Wall clock time and date at job start Wed Apr 1 2020 04:55:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.46711 * 2 1
4 4 O 1.42901 * 109.47296 * 120.00146 * 2 1 3
5 5 C 1.35647 * 117.00073 * 85.35605 * 4 2 1
6 6 C 1.39342 * 120.53955 * 354.59690 * 5 4 2
7 7 C 1.38309 * 118.43819 * 180.28568 * 6 5 4
8 8 C 1.38767 * 119.44208 * 359.72629 * 7 6 5
9 9 N 1.31377 * 121.06736 * 359.97438 * 8 7 6
10 10 C 1.32854 * 121.69861 * 0.02562 * 9 8 7
11 11 C 1.47826 * 119.78519 * 180.02562 * 10 9 8
12 12 O 1.21558 * 120.00302 * 179.97438 * 11 10 9
13 13 N 1.34781 * 119.99738 * 0.02562 * 11 10 9
14 14 C 1.47419 * 125.65159 * 4.13421 * 13 11 10
15 15 C 1.54903 * 104.83536 * 204.15039 * 14 13 11
16 16 C 1.55162 * 101.58293 * 322.99007 * 15 14 13
17 17 C 1.47025 * 125.64632 * 184.15835 * 13 11 10
18 18 H 1.08999 * 110.01260 * 59.42811 * 17 13 11
19 19 C 1.53002 * 109.88247 * 298.33558 * 17 13 11
20 20 N 1.46503 * 109.46852 * 176.18821 * 19 17 13
21 21 C 1.46497 * 119.99991 * 275.46919 * 20 19 17
22 22 C 1.36937 * 119.99751 * 95.47408 * 20 19 17
23 23 H 1.08000 * 120.00126 * 2.61189 * 22 20 19
24 24 C 1.38808 * 119.99753 * 182.60636 * 22 20 19
25 25 N 1.31624 * 120.00537 * 349.27162 * 24 22 20
26 26 Si 1.86801 * 119.99793 * 169.54178 * 24 22 20
27 27 H 1.48496 * 109.47167 * 0.02562 * 26 24 22
28 28 H 1.48503 * 109.47219 * 120.00412 * 26 24 22
29 29 H 1.48502 * 109.47325 * 240.00591 * 26 24 22
30 30 H 1.08995 * 109.47430 * 299.99655 * 1 2 3
31 31 H 1.09001 * 109.47129 * 59.99712 * 1 2 3
32 32 H 1.09006 * 109.46971 * 180.02562 * 1 2 3
33 33 H 1.08995 * 109.47430 * 240.00344 * 2 1 3
34 34 H 1.09005 * 109.46751 * 179.97438 * 3 2 1
35 35 H 1.08993 * 109.47238 * 299.99933 * 3 2 1
36 36 H 1.09007 * 109.47047 * 60.00460 * 3 2 1
37 37 H 1.08000 * 120.78505 * 0.02562 * 6 5 4
38 38 H 1.08001 * 120.27667 * 179.70724 * 7 6 5
39 39 H 1.07993 * 119.46545 * 179.97438 * 8 7 6
40 40 H 1.08999 * 110.36579 * 85.30957 * 14 13 11
41 41 H 1.09005 * 110.45535 * 323.03430 * 14 13 11
42 42 H 1.09000 * 111.00587 * 204.91628 * 15 14 13
43 43 H 1.09000 * 111.00651 * 81.06236 * 15 14 13
44 44 H 1.09003 * 110.72013 * 277.13920 * 16 15 14
45 45 H 1.08999 * 110.72387 * 153.86521 * 16 15 14
46 46 H 1.09003 * 109.47100 * 56.19126 * 19 17 13
47 47 H 1.08996 * 109.47219 * 296.19182 * 19 17 13
48 48 H 1.09001 * 109.47589 * 241.03819 * 21 20 19
49 49 H 1.08997 * 109.47359 * 1.04407 * 21 20 19
50 50 H 1.09000 * 109.46684 * 121.04354 * 21 20 19
51 51 H 0.96992 * 120.00117 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 8 2.0064 -0.6737 1.1668
5 6 2.1194 -2.0235 1.0955
6 6 1.6759 -2.7127 -0.0315
7 6 1.8069 -4.0893 -0.0556
8 6 2.3760 -4.7395 1.0303
9 7 2.7927 -4.0684 2.0801
10 6 2.6884 -2.7458 2.1496
11 6 3.1718 -2.0333 3.3513
12 8 3.0787 -0.8232 3.4190
13 7 3.7166 -2.7254 4.3715
14 6 3.9696 -4.1776 4.3863
15 6 3.9909 -4.5612 5.8870
16 6 4.6850 -3.3238 6.5150
17 6 4.1565 -2.1571 5.6541
18 1 3.3172 -1.6762 6.1565
19 6 5.2731 -1.1385 5.4162
20 7 5.6417 -0.5120 6.6883
21 6 4.8798 0.6353 7.1876
22 6 6.6984 -0.9989 7.4104
23 1 7.2863 -1.8175 7.0223
24 6 7.0141 -0.4401 8.6412
25 7 6.4421 0.6832 9.0203
26 14 8.2563 -1.2783 9.7564
27 1 8.7558 -2.5135 9.1008
28 1 9.3940 -0.3581 10.0099
29 1 7.6070 -1.6293 11.0451
30 1 -0.3634 0.5137 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0277 0.0005
33 1 1.8934 -0.5137 -0.8900
34 1 3.1300 1.4426 0.0005
35 1 1.6766 1.9564 -0.8899
36 1 1.6766 1.9564 0.8901
37 1 1.2364 -2.1847 -0.8648
38 1 1.4687 -4.6536 -0.9121
39 1 2.4780 -5.8144 1.0121
40 1 4.9315 -4.3998 3.9243
41 1 3.1699 -4.7090 3.8703
42 1 4.5789 -5.4642 6.0511
43 1 2.9790 -4.6800 6.2743
44 1 5.7687 -3.4052 6.4306
45 1 4.3864 -3.2010 7.5561
46 1 4.9254 -0.3736 4.7218
47 1 6.1421 -1.6437 4.9948
48 1 5.5394 1.4985 7.2770
49 1 4.0723 0.8655 6.4926
50 1 4.4607 0.3955 8.1649
51 1 6.6624 1.0734 9.8805
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733940775.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:21
Heat of formation + Delta-G solvation = -7.992955 kcal
Electronic energy + Delta-G solvation = -31917.247996 eV
Core-core repulsion = 27818.054616 eV
Total energy + Delta-G solvation = -4099.193381 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.07944 -40.75413 -39.46353 -38.51476 -37.15086 -34.28737 -33.85780 -33.26183
-32.30978 -31.21813 -30.41729 -28.25816 -28.05308 -26.77811 -25.99369 -24.87150
-23.72716 -22.85589 -22.09249 -21.83171 -20.48619 -19.17822 -18.91106 -18.42776
-17.80614 -17.35061 -16.74329 -16.71536 -16.27898 -15.91063 -15.67802 -15.48312
-15.36861 -15.12400 -14.98632 -14.67982 -14.33066 -14.18351 -14.01761 -13.80535
-13.62418 -13.46179 -13.43087 -13.22809 -13.16941 -12.85351 -12.80989 -12.75691
-12.67141 -12.28693 -12.07084 -12.00186 -11.97438 -11.87278 -11.75911 -11.57321
-11.50035 -11.03807 -10.76664 -10.64795 -10.32115 -9.74377 -9.40188 -8.88871
-7.72968 -5.16926 -0.32685 0.25284 1.47960 1.48915 1.59758 1.80611
1.94717 2.11612 2.53865 2.84996 3.16061 3.36148 3.55402 3.66429
3.71786 3.78829 3.85005 3.88901 3.93446 4.05963 4.10087 4.12788
4.15803 4.35894 4.45859 4.51629 4.56671 4.64124 4.74311 4.76345
4.76709 4.81913 4.87726 4.87900 4.96585 5.02825 5.08453 5.12351
5.16564 5.19758 5.22760 5.24245 5.43194 5.46382 5.50242 5.56124
5.65891 5.76959 6.28028 6.31312 6.60581 6.79159 7.15857 7.23123
7.86462 8.30571 9.27254
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014613 B = 0.003017 C = 0.002587
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1915.588871 B = 9278.162683 C =10821.113712
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.059 3.941
3 C -0.148 4.148
4 O -0.303 6.303
5 C 0.126 3.874
6 C -0.174 4.174
7 C -0.085 4.085
8 C 0.053 3.947
9 N -0.430 5.430
10 C 0.009 3.991
11 C 0.566 3.434
12 O -0.562 6.562
13 N -0.598 5.598
14 C 0.103 3.897
15 C -0.126 4.126
16 C -0.103 4.103
17 C 0.126 3.874
18 H 0.036 0.964
19 C 0.157 3.843
20 N -0.619 5.619
21 C 0.193 3.807
22 C -0.242 4.242
23 H 0.083 0.917
24 C -0.066 4.066
25 N -0.950 5.950
26 Si 0.974 3.026
27 H -0.261 1.261
28 H -0.297 1.297
29 H -0.292 1.292
30 H 0.049 0.951
31 H 0.102 0.898
32 H 0.066 0.934
33 H 0.097 0.903
34 H 0.050 0.950
35 H 0.109 0.891
36 H 0.049 0.951
37 H 0.175 0.825
38 H 0.190 0.810
39 H 0.203 0.797
40 H 0.065 0.935
41 H 0.122 0.878
42 H 0.108 0.892
43 H 0.075 0.925
44 H 0.069 0.931
45 H 0.063 0.937
46 H 0.027 0.973
47 H 0.044 0.956
48 H 0.020 0.980
49 H 0.001 0.999
50 H 0.015 0.985
51 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.956 -14.296 -25.210 32.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.004 3.996
3 C -0.205 4.205
4 O -0.215 6.215
5 C 0.075 3.925
6 C -0.200 4.200
7 C -0.105 4.105
8 C -0.109 4.109
9 N -0.142 5.142
10 C -0.127 4.127
11 C 0.355 3.645
12 O -0.441 6.441
13 N -0.331 5.331
14 C -0.019 4.019
15 C -0.163 4.163
16 C -0.141 4.141
17 C 0.020 3.980
18 H 0.054 0.946
19 C 0.030 3.970
20 N -0.343 5.343
21 C 0.048 3.952
22 C -0.372 4.372
23 H 0.101 0.899
24 C -0.258 4.258
25 N -0.600 5.600
26 Si 0.802 3.198
27 H -0.185 1.185
28 H -0.224 1.224
29 H -0.218 1.218
30 H 0.068 0.932
31 H 0.121 0.879
32 H 0.085 0.915
33 H 0.115 0.885
34 H 0.070 0.930
35 H 0.128 0.872
36 H 0.068 0.932
37 H 0.192 0.808
38 H 0.207 0.793
39 H 0.219 0.781
40 H 0.084 0.916
41 H 0.140 0.860
42 H 0.126 0.874
43 H 0.094 0.906
44 H 0.087 0.913
45 H 0.082 0.918
46 H 0.046 0.954
47 H 0.063 0.937
48 H 0.039 0.961
49 H 0.020 0.980
50 H 0.033 0.967
51 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -13.576 -13.739 -24.206 30.968
hybrid contribution 0.311 1.006 0.477 1.156
sum -13.264 -12.733 -23.730 30.019
Atomic orbital electron populations
1.22360 0.93426 1.03371 1.03892 1.22926 0.95653 0.94174 0.86830
1.21880 1.01482 0.93506 1.03653 1.86487 1.79513 1.15537 1.39940
1.20253 0.93220 0.84557 0.94479 1.22160 1.03706 0.96476 0.97672
1.22747 0.94010 0.93421 1.00310 1.23555 0.96403 1.02360 0.88610
1.67750 1.14626 1.05000 1.26829 1.20270 1.06922 0.90583 0.94917
1.17983 0.78004 0.86025 0.82481 1.90803 1.58122 1.14658 1.80515
1.48539 1.59343 1.10709 1.14495 1.22836 1.03109 0.78805 0.97106
1.22900 1.01493 0.97808 0.94135 1.22386 1.00496 0.93157 0.98080
1.22200 0.96166 0.95974 0.83671 0.94559 1.20989 0.94983 0.94095
0.86940 1.44176 1.34347 1.34157 1.21643 1.20617 0.91567 0.89231
0.93794 1.19670 1.05680 1.12916 0.98885 0.89897 1.25685 1.02366
0.98048 0.99703 1.70458 1.48140 1.19948 1.21420 0.85076 0.77784
0.78144 0.78752 1.18527 1.22423 1.21847 0.93182 0.87924 0.91496
0.88547 0.93038 0.87216 0.93214 0.80756 0.79263 0.78061 0.91627
0.86018 0.87371 0.90610 0.91256 0.91834 0.95420 0.93745 0.96125
0.98024 0.96676 0.94659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.42 9.20 71.98 0.66 -1.75 16
2 C 0.06 1.09 2.85 30.60 0.09 1.18 16
3 C -0.15 -2.77 9.56 71.98 0.69 -2.08 16
4 O -0.30 -8.99 7.86 -68.62 -0.54 -9.53 16
5 C 0.13 3.27 6.62 22.93 0.15 3.42 16
6 C -0.17 -2.53 8.35 22.55 0.19 -2.34 16
7 C -0.09 -0.79 10.10 22.41 0.23 -0.57 16
8 C 0.05 0.70 11.17 84.89 0.95 1.65 16
9 N -0.43 -9.94 6.53 -184.64 -1.21 -11.15 16
10 C 0.01 0.27 6.73 41.93 0.28 0.55 16
11 C 0.57 22.50 7.65 86.78 0.66 23.17 16
12 O -0.56 -26.92 13.97 17.09 0.24 -26.68 16
13 N -0.60 -22.27 3.06 -791.45 -2.43 -24.70 16
14 C 0.10 2.86 6.10 86.85 0.53 3.39 16
15 C -0.13 -3.29 7.08 31.99 0.23 -3.06 16
16 C -0.10 -3.78 5.74 31.78 0.18 -3.60 16
17 C 0.13 5.38 3.15 45.34 0.14 5.52 16
18 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16
19 C 0.16 7.79 5.05 86.38 0.44 8.22 16
20 N -0.62 -34.79 2.81 -726.94 -2.05 -36.84 16
21 C 0.19 11.21 8.99 127.77 1.15 12.36 16
22 C -0.24 -13.89 8.82 84.03 0.74 -13.15 16
23 H 0.08 4.51 7.43 -2.91 -0.02 4.49 16
24 C -0.07 -3.83 5.41 84.86 0.46 -3.37 16
25 N -0.95 -59.20 9.53 21.65 0.21 -59.00 16
26 Si 0.97 46.64 29.57 68.60 2.03 48.67 16
27 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16
28 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16
29 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16
30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.07 0.83 6.99 -2.38 -0.02 0.81 16
33 H 0.10 1.21 6.32 -2.39 -0.02 1.19 16
34 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16
35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16
37 H 0.18 1.40 5.62 -2.91 -0.02 1.38 16
38 H 0.19 -0.04 8.06 -2.91 -0.02 -0.06 16
39 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16
40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
41 H 0.12 2.97 5.61 -2.38 -0.01 2.96 16
42 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16
43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
44 H 0.07 2.67 7.04 -2.39 -0.02 2.66 16
45 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16
46 H 0.03 1.48 6.51 -2.39 -0.02 1.47 16
47 H 0.04 2.15 7.87 -2.39 -0.02 2.13 16
48 H 0.02 1.28 6.96 -2.39 -0.02 1.26 16
49 H 0.00 0.07 7.87 -2.39 -0.02 0.05 16
50 H 0.01 0.91 7.15 -2.39 -0.02 0.89 16
51 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16
Total: -1.00 -83.12 398.47 4.95 -78.17
By element:
Atomic # 1 Polarization: 10.60 SS G_CDS: 0.92 Total: 11.53 kcal
Atomic # 6 Polarization: 21.76 SS G_CDS: 7.77 Total: 29.53 kcal
Atomic # 7 Polarization: -126.21 SS G_CDS: -5.47 Total: -131.68 kcal
Atomic # 8 Polarization: -35.91 SS G_CDS: -0.30 Total: -36.21 kcal
Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal
Total: -83.12 4.95 -78.17 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733940775.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.177 kcal
(2) G-P(sol) polarization free energy of solvation -83.116 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds