Wall clock time and date at job start Wed Apr 1 2020 04:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46711 * 2 1 4 4 O 1.42901 * 109.47296 * 120.00146 * 2 1 3 5 5 C 1.35647 * 117.00073 * 85.35605 * 4 2 1 6 6 C 1.39342 * 120.53955 * 354.59690 * 5 4 2 7 7 C 1.38309 * 118.43819 * 180.28568 * 6 5 4 8 8 C 1.38767 * 119.44208 * 359.72629 * 7 6 5 9 9 N 1.31377 * 121.06736 * 359.97438 * 8 7 6 10 10 C 1.32854 * 121.69861 * 0.02562 * 9 8 7 11 11 C 1.47826 * 119.78519 * 180.02562 * 10 9 8 12 12 O 1.21558 * 120.00302 * 179.97438 * 11 10 9 13 13 N 1.34781 * 119.99738 * 0.02562 * 11 10 9 14 14 C 1.47419 * 125.65159 * 4.13421 * 13 11 10 15 15 C 1.54903 * 104.83536 * 204.15039 * 14 13 11 16 16 C 1.55162 * 101.58293 * 322.99007 * 15 14 13 17 17 C 1.47025 * 125.64632 * 184.15835 * 13 11 10 18 18 H 1.08999 * 110.01260 * 59.42811 * 17 13 11 19 19 C 1.53002 * 109.88247 * 298.33558 * 17 13 11 20 20 N 1.46503 * 109.46852 * 176.18821 * 19 17 13 21 21 C 1.46497 * 119.99991 * 275.46919 * 20 19 17 22 22 C 1.36937 * 119.99751 * 95.47408 * 20 19 17 23 23 H 1.08000 * 120.00126 * 2.61189 * 22 20 19 24 24 C 1.38808 * 119.99753 * 182.60636 * 22 20 19 25 25 N 1.31624 * 120.00537 * 349.27162 * 24 22 20 26 26 Si 1.86801 * 119.99793 * 169.54178 * 24 22 20 27 27 H 1.48496 * 109.47167 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47219 * 120.00412 * 26 24 22 29 29 H 1.48502 * 109.47325 * 240.00591 * 26 24 22 30 30 H 1.08995 * 109.47430 * 299.99655 * 1 2 3 31 31 H 1.09001 * 109.47129 * 59.99712 * 1 2 3 32 32 H 1.09006 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47430 * 240.00344 * 2 1 3 34 34 H 1.09005 * 109.46751 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47238 * 299.99933 * 3 2 1 36 36 H 1.09007 * 109.47047 * 60.00460 * 3 2 1 37 37 H 1.08000 * 120.78505 * 0.02562 * 6 5 4 38 38 H 1.08001 * 120.27667 * 179.70724 * 7 6 5 39 39 H 1.07993 * 119.46545 * 179.97438 * 8 7 6 40 40 H 1.08999 * 110.36579 * 85.30957 * 14 13 11 41 41 H 1.09005 * 110.45535 * 323.03430 * 14 13 11 42 42 H 1.09000 * 111.00587 * 204.91628 * 15 14 13 43 43 H 1.09000 * 111.00651 * 81.06236 * 15 14 13 44 44 H 1.09003 * 110.72013 * 277.13920 * 16 15 14 45 45 H 1.08999 * 110.72387 * 153.86521 * 16 15 14 46 46 H 1.09003 * 109.47100 * 56.19126 * 19 17 13 47 47 H 1.08996 * 109.47219 * 296.19182 * 19 17 13 48 48 H 1.09001 * 109.47589 * 241.03819 * 21 20 19 49 49 H 1.08997 * 109.47359 * 1.04407 * 21 20 19 50 50 H 1.09000 * 109.46684 * 121.04354 * 21 20 19 51 51 H 0.96992 * 120.00117 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1194 -2.0235 1.0955 6 6 1.6759 -2.7127 -0.0315 7 6 1.8069 -4.0893 -0.0556 8 6 2.3760 -4.7395 1.0303 9 7 2.7927 -4.0684 2.0801 10 6 2.6884 -2.7458 2.1496 11 6 3.1718 -2.0333 3.3513 12 8 3.0787 -0.8232 3.4190 13 7 3.7166 -2.7254 4.3715 14 6 3.9696 -4.1776 4.3863 15 6 3.9909 -4.5612 5.8870 16 6 4.6850 -3.3238 6.5150 17 6 4.1565 -2.1571 5.6541 18 1 3.3172 -1.6762 6.1565 19 6 5.2731 -1.1385 5.4162 20 7 5.6417 -0.5120 6.6883 21 6 4.8798 0.6353 7.1876 22 6 6.6984 -0.9989 7.4104 23 1 7.2863 -1.8175 7.0223 24 6 7.0141 -0.4401 8.6412 25 7 6.4421 0.6832 9.0203 26 14 8.2563 -1.2783 9.7564 27 1 8.7558 -2.5135 9.1008 28 1 9.3940 -0.3581 10.0099 29 1 7.6070 -1.6293 11.0451 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 1.2364 -2.1847 -0.8648 38 1 1.4687 -4.6536 -0.9121 39 1 2.4780 -5.8144 1.0121 40 1 4.9315 -4.3998 3.9243 41 1 3.1699 -4.7090 3.8703 42 1 4.5789 -5.4642 6.0511 43 1 2.9790 -4.6800 6.2743 44 1 5.7687 -3.4052 6.4306 45 1 4.3864 -3.2010 7.5561 46 1 4.9254 -0.3736 4.7218 47 1 6.1421 -1.6437 4.9948 48 1 5.5394 1.4985 7.2770 49 1 4.0723 0.8655 6.4926 50 1 4.4607 0.3955 8.1649 51 1 6.6624 1.0734 9.8805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733940775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:22 Heat of formation + Delta-G solvation = 12.416562 kcal Electronic energy + Delta-G solvation = -31916.362973 eV Core-core repulsion = 27818.054616 eV Total energy + Delta-G solvation = -4098.308357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.15878 -39.45634 -38.59328 -36.99416 -35.16872 -33.54996 -32.82273 -31.38505 -31.04840 -30.26290 -28.71297 -27.58945 -25.80802 -25.29441 -24.69426 -24.02470 -22.42768 -21.34489 -21.07245 -20.44375 -19.08065 -18.33608 -17.32292 -16.85982 -16.72529 -15.97993 -15.71252 -15.39162 -14.93874 -14.78810 -14.59190 -14.46613 -13.99831 -13.58455 -13.44446 -13.29086 -13.19638 -12.79454 -12.77744 -12.64656 -12.53402 -12.48823 -12.26938 -12.16943 -11.84762 -11.63642 -11.28332 -11.07672 -11.03447 -10.83424 -10.76398 -10.67878 -10.26560 -10.17290 -10.03770 -9.98923 -9.89042 -9.64652 -9.54867 -9.23632 -8.65294 -8.44472 -8.07855 -6.73684 -5.51771 -2.91882 0.52627 0.98721 2.83831 2.93210 3.27548 3.45719 3.51745 3.53877 3.82902 4.11922 4.27905 4.41811 4.46678 4.59332 4.61718 4.72096 4.76332 4.86863 5.08263 5.11470 5.23059 5.32229 5.36930 5.44527 5.47515 5.53580 5.56064 5.64657 5.67241 5.82721 5.84632 5.85392 5.96062 5.97812 6.06614 6.17741 6.30808 6.32308 6.53548 6.60685 6.74540 6.82667 6.98420 7.03523 7.06815 7.18533 7.57196 7.81441 7.83555 8.00504 8.08401 8.50281 8.60128 9.40084 10.04716 10.49522 11.47880 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003017 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.588871 B = 9278.162683 C =10821.113712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.069 3.931 3 C -0.148 4.148 4 O -0.262 6.262 5 C 0.141 3.859 6 C -0.180 4.180 7 C -0.112 4.112 8 C 0.050 3.950 9 N -0.414 5.414 10 C 0.054 3.946 11 C 0.576 3.424 12 O -0.512 6.512 13 N -0.593 5.593 14 C 0.100 3.900 15 C -0.142 4.142 16 C -0.107 4.107 17 C 0.116 3.884 18 H 0.067 0.933 19 C 0.149 3.851 20 N -0.606 5.606 21 C 0.170 3.830 22 C -0.237 4.237 23 H 0.074 0.926 24 C -0.008 4.008 25 N -0.916 5.916 26 Si 0.902 3.098 27 H -0.280 1.280 28 H -0.293 1.293 29 H -0.291 1.291 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.043 0.957 48 H 0.046 0.954 49 H -0.006 1.006 50 H 0.034 0.966 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 -10.148 -22.037 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 C -0.205 4.205 4 O -0.172 6.172 5 C 0.090 3.910 6 C -0.206 4.206 7 C -0.132 4.132 8 C -0.110 4.110 9 N -0.126 5.126 10 C -0.085 4.085 11 C 0.362 3.638 12 O -0.387 6.387 13 N -0.327 5.327 14 C -0.023 4.023 15 C -0.180 4.180 16 C -0.145 4.145 17 C 0.011 3.989 18 H 0.085 0.915 19 C 0.020 3.980 20 N -0.329 5.329 21 C 0.026 3.974 22 C -0.366 4.366 23 H 0.092 0.908 24 C -0.204 4.204 25 N -0.564 5.564 26 Si 0.732 3.268 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.218 1.218 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.013 0.987 50 H 0.053 0.947 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.807 -9.551 -21.006 26.391 hybrid contribution 0.141 -0.259 -0.287 0.411 sum -12.667 -9.810 -21.292 26.647 Atomic orbital electron populations 1.22394 0.94890 1.02855 1.03588 1.22606 0.94470 0.94503 0.87162 1.21829 1.02552 0.92949 1.03155 1.86521 1.78886 1.14401 1.37435 1.20014 0.92760 0.84685 0.93519 1.21778 1.04695 0.95551 0.98582 1.22162 0.97210 0.94111 0.99745 1.22768 0.98038 1.00726 0.89462 1.67926 1.13701 1.06226 1.24767 1.20864 1.03031 0.89271 0.95375 1.17194 0.78967 0.86188 0.81418 1.90854 1.56216 1.12363 1.79220 1.48467 1.59399 1.09244 1.15572 1.22644 1.02125 0.81005 0.96549 1.22902 1.01012 0.98816 0.95299 1.22519 1.00918 0.91873 0.99179 1.22689 0.98590 0.95772 0.81854 0.91494 1.21050 0.94040 0.94098 0.88824 1.44004 1.34234 1.33904 1.20800 1.21001 0.92090 0.89733 0.94603 1.19345 1.05519 1.13087 0.98660 0.90846 1.24823 0.99865 0.97427 0.98242 1.70263 1.46313 1.18518 1.21305 0.86199 0.80592 0.78806 0.81154 1.20554 1.22048 1.21812 0.90926 0.90853 0.92172 0.91132 0.91336 0.90625 0.90886 0.83712 0.84238 0.81961 0.92184 0.87929 0.90602 0.91503 0.90262 0.90320 0.93063 0.93817 0.93582 0.98710 0.94747 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.20 37.16 0.34 -1.04 16 2 C 0.07 0.65 2.85 -26.73 -0.08 0.58 16 3 C -0.15 -1.33 9.56 37.16 0.36 -0.98 16 4 O -0.26 -3.72 7.86 -40.59 -0.32 -4.04 16 5 C 0.14 1.86 6.62 -38.56 -0.26 1.61 16 6 C -0.18 -1.63 8.35 -39.14 -0.33 -1.96 16 7 C -0.11 -0.83 10.10 -39.36 -0.40 -1.23 16 8 C 0.05 0.45 11.17 -17.55 -0.20 0.25 16 9 N -0.41 -5.23 6.53 -9.71 -0.06 -5.29 16 10 C 0.05 0.81 6.73 -82.89 -0.56 0.26 16 11 C 0.58 10.79 7.65 -12.34 -0.09 10.70 16 12 O -0.51 -11.19 13.97 -16.64 -0.23 -11.42 16 13 N -0.59 -10.65 3.06 -164.13 -0.50 -11.15 16 14 C 0.10 1.45 6.10 -2.54 -0.02 1.43 16 15 C -0.14 -1.99 7.08 -24.58 -0.17 -2.17 16 16 C -0.11 -1.94 5.74 -24.89 -0.14 -2.08 16 17 C 0.12 2.35 3.15 -66.95 -0.21 2.13 16 18 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 19 C 0.15 3.46 5.05 -4.04 -0.02 3.44 16 20 N -0.61 -16.18 2.81 -181.12 -0.51 -16.69 16 21 C 0.17 4.63 8.99 59.85 0.54 5.16 16 22 C -0.24 -6.62 8.82 -15.06 -0.13 -6.75 16 23 H 0.07 1.99 7.43 -52.49 -0.39 1.60 16 24 C -0.01 -0.22 5.41 -17.43 -0.09 -0.32 16 25 N -0.92 -27.48 9.53 55.49 0.53 -26.96 16 26 Si 0.90 22.36 29.57 -169.99 -5.03 17.33 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.44 6.99 -51.93 -0.36 0.08 16 33 H 0.07 0.53 6.32 -51.93 -0.33 0.20 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.15 0.93 5.62 -52.49 -0.29 0.63 16 38 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.36 5.61 -51.93 -0.29 1.07 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.53 7.04 -51.93 -0.37 1.16 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.05 1.27 6.51 -51.93 -0.34 0.93 16 47 H 0.04 1.01 7.87 -51.93 -0.41 0.60 16 48 H 0.05 1.35 6.96 -51.93 -0.36 0.99 16 49 H -0.01 -0.15 7.87 -51.93 -0.41 -0.56 16 50 H 0.03 0.98 7.15 -51.93 -0.37 0.61 16 51 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -34.41 398.47 -9.71 -44.12 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.13 Total: -0.96 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -1.46 Total: 9.04 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.55 Total: -60.09 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.55 Total: -15.46 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.41 -9.71 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733940775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.540 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds