Wall clock time and date at job start Wed Apr 1 2020 04:55:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.46910 * 2 1
4 4 O 1.42896 * 109.47323 * 120.00145 * 2 1 3
5 5 C 1.35649 * 117.00266 * 84.23155 * 4 2 1
6 6 C 1.39341 * 120.53697 * 357.64809 * 5 4 2
7 7 C 1.38309 * 118.43742 * 180.28503 * 6 5 4
8 8 C 1.38760 * 119.44560 * 359.73417 * 7 6 5
9 9 N 1.31376 * 121.06651 * 359.97438 * 8 7 6
10 10 C 1.32860 * 121.69646 * 0.02582 * 9 8 7
11 11 C 1.47831 * 119.78244 * 180.02562 * 10 9 8
12 12 O 1.21559 * 119.99481 * 222.50752 * 11 10 9
13 13 N 1.34775 * 120.00498 * 42.51087 * 11 10 9
14 14 C 1.46931 * 120.62924 * 356.12165 * 13 11 10
15 15 C 1.53189 * 108.77264 * 126.37207 * 14 13 11
16 16 C 1.53043 * 109.31488 * 54.63815 * 15 14 13
17 17 C 1.53045 * 109.53608 * 298.63353 * 16 15 14
18 18 H 1.09002 * 109.52362 * 301.39959 * 17 16 15
19 19 C 1.52994 * 109.49596 * 181.31413 * 17 16 15
20 20 N 1.46501 * 109.47301 * 175.16175 * 19 17 16
21 21 C 1.36934 * 120.00419 * 180.02562 * 20 19 17
22 22 H 1.08004 * 119.99865 * 0.02562 * 21 20 19
23 23 C 1.38812 * 119.99926 * 179.97438 * 21 20 19
24 24 N 1.31621 * 119.99668 * 180.02562 * 23 21 20
25 25 Si 1.86796 * 120.00248 * 0.02562 * 23 21 20
26 26 H 1.48503 * 109.47086 * 269.99817 * 25 23 21
27 27 H 1.48498 * 109.47064 * 29.99607 * 25 23 21
28 28 H 1.48498 * 109.47402 * 149.99556 * 25 23 21
29 29 C 1.46922 * 120.63151 * 176.10410 * 13 11 10
30 30 H 1.09002 * 109.47083 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.46923 * 299.99971 * 1 2 3
32 32 H 1.09000 * 109.47429 * 59.99556 * 1 2 3
33 33 H 1.08995 * 109.47201 * 240.00080 * 2 1 3
34 34 H 1.08996 * 109.46946 * 179.97438 * 3 2 1
35 35 H 1.08996 * 109.46761 * 300.00210 * 3 2 1
36 36 H 1.08996 * 109.46699 * 60.00360 * 3 2 1
37 37 H 1.07996 * 120.78419 * 0.02562 * 6 5 4
38 38 H 1.07995 * 120.28026 * 179.75401 * 7 6 5
39 39 H 1.08001 * 119.47158 * 179.97438 * 8 7 6
40 40 H 1.09000 * 109.58599 * 246.16364 * 14 13 11
41 41 H 1.09003 * 109.58576 * 6.44462 * 14 13 11
42 42 H 1.08998 * 109.49573 * 174.59105 * 15 14 13
43 43 H 1.09007 * 109.49729 * 294.65227 * 15 14 13
44 44 H 1.08993 * 109.45819 * 178.61233 * 16 15 14
45 45 H 1.08997 * 109.45954 * 58.64833 * 16 15 14
46 46 H 1.09001 * 109.47185 * 55.16561 * 19 17 16
47 47 H 1.08996 * 109.47626 * 295.15974 * 19 17 16
48 48 H 0.97006 * 119.99366 * 359.97438 * 20 19 17
49 49 H 0.96995 * 119.99961 * 180.02562 * 24 23 21
50 50 H 1.09009 * 109.58440 * 113.84040 * 29 13 11
51 51 H 1.08995 * 109.58921 * 353.41873 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 2.0972 -2.0256 1.1034
6 6 1.6906 -2.7097 -0.0405
7 6 1.7967 -4.0886 -0.0558
8 6 2.3053 -4.7461 1.0552
9 7 2.6881 -4.0799 2.1209
10 6 2.6056 -2.7553 2.1831
11 6 3.0490 -2.0484 3.4033
12 8 2.3864 -1.1322 3.8496
13 7 4.1879 -2.4197 4.0210
14 6 4.9550 -3.5784 3.5436
15 6 6.4031 -3.1435 3.2978
16 6 6.9615 -2.5009 4.5696
17 6 6.1374 -1.2598 4.9202
18 1 6.1693 -0.5547 4.0895
19 6 6.7164 -0.5995 6.1730
20 7 6.0005 0.6501 6.4417
21 6 6.3472 1.4196 7.5200
22 1 7.1487 1.1054 8.1723
23 6 5.6691 2.6039 7.7742
24 7 6.0027 3.3437 8.8104
25 14 4.2834 3.1475 6.6457
26 1 4.8356 3.9883 5.5533
27 1 3.6211 1.9525 6.0640
28 1 3.2919 3.9339 7.4227
29 6 4.6862 -1.6733 5.1843
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8899
33 1 1.8933 -0.5138 -0.8899
34 1 3.1299 1.4426 0.0005
35 1 1.6766 1.9563 -0.8899
36 1 1.6766 1.9563 0.8900
37 1 1.2979 -2.1761 -0.8933
38 1 1.4865 -4.6489 -0.9254
39 1 2.3880 -5.8228 1.0438
40 1 4.9328 -4.3665 4.2962
41 1 4.5194 -3.9475 2.6150
42 1 7.0048 -4.0138 3.0356
43 1 6.4327 -2.4215 2.4816
44 1 7.9997 -2.2128 4.4051
45 1 6.9088 -3.2156 5.3908
46 1 7.7736 -0.3859 6.0155
47 1 6.6044 -1.2724 7.0231
48 1 5.2814 0.9327 5.8552
49 1 5.5287 4.1710 8.9883
50 1 4.6421 -2.3062 6.0708
51 1 4.0749 -0.7839 5.3371
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001752811093.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:48
Heat of formation + Delta-G solvation = -17.174987 kcal
Electronic energy + Delta-G solvation = -31808.077863 eV
Core-core repulsion = 27708.486320 eV
Total energy + Delta-G solvation = -4099.591543 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.38723 -39.75434 -38.77038 -37.48597 -35.00954 -33.68706 -33.16179 -32.41108
-31.67446 -30.67800 -30.01984 -27.67650 -26.21125 -25.61136 -24.53264 -23.71041
-22.80192 -21.57615 -21.16559 -20.58110 -19.48327 -18.51966 -17.80024 -17.32430
-17.10806 -16.28963 -15.76906 -15.55884 -15.13902 -14.78268 -14.71390 -14.64272
-14.51493 -14.03573 -13.90147 -13.70861 -13.42683 -13.28432 -12.98887 -12.78733
-12.73681 -12.63944 -12.57163 -12.49498 -12.35779 -12.27082 -11.52836 -11.42196
-11.32186 -11.15628 -11.00680 -10.83601 -10.63473 -10.40350 -10.29082 -10.20371
-10.10909 -9.98862 -9.51901 -9.44836 -8.81569 -8.77875 -8.42566 -7.13413
-5.67985 -3.02991 0.44108 0.84145 2.67296 2.68339 2.98340 3.41636
3.49226 3.56312 3.59904 3.99363 4.17742 4.28594 4.35138 4.49930
4.58619 4.66148 4.70562 4.73062 4.81359 4.95920 5.01277 5.04559
5.17139 5.21483 5.28438 5.32303 5.40246 5.44355 5.49193 5.55941
5.63892 5.64407 5.67537 5.77096 5.78920 5.85875 5.89938 5.96322
5.99849 6.03507 6.13186 6.13922 6.40186 6.43944 6.65616 6.75327
6.85197 6.90915 7.40167 7.52862 8.08140 8.26754 8.51230 9.30684
10.03708 10.23349 11.50373
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010275 B = 0.003658 C = 0.002883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2724.409268 B = 7653.424437 C = 9709.893191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.072 3.928
3 C -0.151 4.151
4 O -0.278 6.278
5 C 0.138 3.862
6 C -0.176 4.176
7 C -0.112 4.112
8 C 0.052 3.948
9 N -0.415 5.415
10 C 0.053 3.947
11 C 0.575 3.425
12 O -0.515 6.515
13 N -0.595 5.595
14 C 0.103 3.897
15 C -0.136 4.136
16 C -0.111 4.111
17 C -0.111 4.111
18 H 0.072 0.928
19 C 0.165 3.835
20 N -0.757 5.757
21 C -0.243 4.243
22 H 0.090 0.910
23 C 0.005 3.995
24 N -0.936 5.936
25 Si 0.878 3.122
26 H -0.285 1.285
27 H -0.271 1.271
28 H -0.291 1.291
29 C 0.119 3.881
30 H 0.060 0.940
31 H 0.073 0.927
32 H 0.074 0.926
33 H 0.073 0.927
34 H 0.067 0.933
35 H 0.078 0.922
36 H 0.073 0.927
37 H 0.147 0.853
38 H 0.142 0.858
39 H 0.165 0.835
40 H 0.070 0.930
41 H 0.100 0.900
42 H 0.072 0.928
43 H 0.062 0.938
44 H 0.067 0.933
45 H 0.066 0.934
46 H 0.031 0.969
47 H 0.029 0.971
48 H 0.362 0.638
49 H 0.259 0.741
50 H 0.072 0.928
51 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.088 -18.278 -25.713 32.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C 0.016 3.984
3 C -0.208 4.208
4 O -0.188 6.188
5 C 0.087 3.913
6 C -0.202 4.202
7 C -0.132 4.132
8 C -0.108 4.108
9 N -0.127 5.127
10 C -0.086 4.086
11 C 0.360 3.640
12 O -0.389 6.389
13 N -0.327 5.327
14 C -0.019 4.019
15 C -0.174 4.174
16 C -0.149 4.149
17 C -0.131 4.131
18 H 0.091 0.909
19 C 0.038 3.962
20 N -0.403 5.403
21 C -0.372 4.372
22 H 0.108 0.892
23 C -0.190 4.190
24 N -0.584 5.584
25 Si 0.708 3.292
26 H -0.212 1.212
27 H -0.196 1.196
28 H -0.217 1.217
29 C -0.002 4.002
30 H 0.079 0.921
31 H 0.092 0.908
32 H 0.093 0.907
33 H 0.091 0.909
34 H 0.086 0.914
35 H 0.097 0.903
36 H 0.092 0.908
37 H 0.164 0.836
38 H 0.160 0.840
39 H 0.182 0.818
40 H 0.088 0.912
41 H 0.118 0.882
42 H 0.091 0.909
43 H 0.080 0.920
44 H 0.086 0.914
45 H 0.085 0.915
46 H 0.048 0.952
47 H 0.047 0.953
48 H 0.195 0.805
49 H 0.069 0.931
50 H 0.090 0.910
51 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -7.963 -17.943 -24.346 31.275
hybrid contribution -1.435 0.787 -1.764 2.406
sum -9.398 -17.156 -26.110 32.625
Atomic orbital electron populations
1.22390 0.94635 1.02997 1.03760 1.22613 0.94725 0.94298 0.86736
1.21864 1.02459 0.92936 1.03513 1.86375 1.79219 1.14519 1.38737
1.19936 0.93203 0.84495 0.93635 1.21769 1.04600 0.95598 0.98246
1.22167 0.97099 0.94008 0.99879 1.22755 0.98407 1.00691 0.88983
1.67805 1.12483 1.06041 1.26344 1.20601 1.03844 0.89409 0.94702
1.17623 0.81375 0.82767 0.82244 1.90860 1.54253 1.29358 1.64396
1.47969 1.23240 1.30485 1.31046 1.22036 0.91027 0.87399 1.01481
1.21962 0.95923 1.00856 0.98650 1.21509 0.99308 0.96925 0.97189
1.21749 0.94313 0.97045 0.99963 0.90918 1.20614 0.94936 0.87665
0.93018 1.42783 1.41374 1.23383 1.32759 1.19050 1.15173 1.00659
1.02350 0.89213 1.24642 0.99309 0.97310 0.97766 1.69705 1.43934
1.15476 1.29287 0.86624 0.83068 0.78812 0.80697 1.21177 1.19647
1.21718 1.21769 0.94916 0.97314 0.86237 0.92089 0.90777 0.90712
0.90941 0.91387 0.90277 0.90812 0.83568 0.84033 0.81755 0.91219
0.88237 0.90915 0.91968 0.91444 0.91505 0.95156 0.95332 0.80492
0.93145 0.91015 0.88491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.41 9.21 37.16 0.34 -1.07 16
2 C 0.07 0.66 2.85 -26.73 -0.08 0.59 16
3 C -0.15 -1.34 9.56 37.16 0.36 -0.98 16
4 O -0.28 -3.80 8.64 -33.49 -0.29 -4.09 16
5 C 0.14 1.71 6.57 -38.56 -0.25 1.46 16
6 C -0.18 -1.46 8.35 -39.15 -0.33 -1.79 16
7 C -0.11 -0.73 10.10 -39.36 -0.40 -1.13 16
8 C 0.05 0.41 11.17 -17.55 -0.20 0.21 16
9 N -0.41 -4.81 7.43 -9.71 -0.07 -4.88 16
10 C 0.05 0.75 5.93 -82.88 -0.49 0.26 16
11 C 0.57 10.06 7.23 -12.34 -0.09 9.97 16
12 O -0.51 -11.07 15.65 -9.53 -0.15 -11.22 16
13 N -0.59 -9.35 2.97 -173.88 -0.52 -9.87 16
14 C 0.10 1.24 6.03 -3.71 -0.02 1.22 16
15 C -0.14 -1.48 6.08 -26.61 -0.16 -1.64 16
16 C -0.11 -1.40 5.17 -26.69 -0.14 -1.53 16
17 C -0.11 -1.83 2.38 -90.50 -0.21 -2.04 16
18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
19 C 0.17 3.31 5.65 -4.04 -0.02 3.28 16
20 N -0.76 -19.04 5.18 -59.91 -0.31 -19.35 16
21 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16
22 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16
23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16
24 N -0.94 -30.50 13.97 55.49 0.78 -29.72 16
25 Si 0.88 23.71 27.73 -169.99 -4.71 19.00 16
26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16
27 H -0.27 -7.19 6.52 56.52 0.37 -6.82 16
28 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16
29 C 0.12 2.08 5.51 -3.71 -0.02 2.06 16
30 H 0.06 0.46 7.07 -51.93 -0.37 0.09 16
31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.07 0.49 6.24 -51.93 -0.32 0.17 16
34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
37 H 0.15 0.84 5.68 -52.49 -0.30 0.54 16
38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16
39 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16
40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
41 H 0.10 1.13 4.67 -51.93 -0.24 0.89 16
42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
48 H 0.36 9.17 4.76 -40.82 -0.19 8.98 16
49 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16
50 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16
51 H 0.10 2.05 6.23 -51.93 -0.32 1.72 16
LS Contribution 401.19 15.07 6.05 6.05
Total: -1.00 -37.39 401.19 -9.30 -46.70
By element:
Atomic # 1 Polarization: 13.87 SS G_CDS: -8.10 Total: 5.77 kcal
Atomic # 6 Polarization: 3.58 SS G_CDS: -1.97 Total: 1.61 kcal
Atomic # 7 Polarization: -63.70 SS G_CDS: -0.12 Total: -63.82 kcal
Atomic # 8 Polarization: -14.86 SS G_CDS: -0.44 Total: -15.30 kcal
Atomic # 14 Polarization: 23.71 SS G_CDS: -4.71 Total: 19.00 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -37.39 -9.30 -46.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752811093.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.523 kcal
(2) G-P(sol) polarization free energy of solvation -37.395 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.872 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds