Wall clock time and date at job start Wed Apr 1 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46711 * 2 1 4 4 O 1.42901 * 109.47296 * 120.00146 * 2 1 3 5 5 C 1.35647 * 117.00073 * 85.35605 * 4 2 1 6 6 C 1.39342 * 120.53955 * 354.59690 * 5 4 2 7 7 C 1.38309 * 118.43819 * 180.28568 * 6 5 4 8 8 C 1.38767 * 119.44208 * 359.72629 * 7 6 5 9 9 N 1.31377 * 121.06736 * 359.97438 * 8 7 6 10 10 C 1.32854 * 121.69861 * 0.02562 * 9 8 7 11 11 C 1.47826 * 119.78519 * 180.02562 * 10 9 8 12 12 O 1.21558 * 120.00302 * 179.97438 * 11 10 9 13 13 N 1.34781 * 119.99738 * 0.02562 * 11 10 9 14 14 C 1.47419 * 125.65159 * 4.13421 * 13 11 10 15 15 C 1.54903 * 104.83536 * 204.15039 * 14 13 11 16 16 C 1.55162 * 101.58293 * 322.99007 * 15 14 13 17 17 C 1.47025 * 125.64632 * 184.15835 * 13 11 10 18 18 H 1.08999 * 110.01260 * 59.42811 * 17 13 11 19 19 C 1.53002 * 109.88247 * 298.33558 * 17 13 11 20 20 N 1.46503 * 109.46852 * 176.18821 * 19 17 13 21 21 C 1.46497 * 119.99991 * 275.46919 * 20 19 17 22 22 C 1.36937 * 119.99751 * 95.47408 * 20 19 17 23 23 H 1.08000 * 120.00126 * 2.61189 * 22 20 19 24 24 C 1.38808 * 119.99753 * 182.60636 * 22 20 19 25 25 N 1.31624 * 120.00537 * 349.27162 * 24 22 20 26 26 Si 1.86801 * 119.99793 * 169.54178 * 24 22 20 27 27 H 1.48496 * 109.47167 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47219 * 120.00412 * 26 24 22 29 29 H 1.48502 * 109.47325 * 240.00591 * 26 24 22 30 30 H 1.08995 * 109.47430 * 299.99655 * 1 2 3 31 31 H 1.09001 * 109.47129 * 59.99712 * 1 2 3 32 32 H 1.09006 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47430 * 240.00344 * 2 1 3 34 34 H 1.09005 * 109.46751 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47238 * 299.99933 * 3 2 1 36 36 H 1.09007 * 109.47047 * 60.00460 * 3 2 1 37 37 H 1.08000 * 120.78505 * 0.02562 * 6 5 4 38 38 H 1.08001 * 120.27667 * 179.70724 * 7 6 5 39 39 H 1.07993 * 119.46545 * 179.97438 * 8 7 6 40 40 H 1.08999 * 110.36579 * 85.30957 * 14 13 11 41 41 H 1.09005 * 110.45535 * 323.03430 * 14 13 11 42 42 H 1.09000 * 111.00587 * 204.91628 * 15 14 13 43 43 H 1.09000 * 111.00651 * 81.06236 * 15 14 13 44 44 H 1.09003 * 110.72013 * 277.13920 * 16 15 14 45 45 H 1.08999 * 110.72387 * 153.86521 * 16 15 14 46 46 H 1.09003 * 109.47100 * 56.19126 * 19 17 13 47 47 H 1.08996 * 109.47219 * 296.19182 * 19 17 13 48 48 H 1.09001 * 109.47589 * 241.03819 * 21 20 19 49 49 H 1.08997 * 109.47359 * 1.04407 * 21 20 19 50 50 H 1.09000 * 109.46684 * 121.04354 * 21 20 19 51 51 H 0.96992 * 120.00117 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1194 -2.0235 1.0955 6 6 1.6759 -2.7127 -0.0315 7 6 1.8069 -4.0893 -0.0556 8 6 2.3760 -4.7395 1.0303 9 7 2.7927 -4.0684 2.0801 10 6 2.6884 -2.7458 2.1496 11 6 3.1718 -2.0333 3.3513 12 8 3.0787 -0.8232 3.4190 13 7 3.7166 -2.7254 4.3715 14 6 3.9696 -4.1776 4.3863 15 6 3.9909 -4.5612 5.8870 16 6 4.6850 -3.3238 6.5150 17 6 4.1565 -2.1571 5.6541 18 1 3.3172 -1.6762 6.1565 19 6 5.2731 -1.1385 5.4162 20 7 5.6417 -0.5120 6.6883 21 6 4.8798 0.6353 7.1876 22 6 6.6984 -0.9989 7.4104 23 1 7.2863 -1.8175 7.0223 24 6 7.0141 -0.4401 8.6412 25 7 6.4421 0.6832 9.0203 26 14 8.2563 -1.2783 9.7564 27 1 8.7558 -2.5135 9.1008 28 1 9.3940 -0.3581 10.0099 29 1 7.6070 -1.6293 11.0451 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 1.2364 -2.1847 -0.8648 38 1 1.4687 -4.6536 -0.9121 39 1 2.4780 -5.8144 1.0121 40 1 4.9315 -4.3998 3.9243 41 1 3.1699 -4.7090 3.8703 42 1 4.5789 -5.4642 6.0511 43 1 2.9790 -4.6800 6.2743 44 1 5.7687 -3.4052 6.4306 45 1 4.3864 -3.2010 7.5561 46 1 4.9254 -0.3736 4.7218 47 1 6.1421 -1.6437 4.9948 48 1 5.5394 1.4985 7.2770 49 1 4.0723 0.8655 6.4926 50 1 4.4607 0.3955 8.1649 51 1 6.6624 1.0734 9.8805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733940775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:21 Heat of formation + Delta-G solvation = -7.992955 kcal Electronic energy + Delta-G solvation = -31917.247996 eV Core-core repulsion = 27818.054616 eV Total energy + Delta-G solvation = -4099.193381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07944 -40.75413 -39.46353 -38.51476 -37.15086 -34.28737 -33.85780 -33.26183 -32.30978 -31.21813 -30.41729 -28.25816 -28.05308 -26.77811 -25.99369 -24.87150 -23.72716 -22.85589 -22.09249 -21.83171 -20.48619 -19.17822 -18.91106 -18.42776 -17.80614 -17.35061 -16.74329 -16.71536 -16.27898 -15.91063 -15.67802 -15.48312 -15.36861 -15.12400 -14.98632 -14.67982 -14.33066 -14.18351 -14.01761 -13.80535 -13.62418 -13.46179 -13.43087 -13.22809 -13.16941 -12.85351 -12.80989 -12.75691 -12.67141 -12.28693 -12.07084 -12.00186 -11.97438 -11.87278 -11.75911 -11.57321 -11.50035 -11.03807 -10.76664 -10.64795 -10.32115 -9.74377 -9.40188 -8.88871 -7.72968 -5.16926 -0.32685 0.25284 1.47960 1.48915 1.59758 1.80611 1.94717 2.11612 2.53865 2.84996 3.16061 3.36148 3.55402 3.66429 3.71786 3.78829 3.85005 3.88901 3.93446 4.05963 4.10087 4.12788 4.15803 4.35894 4.45859 4.51629 4.56671 4.64124 4.74311 4.76345 4.76709 4.81913 4.87726 4.87900 4.96585 5.02825 5.08453 5.12351 5.16564 5.19758 5.22760 5.24245 5.43194 5.46382 5.50242 5.56124 5.65891 5.76959 6.28028 6.31312 6.60581 6.79159 7.15857 7.23123 7.86462 8.30571 9.27254 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003017 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.588871 B = 9278.162683 C =10821.113712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.059 3.941 3 C -0.148 4.148 4 O -0.303 6.303 5 C 0.126 3.874 6 C -0.174 4.174 7 C -0.085 4.085 8 C 0.053 3.947 9 N -0.430 5.430 10 C 0.009 3.991 11 C 0.566 3.434 12 O -0.562 6.562 13 N -0.598 5.598 14 C 0.103 3.897 15 C -0.126 4.126 16 C -0.103 4.103 17 C 0.126 3.874 18 H 0.036 0.964 19 C 0.157 3.843 20 N -0.619 5.619 21 C 0.193 3.807 22 C -0.242 4.242 23 H 0.083 0.917 24 C -0.066 4.066 25 N -0.950 5.950 26 Si 0.974 3.026 27 H -0.261 1.261 28 H -0.297 1.297 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.049 0.951 37 H 0.175 0.825 38 H 0.190 0.810 39 H 0.203 0.797 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.027 0.973 47 H 0.044 0.956 48 H 0.020 0.980 49 H 0.001 0.999 50 H 0.015 0.985 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 -14.296 -25.210 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 C -0.205 4.205 4 O -0.215 6.215 5 C 0.075 3.925 6 C -0.200 4.200 7 C -0.105 4.105 8 C -0.109 4.109 9 N -0.142 5.142 10 C -0.127 4.127 11 C 0.355 3.645 12 O -0.441 6.441 13 N -0.331 5.331 14 C -0.019 4.019 15 C -0.163 4.163 16 C -0.141 4.141 17 C 0.020 3.980 18 H 0.054 0.946 19 C 0.030 3.970 20 N -0.343 5.343 21 C 0.048 3.952 22 C -0.372 4.372 23 H 0.101 0.899 24 C -0.258 4.258 25 N -0.600 5.600 26 Si 0.802 3.198 27 H -0.185 1.185 28 H -0.224 1.224 29 H -0.218 1.218 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.192 0.808 38 H 0.207 0.793 39 H 0.219 0.781 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.020 0.980 50 H 0.033 0.967 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.576 -13.739 -24.206 30.968 hybrid contribution 0.311 1.006 0.477 1.156 sum -13.264 -12.733 -23.730 30.019 Atomic orbital electron populations 1.22360 0.93426 1.03371 1.03892 1.22926 0.95653 0.94174 0.86830 1.21880 1.01482 0.93506 1.03653 1.86487 1.79513 1.15537 1.39940 1.20253 0.93220 0.84557 0.94479 1.22160 1.03706 0.96476 0.97672 1.22747 0.94010 0.93421 1.00310 1.23555 0.96403 1.02360 0.88610 1.67750 1.14626 1.05000 1.26829 1.20270 1.06922 0.90583 0.94917 1.17983 0.78004 0.86025 0.82481 1.90803 1.58122 1.14658 1.80515 1.48539 1.59343 1.10709 1.14495 1.22836 1.03109 0.78805 0.97106 1.22900 1.01493 0.97808 0.94135 1.22386 1.00496 0.93157 0.98080 1.22200 0.96166 0.95974 0.83671 0.94559 1.20989 0.94983 0.94095 0.86940 1.44176 1.34347 1.34157 1.21643 1.20617 0.91567 0.89231 0.93794 1.19670 1.05680 1.12916 0.98885 0.89897 1.25685 1.02366 0.98048 0.99703 1.70458 1.48140 1.19948 1.21420 0.85076 0.77784 0.78144 0.78752 1.18527 1.22423 1.21847 0.93182 0.87924 0.91496 0.88547 0.93038 0.87216 0.93214 0.80756 0.79263 0.78061 0.91627 0.86018 0.87371 0.90610 0.91256 0.91834 0.95420 0.93745 0.96125 0.98024 0.96676 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.20 71.98 0.66 -1.75 16 2 C 0.06 1.09 2.85 30.60 0.09 1.18 16 3 C -0.15 -2.77 9.56 71.98 0.69 -2.08 16 4 O -0.30 -8.99 7.86 -68.62 -0.54 -9.53 16 5 C 0.13 3.27 6.62 22.93 0.15 3.42 16 6 C -0.17 -2.53 8.35 22.55 0.19 -2.34 16 7 C -0.09 -0.79 10.10 22.41 0.23 -0.57 16 8 C 0.05 0.70 11.17 84.89 0.95 1.65 16 9 N -0.43 -9.94 6.53 -184.64 -1.21 -11.15 16 10 C 0.01 0.27 6.73 41.93 0.28 0.55 16 11 C 0.57 22.50 7.65 86.78 0.66 23.17 16 12 O -0.56 -26.92 13.97 17.09 0.24 -26.68 16 13 N -0.60 -22.27 3.06 -791.45 -2.43 -24.70 16 14 C 0.10 2.86 6.10 86.85 0.53 3.39 16 15 C -0.13 -3.29 7.08 31.99 0.23 -3.06 16 16 C -0.10 -3.78 5.74 31.78 0.18 -3.60 16 17 C 0.13 5.38 3.15 45.34 0.14 5.52 16 18 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 19 C 0.16 7.79 5.05 86.38 0.44 8.22 16 20 N -0.62 -34.79 2.81 -726.94 -2.05 -36.84 16 21 C 0.19 11.21 8.99 127.77 1.15 12.36 16 22 C -0.24 -13.89 8.82 84.03 0.74 -13.15 16 23 H 0.08 4.51 7.43 -2.91 -0.02 4.49 16 24 C -0.07 -3.83 5.41 84.86 0.46 -3.37 16 25 N -0.95 -59.20 9.53 21.65 0.21 -59.00 16 26 Si 0.97 46.64 29.57 68.60 2.03 48.67 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 28 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.83 6.99 -2.38 -0.02 0.81 16 33 H 0.10 1.21 6.32 -2.39 -0.02 1.19 16 34 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.18 1.40 5.62 -2.91 -0.02 1.38 16 38 H 0.19 -0.04 8.06 -2.91 -0.02 -0.06 16 39 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 2.97 5.61 -2.38 -0.01 2.96 16 42 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 2.67 7.04 -2.39 -0.02 2.66 16 45 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.03 1.48 6.51 -2.39 -0.02 1.47 16 47 H 0.04 2.15 7.87 -2.39 -0.02 2.13 16 48 H 0.02 1.28 6.96 -2.39 -0.02 1.26 16 49 H 0.00 0.07 7.87 -2.39 -0.02 0.05 16 50 H 0.01 0.91 7.15 -2.39 -0.02 0.89 16 51 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -83.12 398.47 4.95 -78.17 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.92 Total: 11.53 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 7.77 Total: 29.53 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -5.47 Total: -131.68 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.30 Total: -36.21 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -83.12 4.95 -78.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733940775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.177 kcal (2) G-P(sol) polarization free energy of solvation -83.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds