Wall clock time and date at job start Wed Apr 1 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46910 * 2 1 4 4 O 1.42896 * 109.47323 * 120.00145 * 2 1 3 5 5 C 1.35649 * 117.00266 * 84.23155 * 4 2 1 6 6 C 1.39341 * 120.53697 * 357.64809 * 5 4 2 7 7 C 1.38309 * 118.43742 * 180.28503 * 6 5 4 8 8 C 1.38760 * 119.44560 * 359.73417 * 7 6 5 9 9 N 1.31376 * 121.06651 * 359.97438 * 8 7 6 10 10 C 1.32860 * 121.69646 * 0.02582 * 9 8 7 11 11 C 1.47831 * 119.78244 * 180.02562 * 10 9 8 12 12 O 1.21559 * 119.99481 * 222.50752 * 11 10 9 13 13 N 1.34775 * 120.00498 * 42.51087 * 11 10 9 14 14 C 1.46931 * 120.62924 * 356.12165 * 13 11 10 15 15 C 1.53189 * 108.77264 * 126.37207 * 14 13 11 16 16 C 1.53043 * 109.31488 * 54.63815 * 15 14 13 17 17 C 1.53045 * 109.53608 * 298.63353 * 16 15 14 18 18 H 1.09002 * 109.52362 * 301.39959 * 17 16 15 19 19 C 1.52994 * 109.49596 * 181.31413 * 17 16 15 20 20 N 1.46501 * 109.47301 * 175.16175 * 19 17 16 21 21 C 1.36934 * 120.00419 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99865 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99926 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99668 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00248 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47086 * 269.99817 * 25 23 21 27 27 H 1.48498 * 109.47064 * 29.99607 * 25 23 21 28 28 H 1.48498 * 109.47402 * 149.99556 * 25 23 21 29 29 C 1.46922 * 120.63151 * 176.10410 * 13 11 10 30 30 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46923 * 299.99971 * 1 2 3 32 32 H 1.09000 * 109.47429 * 59.99556 * 1 2 3 33 33 H 1.08995 * 109.47201 * 240.00080 * 2 1 3 34 34 H 1.08996 * 109.46946 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46761 * 300.00210 * 3 2 1 36 36 H 1.08996 * 109.46699 * 60.00360 * 3 2 1 37 37 H 1.07996 * 120.78419 * 0.02562 * 6 5 4 38 38 H 1.07995 * 120.28026 * 179.75401 * 7 6 5 39 39 H 1.08001 * 119.47158 * 179.97438 * 8 7 6 40 40 H 1.09000 * 109.58599 * 246.16364 * 14 13 11 41 41 H 1.09003 * 109.58576 * 6.44462 * 14 13 11 42 42 H 1.08998 * 109.49573 * 174.59105 * 15 14 13 43 43 H 1.09007 * 109.49729 * 294.65227 * 15 14 13 44 44 H 1.08993 * 109.45819 * 178.61233 * 16 15 14 45 45 H 1.08997 * 109.45954 * 58.64833 * 16 15 14 46 46 H 1.09001 * 109.47185 * 55.16561 * 19 17 16 47 47 H 1.08996 * 109.47626 * 295.15974 * 19 17 16 48 48 H 0.97006 * 119.99366 * 359.97438 * 20 19 17 49 49 H 0.96995 * 119.99961 * 180.02562 * 24 23 21 50 50 H 1.09009 * 109.58440 * 113.84040 * 29 13 11 51 51 H 1.08995 * 109.58921 * 353.41873 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0972 -2.0256 1.1034 6 6 1.6906 -2.7097 -0.0405 7 6 1.7967 -4.0886 -0.0558 8 6 2.3053 -4.7461 1.0552 9 7 2.6881 -4.0799 2.1209 10 6 2.6056 -2.7553 2.1831 11 6 3.0490 -2.0484 3.4033 12 8 2.3864 -1.1322 3.8496 13 7 4.1879 -2.4197 4.0210 14 6 4.9550 -3.5784 3.5436 15 6 6.4031 -3.1435 3.2978 16 6 6.9615 -2.5009 4.5696 17 6 6.1374 -1.2598 4.9202 18 1 6.1693 -0.5547 4.0895 19 6 6.7164 -0.5995 6.1730 20 7 6.0005 0.6501 6.4417 21 6 6.3472 1.4196 7.5200 22 1 7.1487 1.1054 8.1723 23 6 5.6691 2.6039 7.7742 24 7 6.0027 3.3437 8.8104 25 14 4.2834 3.1475 6.6457 26 1 4.8356 3.9883 5.5533 27 1 3.6211 1.9525 6.0640 28 1 3.2919 3.9339 7.4227 29 6 4.6862 -1.6733 5.1843 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.2979 -2.1761 -0.8933 38 1 1.4865 -4.6489 -0.9254 39 1 2.3880 -5.8228 1.0438 40 1 4.9328 -4.3665 4.2962 41 1 4.5194 -3.9475 2.6150 42 1 7.0048 -4.0138 3.0356 43 1 6.4327 -2.4215 2.4816 44 1 7.9997 -2.2128 4.4051 45 1 6.9088 -3.2156 5.3908 46 1 7.7736 -0.3859 6.0155 47 1 6.6044 -1.2724 7.0231 48 1 5.2814 0.9327 5.8552 49 1 5.5287 4.1710 8.9883 50 1 4.6421 -2.3062 6.0708 51 1 4.0749 -0.7839 5.3371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752811093.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:47 Heat of formation + Delta-G solvation = -42.404067 kcal Electronic energy + Delta-G solvation = -31809.171878 eV Core-core repulsion = 27708.486320 eV Total energy + Delta-G solvation = -4100.685558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.23171 -40.85670 -39.55836 -38.82154 -36.77145 -34.60334 -34.37842 -33.46942 -33.17814 -31.88820 -31.29640 -28.33190 -27.65791 -26.93084 -25.30108 -24.67974 -24.43630 -22.67922 -22.25372 -21.81549 -20.61645 -19.71156 -19.27249 -18.60848 -17.95877 -17.36113 -16.71356 -16.64620 -16.45043 -16.21552 -15.86938 -15.69598 -15.46645 -15.39897 -15.06544 -14.94577 -14.60893 -14.38180 -14.24458 -14.05566 -13.95391 -13.81547 -13.55113 -13.40611 -13.30109 -13.24778 -13.01263 -12.91052 -12.68739 -12.29633 -12.11245 -12.04758 -11.94389 -11.90730 -11.79377 -11.57868 -11.43133 -11.38878 -11.05358 -10.79976 -10.41313 -9.76297 -9.48636 -9.33917 -8.09072 -5.40369 -0.30643 0.18303 1.28794 1.32725 1.40918 1.55610 1.84213 2.01086 2.40441 2.64844 3.10918 3.22941 3.49590 3.52926 3.66013 3.72739 3.82409 3.84996 3.87317 3.91447 3.99616 4.06867 4.08152 4.12221 4.27882 4.37038 4.46848 4.57924 4.61359 4.68095 4.70169 4.71890 4.75492 4.76818 4.87436 4.90251 4.92076 4.99341 5.00230 5.07498 5.13919 5.16572 5.17212 5.27858 5.42927 5.44823 5.53352 5.71039 6.16446 6.19524 6.32458 6.71162 7.01696 7.05065 7.79341 7.96269 9.12647 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010275 B = 0.003658 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.409268 B = 7653.424437 C = 9709.893191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 C -0.152 4.152 4 O -0.319 6.319 5 C 0.119 3.881 6 C -0.170 4.170 7 C -0.087 4.087 8 C 0.055 3.945 9 N -0.432 5.432 10 C 0.013 3.987 11 C 0.564 3.436 12 O -0.576 6.576 13 N -0.594 5.594 14 C 0.100 3.900 15 C -0.127 4.127 16 C -0.105 4.105 17 C -0.097 4.097 18 H 0.057 0.943 19 C 0.162 3.838 20 N -0.763 5.763 21 C -0.229 4.229 22 H 0.067 0.933 23 C -0.054 4.054 24 N -0.978 5.978 25 Si 0.941 3.059 26 H -0.276 1.276 27 H -0.273 1.273 28 H -0.290 1.290 29 C 0.122 3.878 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.045 0.955 37 H 0.175 0.825 38 H 0.191 0.809 39 H 0.204 0.796 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.033 0.967 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.076 0.924 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 -21.854 -30.154 38.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.009 3.991 3 C -0.209 4.209 4 O -0.232 6.232 5 C 0.069 3.931 6 C -0.196 4.196 7 C -0.106 4.106 8 C -0.107 4.107 9 N -0.144 5.144 10 C -0.123 4.123 11 C 0.352 3.648 12 O -0.455 6.455 13 N -0.325 5.325 14 C -0.021 4.021 15 C -0.165 4.165 16 C -0.143 4.143 17 C -0.117 4.117 18 H 0.076 0.924 19 C 0.035 3.965 20 N -0.409 5.409 21 C -0.360 4.360 22 H 0.085 0.915 23 C -0.246 4.246 24 N -0.629 5.629 25 Si 0.769 3.231 26 H -0.202 1.202 27 H -0.199 1.199 28 H -0.216 1.216 29 C -0.001 4.001 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.220 0.780 40 H 0.100 0.900 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.193 0.807 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.265 -21.569 -28.815 36.930 hybrid contribution -1.311 1.726 -0.451 2.214 sum -9.576 -19.843 -29.266 36.632 Atomic orbital electron populations 1.22369 0.93719 1.03349 1.03821 1.22912 0.95500 0.94040 0.86666 1.21920 1.01744 0.93458 1.03732 1.86341 1.79911 1.15771 1.41135 1.20190 0.93898 0.84258 0.94759 1.22142 1.03549 0.96564 0.97389 1.22734 0.93970 0.93276 1.00631 1.23535 0.96658 1.02306 0.88151 1.67706 1.13645 1.04823 1.28242 1.20093 1.07498 0.90620 0.94090 1.18361 0.81060 0.82280 0.83121 1.90798 1.56135 1.32248 1.66330 1.48095 1.23214 1.31005 1.30198 1.22313 0.91259 0.86196 1.02307 1.21938 0.95389 1.01902 0.97228 1.21506 0.99144 0.95029 0.98635 1.21606 0.94164 0.98491 0.97437 0.92408 1.20838 0.94873 0.85814 0.94936 1.42898 1.41729 1.24693 1.31537 1.19100 1.13668 1.00671 1.02564 0.91492 1.25297 1.01998 0.97893 0.99422 1.69837 1.45625 1.16217 1.31256 0.85627 0.80254 0.78207 0.78993 1.20177 1.19901 1.21623 1.21526 0.94845 0.96050 0.87631 0.91552 0.93512 0.87770 0.87934 0.92529 0.87028 0.93538 0.80746 0.79169 0.77966 0.89956 0.87094 0.87168 0.92787 0.90083 0.90201 0.94426 0.94874 0.80711 0.93220 0.90625 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 9.21 71.98 0.66 -1.88 16 2 C 0.06 1.12 2.85 30.60 0.09 1.21 16 3 C -0.15 -2.73 9.56 71.98 0.69 -2.04 16 4 O -0.32 -9.09 8.64 -75.45 -0.65 -9.75 16 5 C 0.12 2.90 6.57 22.93 0.15 3.06 16 6 C -0.17 -2.23 8.35 22.55 0.19 -2.05 16 7 C -0.09 -0.67 10.10 22.41 0.23 -0.44 16 8 C 0.06 0.63 11.17 84.89 0.95 1.58 16 9 N -0.43 -9.20 7.43 -184.63 -1.37 -10.57 16 10 C 0.01 0.36 5.93 41.93 0.25 0.61 16 11 C 0.56 20.96 7.23 86.78 0.63 21.59 16 12 O -0.58 -27.14 15.65 10.29 0.16 -26.98 16 13 N -0.59 -19.24 2.97 -822.32 -2.44 -21.68 16 14 C 0.10 2.25 6.03 86.36 0.52 2.77 16 15 C -0.13 -2.42 6.08 30.67 0.19 -2.23 16 16 C -0.11 -2.42 5.17 30.62 0.16 -2.26 16 17 C -0.10 -3.23 2.38 -10.72 -0.03 -3.26 16 18 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 19 C 0.16 6.54 5.65 86.38 0.49 7.03 16 20 N -0.76 -39.54 5.18 -343.46 -1.78 -41.32 16 21 C -0.23 -13.97 10.47 84.03 0.88 -13.09 16 22 H 0.07 4.33 8.06 -2.91 -0.02 4.31 16 23 C -0.05 -3.43 5.50 84.86 0.47 -2.96 16 24 N -0.98 -65.71 13.97 21.65 0.30 -65.41 16 25 Si 0.94 51.20 27.73 68.60 1.90 53.10 16 26 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.27 -14.84 6.52 99.48 0.65 -14.20 16 28 H -0.29 -15.63 7.11 99.48 0.71 -14.93 16 29 C 0.12 4.48 5.51 86.36 0.48 4.95 16 30 H 0.07 0.87 7.07 -2.39 -0.02 0.86 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.12 6.24 -2.39 -0.01 1.10 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.18 1.19 5.68 -2.91 -0.02 1.17 16 38 H 0.19 -0.32 8.06 -2.91 -0.02 -0.34 16 39 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 2.31 4.67 -2.39 -0.01 2.30 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.36 18.96 4.76 -92.70 -0.44 18.52 16 49 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 50 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 51 H 0.05 2.37 6.23 -2.39 -0.01 2.35 16 Total: -1.00 -89.79 401.19 3.53 -86.26 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.43 Total: 23.77 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.98 Total: 12.58 kcal Atomic # 7 Polarization: -133.69 SS G_CDS: -5.29 Total: -138.98 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.49 Total: -36.72 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.90 Total: 53.10 kcal Total: -89.79 3.53 -86.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752811093.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.855 kcal (2) G-P(sol) polarization free energy of solvation -89.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds