Wall clock time and date at job start Wed Apr 1 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46910 * 2 1 4 4 O 1.42896 * 109.47323 * 120.00145 * 2 1 3 5 5 C 1.35649 * 117.00266 * 84.23155 * 4 2 1 6 6 C 1.39341 * 120.53697 * 357.64809 * 5 4 2 7 7 C 1.38309 * 118.43742 * 180.28503 * 6 5 4 8 8 C 1.38760 * 119.44560 * 359.73417 * 7 6 5 9 9 N 1.31376 * 121.06651 * 359.97438 * 8 7 6 10 10 C 1.32860 * 121.69646 * 0.02582 * 9 8 7 11 11 C 1.47831 * 119.78244 * 180.02562 * 10 9 8 12 12 O 1.21559 * 119.99481 * 222.50752 * 11 10 9 13 13 N 1.34775 * 120.00498 * 42.51087 * 11 10 9 14 14 C 1.46931 * 120.62924 * 356.12165 * 13 11 10 15 15 C 1.53189 * 108.77264 * 126.37207 * 14 13 11 16 16 C 1.53043 * 109.31488 * 54.63815 * 15 14 13 17 17 C 1.53045 * 109.53608 * 298.63353 * 16 15 14 18 18 H 1.09002 * 109.52362 * 301.39959 * 17 16 15 19 19 C 1.52994 * 109.49596 * 181.31413 * 17 16 15 20 20 N 1.46501 * 109.47301 * 175.16175 * 19 17 16 21 21 C 1.36934 * 120.00419 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99865 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99926 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99668 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00248 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47086 * 269.99817 * 25 23 21 27 27 H 1.48498 * 109.47064 * 29.99607 * 25 23 21 28 28 H 1.48498 * 109.47402 * 149.99556 * 25 23 21 29 29 C 1.46922 * 120.63151 * 176.10410 * 13 11 10 30 30 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46923 * 299.99971 * 1 2 3 32 32 H 1.09000 * 109.47429 * 59.99556 * 1 2 3 33 33 H 1.08995 * 109.47201 * 240.00080 * 2 1 3 34 34 H 1.08996 * 109.46946 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46761 * 300.00210 * 3 2 1 36 36 H 1.08996 * 109.46699 * 60.00360 * 3 2 1 37 37 H 1.07996 * 120.78419 * 0.02562 * 6 5 4 38 38 H 1.07995 * 120.28026 * 179.75401 * 7 6 5 39 39 H 1.08001 * 119.47158 * 179.97438 * 8 7 6 40 40 H 1.09000 * 109.58599 * 246.16364 * 14 13 11 41 41 H 1.09003 * 109.58576 * 6.44462 * 14 13 11 42 42 H 1.08998 * 109.49573 * 174.59105 * 15 14 13 43 43 H 1.09007 * 109.49729 * 294.65227 * 15 14 13 44 44 H 1.08993 * 109.45819 * 178.61233 * 16 15 14 45 45 H 1.08997 * 109.45954 * 58.64833 * 16 15 14 46 46 H 1.09001 * 109.47185 * 55.16561 * 19 17 16 47 47 H 1.08996 * 109.47626 * 295.15974 * 19 17 16 48 48 H 0.97006 * 119.99366 * 359.97438 * 20 19 17 49 49 H 0.96995 * 119.99961 * 180.02562 * 24 23 21 50 50 H 1.09009 * 109.58440 * 113.84040 * 29 13 11 51 51 H 1.08995 * 109.58921 * 353.41873 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0972 -2.0256 1.1034 6 6 1.6906 -2.7097 -0.0405 7 6 1.7967 -4.0886 -0.0558 8 6 2.3053 -4.7461 1.0552 9 7 2.6881 -4.0799 2.1209 10 6 2.6056 -2.7553 2.1831 11 6 3.0490 -2.0484 3.4033 12 8 2.3864 -1.1322 3.8496 13 7 4.1879 -2.4197 4.0210 14 6 4.9550 -3.5784 3.5436 15 6 6.4031 -3.1435 3.2978 16 6 6.9615 -2.5009 4.5696 17 6 6.1374 -1.2598 4.9202 18 1 6.1693 -0.5547 4.0895 19 6 6.7164 -0.5995 6.1730 20 7 6.0005 0.6501 6.4417 21 6 6.3472 1.4196 7.5200 22 1 7.1487 1.1054 8.1723 23 6 5.6691 2.6039 7.7742 24 7 6.0027 3.3437 8.8104 25 14 4.2834 3.1475 6.6457 26 1 4.8356 3.9883 5.5533 27 1 3.6211 1.9525 6.0640 28 1 3.2919 3.9339 7.4227 29 6 4.6862 -1.6733 5.1843 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.2979 -2.1761 -0.8933 38 1 1.4865 -4.6489 -0.9254 39 1 2.3880 -5.8228 1.0438 40 1 4.9328 -4.3665 4.2962 41 1 4.5194 -3.9475 2.6150 42 1 7.0048 -4.0138 3.0356 43 1 6.4327 -2.4215 2.4816 44 1 7.9997 -2.2128 4.4051 45 1 6.9088 -3.2156 5.3908 46 1 7.7736 -0.3859 6.0155 47 1 6.6044 -1.2724 7.0231 48 1 5.2814 0.9327 5.8552 49 1 5.5287 4.1710 8.9883 50 1 4.6421 -2.3062 6.0708 51 1 4.0749 -0.7839 5.3371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752811093.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:48 Heat of formation + Delta-G solvation = -17.174987 kcal Electronic energy + Delta-G solvation = -31808.077863 eV Core-core repulsion = 27708.486320 eV Total energy + Delta-G solvation = -4099.591543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38723 -39.75434 -38.77038 -37.48597 -35.00954 -33.68706 -33.16179 -32.41108 -31.67446 -30.67800 -30.01984 -27.67650 -26.21125 -25.61136 -24.53264 -23.71041 -22.80192 -21.57615 -21.16559 -20.58110 -19.48327 -18.51966 -17.80024 -17.32430 -17.10806 -16.28963 -15.76906 -15.55884 -15.13902 -14.78268 -14.71390 -14.64272 -14.51493 -14.03573 -13.90147 -13.70861 -13.42683 -13.28432 -12.98887 -12.78733 -12.73681 -12.63944 -12.57163 -12.49498 -12.35779 -12.27082 -11.52836 -11.42196 -11.32186 -11.15628 -11.00680 -10.83601 -10.63473 -10.40350 -10.29082 -10.20371 -10.10909 -9.98862 -9.51901 -9.44836 -8.81569 -8.77875 -8.42566 -7.13413 -5.67985 -3.02991 0.44108 0.84145 2.67296 2.68339 2.98340 3.41636 3.49226 3.56312 3.59904 3.99363 4.17742 4.28594 4.35138 4.49930 4.58619 4.66148 4.70562 4.73062 4.81359 4.95920 5.01277 5.04559 5.17139 5.21483 5.28438 5.32303 5.40246 5.44355 5.49193 5.55941 5.63892 5.64407 5.67537 5.77096 5.78920 5.85875 5.89938 5.96322 5.99849 6.03507 6.13186 6.13922 6.40186 6.43944 6.65616 6.75327 6.85197 6.90915 7.40167 7.52862 8.08140 8.26754 8.51230 9.30684 10.03708 10.23349 11.50373 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010275 B = 0.003658 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.409268 B = 7653.424437 C = 9709.893191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.278 6.278 5 C 0.138 3.862 6 C -0.176 4.176 7 C -0.112 4.112 8 C 0.052 3.948 9 N -0.415 5.415 10 C 0.053 3.947 11 C 0.575 3.425 12 O -0.515 6.515 13 N -0.595 5.595 14 C 0.103 3.897 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.111 4.111 18 H 0.072 0.928 19 C 0.165 3.835 20 N -0.757 5.757 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.005 3.995 24 N -0.936 5.936 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.271 1.271 28 H -0.291 1.291 29 C 0.119 3.881 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.029 0.971 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.072 0.928 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -18.278 -25.713 32.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.188 6.188 5 C 0.087 3.913 6 C -0.202 4.202 7 C -0.132 4.132 8 C -0.108 4.108 9 N -0.127 5.127 10 C -0.086 4.086 11 C 0.360 3.640 12 O -0.389 6.389 13 N -0.327 5.327 14 C -0.019 4.019 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.131 4.131 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.403 5.403 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.584 5.584 25 Si 0.708 3.292 26 H -0.212 1.212 27 H -0.196 1.196 28 H -0.217 1.217 29 C -0.002 4.002 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.195 0.805 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.963 -17.943 -24.346 31.275 hybrid contribution -1.435 0.787 -1.764 2.406 sum -9.398 -17.156 -26.110 32.625 Atomic orbital electron populations 1.22390 0.94635 1.02997 1.03760 1.22613 0.94725 0.94298 0.86736 1.21864 1.02459 0.92936 1.03513 1.86375 1.79219 1.14519 1.38737 1.19936 0.93203 0.84495 0.93635 1.21769 1.04600 0.95598 0.98246 1.22167 0.97099 0.94008 0.99879 1.22755 0.98407 1.00691 0.88983 1.67805 1.12483 1.06041 1.26344 1.20601 1.03844 0.89409 0.94702 1.17623 0.81375 0.82767 0.82244 1.90860 1.54253 1.29358 1.64396 1.47969 1.23240 1.30485 1.31046 1.22036 0.91027 0.87399 1.01481 1.21962 0.95923 1.00856 0.98650 1.21509 0.99308 0.96925 0.97189 1.21749 0.94313 0.97045 0.99963 0.90918 1.20614 0.94936 0.87665 0.93018 1.42783 1.41374 1.23383 1.32759 1.19050 1.15173 1.00659 1.02350 0.89213 1.24642 0.99309 0.97310 0.97766 1.69705 1.43934 1.15476 1.29287 0.86624 0.83068 0.78812 0.80697 1.21177 1.19647 1.21718 1.21769 0.94916 0.97314 0.86237 0.92089 0.90777 0.90712 0.90941 0.91387 0.90277 0.90812 0.83568 0.84033 0.81755 0.91219 0.88237 0.90915 0.91968 0.91444 0.91505 0.95156 0.95332 0.80492 0.93145 0.91015 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.21 37.16 0.34 -1.07 16 2 C 0.07 0.66 2.85 -26.73 -0.08 0.59 16 3 C -0.15 -1.34 9.56 37.16 0.36 -0.98 16 4 O -0.28 -3.80 8.64 -33.49 -0.29 -4.09 16 5 C 0.14 1.71 6.57 -38.56 -0.25 1.46 16 6 C -0.18 -1.46 8.35 -39.15 -0.33 -1.79 16 7 C -0.11 -0.73 10.10 -39.36 -0.40 -1.13 16 8 C 0.05 0.41 11.17 -17.55 -0.20 0.21 16 9 N -0.41 -4.81 7.43 -9.71 -0.07 -4.88 16 10 C 0.05 0.75 5.93 -82.88 -0.49 0.26 16 11 C 0.57 10.06 7.23 -12.34 -0.09 9.97 16 12 O -0.51 -11.07 15.65 -9.53 -0.15 -11.22 16 13 N -0.59 -9.35 2.97 -173.88 -0.52 -9.87 16 14 C 0.10 1.24 6.03 -3.71 -0.02 1.22 16 15 C -0.14 -1.48 6.08 -26.61 -0.16 -1.64 16 16 C -0.11 -1.40 5.17 -26.69 -0.14 -1.53 16 17 C -0.11 -1.83 2.38 -90.50 -0.21 -2.04 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.17 3.31 5.65 -4.04 -0.02 3.28 16 20 N -0.76 -19.04 5.18 -59.91 -0.31 -19.35 16 21 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 22 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.94 -30.50 13.97 55.49 0.78 -29.72 16 25 Si 0.88 23.71 27.73 -169.99 -4.71 19.00 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.27 -7.19 6.52 56.52 0.37 -6.82 16 28 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 29 C 0.12 2.08 5.51 -3.71 -0.02 2.06 16 30 H 0.06 0.46 7.07 -51.93 -0.37 0.09 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.49 6.24 -51.93 -0.32 0.17 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.15 0.84 5.68 -52.49 -0.30 0.54 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.13 4.67 -51.93 -0.24 0.89 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.36 9.17 4.76 -40.82 -0.19 8.98 16 49 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 50 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 51 H 0.10 2.05 6.23 -51.93 -0.32 1.72 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -37.39 401.19 -9.30 -46.70 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.10 Total: 5.77 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.97 Total: 1.61 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.12 Total: -63.82 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.44 Total: -15.30 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.71 Total: 19.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.39 -9.30 -46.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752811093.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.523 kcal (2) G-P(sol) polarization free energy of solvation -37.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds