.211 1.211 29 N -0.248 5.248 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.192 0.808 38 H 0.207 0.793 39 H 0.166 0.834 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.023 0.977 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.851 11.575 27.172 29.592 hybrid contribution 0.587 -1.643 -0.513 1.818 sum -1.264 9.932 26.659 28.477 Atomic orbital electron populations 1.22231 0.94060 1.02191 1.03950 1.22693 0.95099 0.93807 0.87167 1.21913 1.01801 0.92549 1.04134 1.86316 1.80268 1.15195 1.39392 1.20208 0.92150 0.85300 0.89872 1.21713 1.02452 0.94554 0.99290 1.21860 0.93170 0.93429 0.97260 1.22131 0.99851 1.02375 0.93070 1.20488 0.99846 0.89003 0.93917 1.18047 0.77391 0.85497 0.83221 1.90764 1.54524 1.15634 1.83612 1.48516 1.62158 1.09588 1.11942 1.23009 0.98989 0.78306 1.02277 1.22900 0.98951 0.99857 0.94721 1.22433 1.01346 0.93894 0.96711 1.22183 0.97326 0.96770 0.81772 0.92363 1.21078 0.94392 0.96608 0.85543 1.44188 1.69735 1.16818 1.03381 1.21388 0.95673 0.86011 1.00970 1.18948 1.43159 0.91094 0.83928 0.91045 1.25692 1.00753 1.00803 0.95108 1.69944 1.53036 1.38497 0.98167 0.86110 0.78833 0.83364 0.74368 1.19711 1.24154 1.21068 1.67241 1.21312 1.10758 1.25481 0.91339 0.89232 0.93574 0.89988 0.92163 0.88807 0.91061 0.80771 0.79338 0.83416 0.92064 0.85805 0.87810 0.89995 0.91947 0.91281 0.93825 0.93712 0.97681 0.92012 0.93403 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.07 71.98 0.65 -1.57 16 2 C 0.07 1.03 2.89 30.59 0.09 1.12 16 3 C -0.15 -1.61 9.56 71.98 0.69 -0.92 16 4 O -0.30 -5.41 9.76 -89.82 -0.88 -6.29 16 5 C 0.31 5.88 7.46 84.93 0.63 6.51 16 6 C -0.16 -2.17 10.05 22.54 0.23 -1.94 16 7 C -0.03 -0.41 10.16 22.42 0.23 -0.18 16 8 C -0.15 -3.14 9.63 22.61 0.22 -2.92 16 9 C 0.10 2.70 6.72 41.83 0.28 2.98 16 10 C 0.57 19.06 7.66 86.88 0.67 19.73 16 11 O -0.57 -22.35 15.15 -3.79 -0.06 -22.40 16 12 N -0.59 -19.08 3.06 -791.08 -2.42 -21.50 16 13 C 0.10 2.43 5.45 86.86 0.47 2.90 16 14 C -0.13 -3.03 7.08 31.98 0.23 -2.80 16 15 C -0.11 -3.59 5.64 31.78 0.18 -3.41 16 16 C 0.12 4.61 3.17 45.34 0.14 4.75 16 17 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 18 C 0.15 6.58 5.10 86.38 0.44 7.02 16 19 N -0.62 -30.56 2.59 -726.94 -1.88 -32.44 16 20 C 0.10 4.81 8.36 127.77 1.07 5.88 16 21 C -0.24 -13.65 9.30 84.03 0.78 -12.87 16 22 H 0.07 4.23 6.55 -2.91 -0.02 4.21 16 23 C -0.03 -1.68 5.24 84.86 0.44 -1.24 16 24 N -0.95 -59.38 13.97 21.65 0.30 -59.08 16 25 Si 0.94 48.65 23.95 68.60 1.64 50.29 16 26 H -0.27 -13.14 6.46 99.48 0.64 -12.50 16 27 H -0.31 -16.27 7.11 99.48 0.71 -15.57 16 28 H -0.28 -14.75 6.77 99.48 0.67 -14.08 16 29 N -0.52 -11.97 5.15 -298.21 -1.54 -13.51 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.77 7.80 -2.39 -0.02 0.75 16 33 H 0.08 1.45 5.26 -2.39 -0.01 1.43 16 34 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.15 3.08 7.63 -2.91 -0.02 3.06 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.12 2.79 3.43 -2.39 -0.01 2.79 16 42 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 2.42 6.25 -2.38 -0.01 2.40 16 45 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.04 1.99 6.61 -2.39 -0.02 1.97 16 47 H 0.04 2.02 7.97 -2.39 -0.02 2.00 16 48 H 0.01 0.26 5.12 -2.39 -0.01 0.24 16 49 H 0.06 2.52 8.06 -2.39 -0.02 2.50 16 50 H 0.05 2.28 6.29 -2.39 -0.02 2.26 16 51 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -73.07 393.33 3.44 -69.63 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.83 Total: 12.26 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 7.44 Total: 23.04 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -5.54 Total: -126.52 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.93 Total: -28.69 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.64 Total: 50.29 kcal Total: -73.07 3.44 -69.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733938717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.166 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds