Wall clock time and date at job start Wed Apr 1 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47223 * 2 1 4 4 C 1.53006 * 109.47169 * 240.00250 * 2 1 3 5 5 C 1.52997 * 109.47169 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47159 * 59.99719 * 5 4 2 7 7 C 1.52996 * 109.47044 * 299.99903 * 6 5 4 8 8 C 1.52994 * 109.47526 * 120.00059 * 2 1 3 9 9 C 1.53006 * 109.47053 * 300.00262 * 8 2 1 10 10 N 1.46500 * 109.46831 * 174.31504 * 9 8 2 11 11 C 1.36940 * 119.99507 * 184.93447 * 10 9 8 12 12 H 1.08001 * 120.00007 * 0.02562 * 11 10 9 13 13 C 1.38816 * 119.99815 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99974 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99952 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47259 * 59.99687 * 15 13 11 17 17 H 1.48500 * 109.47196 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47086 * 300.00130 * 15 13 11 19 19 N 1.46502 * 109.46964 * 59.99528 * 8 2 1 20 20 C 1.34773 * 120.00536 * 287.99224 * 19 8 2 21 21 O 1.21647 * 119.99600 * 2.37147 * 20 19 8 22 22 C 1.47087 * 120.00272 * 182.36985 * 20 19 8 23 23 C 1.39340 * 120.58129 * 173.61050 * 22 20 19 24 24 C 1.39470 * 118.95253 * 180.02562 * 23 22 20 25 25 C 1.35761 * 120.13206 * 359.97438 * 24 23 22 26 26 N 1.35427 * 121.23044 * 359.97438 * 25 24 23 27 27 C 1.46505 * 119.47176 * 180.02562 * 26 25 24 28 28 C 1.34655 * 121.06063 * 0.02562 * 26 25 24 29 29 O 1.21880 * 120.10681 * 179.97438 * 28 26 25 30 30 H 1.08995 * 109.47055 * 293.50936 * 1 2 3 31 31 H 1.08998 * 109.47201 * 53.50450 * 1 2 3 32 32 H 1.08993 * 109.47282 * 173.50910 * 1 2 3 33 33 H 1.09002 * 109.47179 * 59.99799 * 4 2 1 34 34 H 1.08997 * 109.46843 * 299.99982 * 4 2 1 35 35 H 1.08997 * 109.47223 * 299.99750 * 5 4 2 36 36 H 1.08999 * 109.47177 * 179.97438 * 5 4 2 37 37 H 1.08996 * 109.46820 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.46718 * 59.99910 * 6 5 4 39 39 H 1.08997 * 109.47215 * 299.99893 * 7 6 5 40 40 H 1.09002 * 109.46914 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.46525 * 294.31380 * 9 8 2 42 42 H 1.08999 * 109.47191 * 54.31481 * 9 8 2 43 43 H 0.96991 * 120.00571 * 4.94059 * 10 9 8 44 44 H 0.97000 * 120.00223 * 179.97438 * 14 13 11 45 45 H 0.96999 * 119.99912 * 107.98828 * 19 8 2 46 46 H 1.07998 * 120.52736 * 359.97438 * 23 22 20 47 47 H 1.08004 * 119.93331 * 180.02562 * 24 23 22 48 48 H 1.08002 * 119.38127 * 180.27748 * 25 24 23 49 49 H 1.09003 * 109.47071 * 359.97438 * 27 26 25 50 50 H 1.08997 * 109.47196 * 119.99807 * 27 26 25 51 51 H 1.09003 * 109.46912 * 240.00265 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2495 8 6 2.0401 -0.7212 1.2492 9 6 1.5300 0.0000 2.4985 10 7 1.9036 -0.7651 3.6906 11 6 1.4662 -0.3656 4.9253 12 1 0.8456 0.5132 5.0201 13 6 1.8197 -1.0909 6.0549 14 7 2.5756 -2.1621 5.9394 15 14 1.2225 -0.5464 7.7391 16 1 -0.2624 -0.5476 7.7621 17 1 1.7338 -1.4827 8.7721 18 1 1.7208 0.8236 8.0219 19 7 1.5517 -2.1024 1.2492 20 6 0.2507 -2.3573 1.4921 21 8 -0.5264 -1.4382 1.6686 22 6 -0.2294 -3.7466 1.5438 23 6 -1.5397 -4.0302 1.9237 24 6 -1.9590 -5.3598 1.9614 25 6 -1.0975 -6.3557 1.6311 26 7 0.1770 -6.0873 1.2600 27 6 1.0739 -7.1919 0.9109 28 6 0.6331 -4.8215 1.2066 29 8 1.7836 -4.5999 0.8707 30 1 -0.3633 0.4099 0.9423 31 1 -0.3633 0.6112 -0.8261 32 1 -0.3633 -1.0210 -0.1162 33 1 1.6766 -0.2074 -2.1393 34 1 1.6767 -1.7489 -1.2493 35 1 3.9337 0.3057 -1.2488 36 1 3.9333 -1.2360 -2.1388 37 1 5.1694 -1.4442 0.0002 38 1 3.7157 -2.4710 0.0000 39 1 3.9332 0.3054 1.2497 40 1 3.9329 -1.2360 2.1395 41 1 1.9741 0.9941 2.5507 42 1 0.4448 0.0889 2.4491 43 1 2.4607 -1.5545 3.6055 44 1 2.8229 -2.6687 6.7287 45 1 2.1646 -2.8336 1.0743 46 1 -2.2196 -3.2330 2.1856 47 1 -2.9713 -5.5976 2.2532 48 1 -1.4363 -7.3808 1.6602 49 1 0.5411 -8.1377 1.0099 50 1 1.4145 -7.0723 -0.1175 51 1 1.9334 -7.1877 1.5812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753535034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:06 Heat of formation + Delta-G solvation = -28.642102 kcal Electronic energy + Delta-G solvation = -33635.597078 eV Core-core repulsion = 29535.508283 eV Total energy + Delta-G solvation = -4100.088795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.58966 -41.59804 -38.81954 -38.19005 -36.38104 -35.42782 -34.42741 -33.52323 -32.92978 -31.28634 -30.53113 -28.58042 -27.75830 -26.52553 -25.78293 -24.70737 -23.66628 -22.42638 -22.31448 -21.58739 -19.99715 -19.15856 -18.98078 -18.36330 -17.85766 -17.20711 -16.96360 -16.69128 -16.63161 -16.06541 -15.64539 -15.50078 -15.28238 -15.25188 -14.85625 -14.76634 -14.69060 -14.17662 -14.00580 -13.76224 -13.47632 -13.40605 -13.28514 -13.05417 -12.94742 -12.84864 -12.80581 -12.70586 -12.62672 -12.49173 -12.29116 -12.11297 -11.86832 -11.81415 -11.40703 -11.14626 -11.03834 -11.02639 -10.87550 -10.70482 -10.30256 -9.43913 -9.00646 -8.86974 -7.91425 -5.17677 -0.45631 0.82808 1.41225 1.46083 1.51989 1.58244 1.97044 2.53824 2.60339 2.91706 3.40097 3.58488 3.72767 3.77172 3.80410 3.85170 4.03225 4.07736 4.10934 4.19401 4.23278 4.37218 4.38939 4.43055 4.50102 4.54330 4.57836 4.71206 4.76439 4.79651 4.90399 4.91389 4.94876 5.01243 5.03547 5.10709 5.17531 5.20864 5.26026 5.29567 5.34016 5.40245 5.43719 5.49253 5.54216 5.56581 5.78045 5.93036 5.98420 6.29796 6.76998 7.07412 7.35236 7.66452 8.13839 8.40338 9.31887 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007428 B = 0.005684 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.697433 B = 4924.909736 C = 6995.641107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.102 4.102 5 C -0.109 4.109 6 C -0.114 4.114 7 C -0.114 4.114 8 C 0.179 3.821 9 C 0.134 3.866 10 N -0.727 5.727 11 C -0.236 4.236 12 H 0.064 0.936 13 C -0.077 4.077 14 N -0.969 5.969 15 Si 0.974 3.026 16 H -0.282 1.282 17 H -0.291 1.291 18 H -0.279 1.279 19 N -0.694 5.694 20 C 0.564 3.436 21 O -0.560 6.560 22 C -0.321 4.321 23 C 0.058 3.942 24 C -0.245 4.245 25 C 0.179 3.821 26 N -0.491 5.491 27 C 0.055 3.945 28 C 0.516 3.484 29 O -0.579 6.579 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.008 0.992 42 H 0.051 0.949 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.408 0.592 46 H 0.137 0.863 47 H 0.193 0.807 48 H 0.234 0.766 49 H 0.144 0.856 50 H 0.081 0.919 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -13.012 -17.308 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.152 4.152 7 C -0.152 4.152 8 C 0.092 3.908 9 C 0.007 3.993 10 N -0.369 5.369 11 C -0.368 4.368 12 H 0.082 0.918 13 C -0.269 4.269 14 N -0.621 5.621 15 Si 0.802 3.198 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.205 1.205 19 N -0.354 5.354 20 C 0.353 3.647 21 O -0.442 6.442 22 C -0.328 4.328 23 C 0.034 3.966 24 C -0.267 4.267 25 C 0.049 3.951 26 N -0.197 5.197 27 C -0.085 4.085 28 C 0.320 3.680 29 O -0.465 6.465 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.203 0.797 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.155 0.845 47 H 0.210 0.790 48 H 0.250 0.750 49 H 0.162 0.838 50 H 0.100 0.900 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.551 -12.207 -17.320 22.179 hybrid contribution 0.335 0.024 1.462 1.500 sum -6.216 -12.183 -15.858 20.942 Atomic orbital electron populations 1.22171 0.94534 1.01363 1.00250 1.21463 0.96311 0.99201 0.93848 0.90195 1.21481 0.96112 0.99749 0.96639 1.21503 0.94789 1.01208 0.97162 1.21515 1.00812 0.98768 0.94082 1.21680 0.93173 1.01909 0.98412 1.20517 0.93740 0.82254 0.94302 1.21367 0.99218 0.92834 0.85915 1.42303 1.61016 1.31827 1.01776 1.19540 1.23982 1.07471 0.85776 0.91816 1.25495 1.01805 0.98272 1.01293 1.69846 1.43064 1.20310 1.28851 0.85209 0.77725 0.77206 0.79613 1.20857 1.21691 1.20476 1.46344 1.09473 1.08985 1.70585 1.17631 0.82836 0.87688 0.76498 1.90729 1.56938 1.45113 1.51429 1.21152 0.97811 0.93666 1.20174 1.22244 0.92520 0.99236 0.82631 1.21148 1.03847 0.89817 1.11846 1.23278 0.80990 1.03824 0.87025 1.45470 1.12986 1.08603 1.52640 1.22525 0.94870 0.88324 1.02736 1.17019 0.87689 0.83233 0.80048 1.90559 1.19762 1.82911 1.53279 0.93115 0.93788 0.93256 0.90481 0.93718 0.90747 0.90389 0.90495 0.93256 0.90132 0.94076 0.97441 0.93138 0.79717 0.94285 0.74650 0.84498 0.78982 0.74955 0.83773 0.89996 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.27 71.98 0.52 -4.06 16 2 C -0.09 -2.99 2.07 -10.79 -0.02 -3.01 16 3 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.10 -2.87 5.05 30.60 0.15 -2.72 16 5 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 6 C -0.11 -3.42 5.75 30.59 0.18 -3.25 16 7 C -0.11 -4.24 4.71 30.57 0.14 -4.09 16 8 C 0.18 7.20 0.32 3.58 0.00 7.20 16 9 C 0.13 6.60 4.43 86.38 0.38 6.99 16 10 N -0.73 -42.24 5.11 -343.43 -1.75 -44.00 16 11 C -0.24 -14.73 9.99 84.03 0.84 -13.89 16 12 H 0.06 3.92 7.83 -2.91 -0.02 3.90 16 13 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 14 N -0.97 -63.45 13.06 21.65 0.28 -63.16 16 15 Si 0.97 49.83 29.55 68.60 2.03 51.86 16 16 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 17 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 18 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 19 N -0.69 -29.27 3.54 -426.55 -1.51 -30.78 16 20 C 0.56 24.60 5.94 86.57 0.51 25.12 16 21 O -0.56 -26.20 9.63 -4.18 -0.04 -26.24 16 22 C -0.32 -11.77 5.92 -19.79 -0.12 -11.88 16 23 C 0.06 1.63 9.70 22.83 0.22 1.85 16 24 C -0.24 -3.88 9.99 21.99 0.22 -3.66 16 25 C 0.18 2.07 10.28 83.56 0.86 2.93 16 26 N -0.49 -9.88 2.98 -673.18 -2.00 -11.89 16 27 C 0.06 0.69 10.04 127.77 1.28 1.97 16 28 C 0.52 17.07 7.44 85.16 0.63 17.71 16 29 O -0.58 -22.35 13.71 -4.93 -0.07 -22.42 16 30 H 0.05 2.13 5.17 -2.39 -0.01 2.11 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.93 5.28 -2.39 -0.01 1.92 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.42 7.60 -2.39 -0.02 1.40 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 1.64 6.64 -2.38 -0.02 1.63 16 39 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.04 1.81 7.12 -2.39 -0.02 1.79 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.05 2.70 4.28 -2.39 -0.01 2.69 16 43 H 0.37 22.90 6.47 -92.71 -0.60 22.30 16 44 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.41 17.44 3.62 -92.73 -0.34 17.10 16 46 H 0.14 4.04 7.71 -2.91 -0.02 4.02 16 47 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 48 H 0.23 -0.46 7.79 -2.91 -0.02 -0.48 16 49 H 0.14 0.17 7.70 -2.39 -0.02 0.15 16 50 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -88.96 384.20 3.42 -85.54 By element: Atomic # 1 Polarization: 50.71 SS G_CDS: 0.02 Total: 50.73 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.46 Total: 10.36 kcal Atomic # 7 Polarization: -144.84 SS G_CDS: -4.98 Total: -149.83 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.11 Total: -48.66 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Total: -88.96 3.42 -85.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753535034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.897 kcal (2) G-P(sol) polarization free energy of solvation -88.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds