Wall clock time and date at job start Wed Apr 1 2020 05:28:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 109.47317 * 2 1
4 4 C 1.53002 * 109.46983 * 120.00156 * 2 1 3
5 5 C 1.53005 * 109.46983 * 180.02562 * 4 2 1
6 6 C 1.52998 * 109.47057 * 299.99724 * 5 4 2
7 7 C 1.53004 * 109.47040 * 59.99897 * 6 5 4
8 8 C 1.52997 * 109.47313 * 300.00199 * 7 6 5
9 9 C 1.53004 * 109.47313 * 179.97438 * 8 7 6
10 10 N 1.46495 * 109.46882 * 65.13771 * 9 8 7
11 11 C 1.36935 * 120.00159 * 185.00414 * 10 9 8
12 12 H 1.08006 * 119.99936 * 4.99518 * 11 10 9
13 13 C 1.38810 * 120.00882 * 184.99439 * 11 10 9
14 14 N 1.31615 * 120.00591 * 184.89357 * 13 11 10
15 15 Si 1.86802 * 119.99524 * 4.89505 * 13 11 10
16 16 H 1.48504 * 109.47160 * 94.73342 * 15 13 11
17 17 H 1.48495 * 109.47632 * 214.73343 * 15 13 11
18 18 H 1.48500 * 109.47113 * 334.73767 * 15 13 11
19 19 N 1.46506 * 109.46834 * 300.00007 * 8 7 6
20 20 C 1.34783 * 119.99766 * 189.30082 * 19 8 7
21 21 O 1.21612 * 119.99974 * 6.03352 * 20 19 8
22 22 C 1.47421 * 119.99933 * 186.03414 * 20 19 8
23 23 N 1.36068 * 126.44522 * 354.53443 * 22 20 19
24 24 C 1.29939 * 108.47265 * 179.82706 * 23 22 20
25 25 O 1.34046 * 109.24480 * 0.44154 * 24 23 22
26 26 C 1.34264 * 108.22607 * 359.72537 * 25 24 23
27 27 C 1.50702 * 126.52266 * 180.02562 * 26 25 24
28 28 C 1.52996 * 117.50310 * 13.50871 * 27 26 25
29 29 C 1.52993 * 117.49725 * 304.84598 * 27 26 25
30 30 H 1.09002 * 109.46818 * 187.63024 * 1 2 3
31 31 H 1.09001 * 109.47077 * 307.62578 * 1 2 3
32 32 H 1.08999 * 109.47313 * 67.62823 * 1 2 3
33 33 H 1.08998 * 109.47425 * 299.99957 * 4 2 1
34 34 H 1.08995 * 109.47221 * 59.99785 * 4 2 1
35 35 H 1.09000 * 109.47074 * 179.97438 * 5 4 2
36 36 H 1.09000 * 109.46895 * 60.00024 * 5 4 2
37 37 H 1.09003 * 109.47102 * 300.00557 * 6 5 4
38 38 H 1.08998 * 109.46996 * 179.97438 * 6 5 4
39 39 H 1.08995 * 109.46883 * 60.00155 * 7 6 5
40 40 H 1.09001 * 109.46739 * 179.97438 * 7 6 5
41 41 H 1.08993 * 109.46756 * 185.13677 * 9 8 7
42 42 H 1.08994 * 109.46736 * 305.13744 * 9 8 7
43 43 H 0.97001 * 120.00230 * 5.00838 * 10 9 8
44 44 H 0.97003 * 120.00041 * 179.97438 * 14 13 11
45 45 H 0.96995 * 120.00043 * 9.29918 * 19 8 7
46 46 H 1.08000 * 125.37819 * 180.16160 * 24 23 22
47 47 H 1.09008 * 115.54570 * 159.18355 * 27 26 25
48 48 H 1.09006 * 117.49572 * 0.02562 * 28 27 26
49 49 H 1.08994 * 117.50077 * 145.01816 * 28 27 26
50 50 H 1.09001 * 117.50014 * 214.98543 * 29 27 26
51 51 H 1.08998 * 117.50153 * 0.02562 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5701 -0.7207 1.2496
6 6 4.0806 -1.4416 0.0004
7 6 3.5705 -0.7204 -1.2489
8 6 2.0406 -0.7209 -1.2492
9 6 1.5305 0.0009 -2.4982
10 7 1.9157 -0.7566 -3.6914
11 6 1.6567 -0.2503 -4.9371
12 1 1.2424 0.7417 -5.0414
13 6 1.9265 -1.0118 -6.0659
14 7 1.7687 -0.4910 -7.2643
15 14 2.5136 -2.7758 -5.8840
16 1 1.3509 -3.6957 -5.9687
17 1 3.4751 -3.0921 -6.9704
18 1 3.1813 -2.9420 -4.5680
19 7 1.5527 -2.1024 -1.2495
20 6 0.2422 -2.3542 -1.4384
21 8 -0.5174 -1.4464 -1.7174
22 6 -0.2705 -3.7301 -1.3068
23 7 0.4708 -4.8529 -1.1036
24 6 -0.3338 -5.8711 -1.0376
25 8 -1.5953 -5.4488 -1.2026
26 6 -1.5735 -4.1170 -1.3717
27 6 -2.7654 -3.2212 -1.5909
28 6 -4.1510 -3.8088 -1.3157
29 6 -3.6977 -3.5583 -2.7562
30 1 -0.3633 -1.0186 0.1365
31 1 -0.3633 0.6274 0.8139
32 1 -0.3634 0.3911 -0.9503
33 1 1.6767 -0.2075 2.1393
34 1 1.6767 -1.7489 1.2492
35 1 3.9334 -1.2342 2.1398
36 1 3.9330 0.3071 1.2498
37 1 3.7175 -2.4694 0.0001
38 1 5.1706 -1.4408 0.0004
39 1 3.9335 0.3073 -1.2487
40 1 3.9346 -1.2338 -2.1389
41 1 0.4444 0.0808 -2.4534
42 1 1.9667 0.9987 -2.5447
43 1 2.3542 -1.6169 -3.5992
44 1 1.9577 -1.0231 -8.0530
45 1 2.1729 -2.8357 -1.1137
46 1 -0.0333 -6.8963 -0.8796
47 1 -2.6104 -2.1674 -1.3589
48 1 -4.2005 -4.8433 -0.9757
49 1 -4.9077 -3.1417 -0.9031
50 1 -4.1564 -2.7265 -3.2907
51 1 -3.4492 -4.4283 -3.3641
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753535803.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:28:11
Heat of formation + Delta-G solvation = 39.714812 kcal
Electronic energy + Delta-G solvation = -33437.165725 eV
Core-core repulsion = 29340.041109 eV
Total energy + Delta-G solvation = -4097.124617 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-43.48760 -40.74794 -37.83072 -37.22941 -34.88348 -34.70007 -33.14051 -32.47317
-31.34331 -30.31089 -29.60733 -26.52874 -25.12780 -24.57727 -23.70705 -22.59793
-22.52159 -21.29973 -21.13253 -20.51666 -20.34705 -18.83456 -18.18595 -17.57779
-16.84279 -16.55321 -15.91861 -15.64361 -15.21701 -14.94594 -14.54932 -14.35653
-14.10234 -13.85083 -13.76316 -13.61564 -13.45112 -12.84522 -12.61178 -12.54180
-12.30910 -11.99673 -11.83839 -11.72570 -11.59660 -11.45899 -11.38770 -11.23209
-11.12283 -11.02059 -10.86782 -10.78475 -10.77156 -10.51806 -10.38537 -10.09354
-9.98157 -9.71057 -9.48907 -9.41673 -8.74202 -8.65554 -8.36780 -6.99541
-5.65755 -2.96910 1.08234 2.08670 2.44963 3.38556 3.41340 3.46953
3.50125 3.51680 3.77317 4.01495 4.30551 4.67370 4.68493 4.78556
4.79661 4.82414 4.86031 4.98531 5.05632 5.19483 5.24676 5.42778
5.48553 5.52740 5.56853 5.57642 5.61507 5.66274 5.71310 5.76958
5.77580 5.89793 5.94416 5.99830 6.03212 6.04341 6.10349 6.13808
6.21184 6.24394 6.33606 6.39562 6.48076 6.57243 6.62023 6.76010
7.02647 7.21336 7.39514 7.93244 8.14691 8.53437 8.59585 9.36061
10.08737 10.30505 11.53437
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.007353 B = 0.005938 C = 0.004215
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3806.915356 B = 4714.027905 C = 6641.887950
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.091 4.091
3 H 0.076 0.924
4 C -0.111 4.111
5 C -0.117 4.117
6 C -0.121 4.121
7 C -0.120 4.120
8 C 0.176 3.824
9 C 0.137 3.863
10 N -0.749 5.749
11 C -0.226 4.226
12 H 0.088 0.912
13 C 0.001 3.999
14 N -0.938 5.938
15 Si 0.884 3.116
16 H -0.290 1.290
17 H -0.293 1.293
18 H -0.281 1.281
19 N -0.698 5.698
20 C 0.601 3.399
21 O -0.502 6.502
22 C -0.063 4.063
23 N -0.462 5.462
24 C 0.167 3.833
25 O -0.202 6.202
26 C 0.069 3.931
27 C -0.082 4.082
28 C -0.172 4.172
29 C -0.155 4.155
30 H 0.056 0.944
31 H 0.030 0.970
32 H 0.085 0.915
33 H 0.057 0.943
34 H 0.060 0.940
35 H 0.056 0.944
36 H 0.061 0.939
37 H 0.059 0.941
38 H 0.062 0.938
39 H 0.079 0.921
40 H 0.075 0.925
41 H 0.070 0.930
42 H 0.028 0.972
43 H 0.360 0.640
44 H 0.256 0.744
45 H 0.401 0.599
46 H 0.253 0.747
47 H 0.159 0.841
48 H 0.097 0.903
49 H 0.106 0.894
50 H 0.111 0.889
51 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.793 -8.291 20.232 22.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.111 4.111
3 H 0.095 0.905
4 C -0.149 4.149
5 C -0.155 4.155
6 C -0.159 4.159
7 C -0.158 4.158
8 C 0.090 3.910
9 C 0.010 3.990
10 N -0.395 5.395
11 C -0.356 4.356
12 H 0.106 0.894
13 C -0.194 4.194
14 N -0.587 5.587
15 Si 0.716 3.284
16 H -0.217 1.217
17 H -0.220 1.220
18 H -0.207 1.207
19 N -0.350 5.350
20 C 0.387 3.613
21 O -0.377 6.377
22 C -0.183 4.183
23 N -0.191 5.191
24 C -0.061 4.061
25 O -0.088 6.088
26 C 0.013 3.987
27 C -0.100 4.100
28 C -0.209 4.209
29 C -0.192 4.192
30 H 0.075 0.925
31 H 0.049 0.951
32 H 0.103 0.897
33 H 0.076 0.924
34 H 0.079 0.921
35 H 0.075 0.925
36 H 0.080 0.920
37 H 0.078 0.922
38 H 0.081 0.919
39 H 0.098 0.902
40 H 0.094 0.906
41 H 0.088 0.912
42 H 0.046 0.954
43 H 0.193 0.807
44 H 0.066 0.934
45 H 0.237 0.763
46 H 0.268 0.732
47 H 0.176 0.824
48 H 0.116 0.884
49 H 0.124 0.876
50 H 0.129 0.871
51 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -4.762 -7.501 19.926 21.817
hybrid contribution 0.389 -2.035 -0.087 2.073
sum -4.373 -9.536 19.839 22.442
Atomic orbital electron populations
1.22385 0.93957 1.01731 1.02045 1.21478 0.96888 0.99154 0.93605
0.90546 1.21561 0.95137 1.00789 0.97374 1.21530 0.95904 1.00608
0.97438 1.21578 1.00197 0.99358 0.94772 1.21793 0.93591 1.02255
0.98153 1.20727 0.93376 0.80986 0.95876 1.21325 1.00354 0.93332
0.83999 1.42664 1.72505 1.22453 1.01927 1.19055 1.34662 1.00160
0.81738 0.89383 1.24626 1.02130 0.97484 0.95164 1.69704 1.56163
1.36130 0.96692 0.86541 0.78171 0.87383 0.76348 1.21682 1.21998
1.20732 1.45688 1.07663 1.08810 1.72818 1.16415 0.82866 0.84518
0.77531 1.90791 1.57506 1.43221 1.46227 1.21660 0.90053 0.94833
1.11727 1.70741 1.34208 0.97941 1.16206 1.27916 0.75841 1.00871
1.01500 1.84299 1.33824 1.22273 1.68452 1.22623 0.96444 0.80216
0.99419 1.20810 0.84974 0.98001 1.06172 1.23094 0.95892 1.02377
0.99505 1.23084 1.01060 1.04067 0.91014 0.92515 0.95106 0.89678
0.92435 0.92145 0.92500 0.92007 0.92239 0.91905 0.90224 0.90626
0.91237 0.95430 0.80672 0.93355 0.76347 0.73159 0.82397 0.88405
0.87606 0.87080 0.88483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.10 7.30 37.16 0.27 -1.83 16
2 C -0.09 -1.25 2.07 -90.62 -0.19 -1.44 16
3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
4 C -0.11 -1.29 5.04 -26.73 -0.13 -1.43 16
5 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16
6 C -0.12 -1.41 5.75 -26.73 -0.15 -1.56 16
7 C -0.12 -1.74 4.70 -26.73 -0.13 -1.87 16
8 C 0.18 2.80 0.32 -131.82 -0.04 2.76 16
9 C 0.14 2.81 4.43 -4.04 -0.02 2.79 16
10 N -0.75 -18.49 4.90 -59.91 -0.29 -18.78 16
11 C -0.23 -6.65 10.47 -15.06 -0.16 -6.81 16
12 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16
13 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16
14 N -0.94 -30.47 13.97 55.49 0.78 -29.70 16
15 Si 0.88 23.54 28.02 -169.99 -4.76 18.78 16
16 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16
17 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16
18 H -0.28 -7.01 6.14 56.52 0.35 -6.66 16
19 N -0.70 -11.30 3.50 -48.66 -0.17 -11.47 16
20 C 0.60 10.50 5.86 -12.52 -0.07 10.43 16
21 O -0.50 -9.43 8.34 5.27 0.04 -9.39 16
22 C -0.06 -1.01 6.99 -83.02 -0.58 -1.59 16
23 N -0.46 -6.66 11.07 -11.48 -0.13 -6.79 16
24 C 0.17 1.82 13.19 51.96 0.69 2.50 16
25 O -0.20 -2.50 10.55 6.50 0.07 -2.43 16
26 C 0.07 1.00 6.89 -35.08 -0.24 0.76 16
27 C -0.08 -1.06 5.67 -91.78 -0.52 -1.58 16
28 C -0.17 -1.68 10.18 -26.70 -0.27 -1.95 16
29 C -0.16 -1.80 10.24 -26.70 -0.27 -2.08 16
30 H 0.06 0.87 5.33 -51.93 -0.28 0.59 16
31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.08 1.43 5.09 -51.93 -0.26 1.17 16
33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
34 H 0.06 0.76 7.60 -51.93 -0.39 0.36 16
35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.06 0.70 6.69 -51.93 -0.35 0.35 16
38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
40 H 0.08 1.27 7.30 -51.93 -0.38 0.89 16
41 H 0.07 1.54 4.21 -51.93 -0.22 1.32 16
42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16
43 H 0.36 8.83 4.34 -40.82 -0.18 8.65 16
44 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16
45 H 0.40 6.17 6.80 -40.82 -0.28 5.90 16
46 H 0.25 1.31 8.06 -52.49 -0.42 0.88 16
47 H 0.16 2.19 6.55 -51.92 -0.34 1.85 16
48 H 0.10 0.90 8.04 -51.93 -0.42 0.48 16
49 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16
50 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16
51 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16
LS Contribution 387.18 15.07 5.83 5.83
Total: -1.00 -34.84 387.18 -8.49 -43.33
By element:
Atomic # 1 Polarization: 22.76 SS G_CDS: -7.78 Total: 14.98 kcal
Atomic # 6 Polarization: -2.28 SS G_CDS: -2.08 Total: -4.36 kcal
Atomic # 7 Polarization: -66.93 SS G_CDS: 0.18 Total: -66.74 kcal
Atomic # 8 Polarization: -11.93 SS G_CDS: 0.11 Total: -11.81 kcal
Atomic # 14 Polarization: 23.54 SS G_CDS: -4.76 Total: 18.78 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -34.84 -8.49 -43.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753535803.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.040 kcal
(2) G-P(sol) polarization free energy of solvation -34.836 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.204 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds