Wall clock time and date at job start Wed Apr 1 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47317 * 2 1 4 4 C 1.53002 * 109.46983 * 120.00156 * 2 1 3 5 5 C 1.53005 * 109.46983 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47057 * 299.99724 * 5 4 2 7 7 C 1.53004 * 109.47040 * 59.99897 * 6 5 4 8 8 C 1.52997 * 109.47313 * 300.00199 * 7 6 5 9 9 C 1.53004 * 109.47313 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.46882 * 65.13771 * 9 8 7 11 11 C 1.36935 * 120.00159 * 185.00414 * 10 9 8 12 12 H 1.08006 * 119.99936 * 4.99518 * 11 10 9 13 13 C 1.38810 * 120.00882 * 184.99439 * 11 10 9 14 14 N 1.31615 * 120.00591 * 184.89357 * 13 11 10 15 15 Si 1.86802 * 119.99524 * 4.89505 * 13 11 10 16 16 H 1.48504 * 109.47160 * 94.73342 * 15 13 11 17 17 H 1.48495 * 109.47632 * 214.73343 * 15 13 11 18 18 H 1.48500 * 109.47113 * 334.73767 * 15 13 11 19 19 N 1.46506 * 109.46834 * 300.00007 * 8 7 6 20 20 C 1.34783 * 119.99766 * 189.30082 * 19 8 7 21 21 O 1.21612 * 119.99974 * 6.03352 * 20 19 8 22 22 C 1.47421 * 119.99933 * 186.03414 * 20 19 8 23 23 N 1.36068 * 126.44522 * 354.53443 * 22 20 19 24 24 C 1.29939 * 108.47265 * 179.82706 * 23 22 20 25 25 O 1.34046 * 109.24480 * 0.44154 * 24 23 22 26 26 C 1.34264 * 108.22607 * 359.72537 * 25 24 23 27 27 C 1.50702 * 126.52266 * 180.02562 * 26 25 24 28 28 C 1.52996 * 117.50310 * 13.50871 * 27 26 25 29 29 C 1.52993 * 117.49725 * 304.84598 * 27 26 25 30 30 H 1.09002 * 109.46818 * 187.63024 * 1 2 3 31 31 H 1.09001 * 109.47077 * 307.62578 * 1 2 3 32 32 H 1.08999 * 109.47313 * 67.62823 * 1 2 3 33 33 H 1.08998 * 109.47425 * 299.99957 * 4 2 1 34 34 H 1.08995 * 109.47221 * 59.99785 * 4 2 1 35 35 H 1.09000 * 109.47074 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.46895 * 60.00024 * 5 4 2 37 37 H 1.09003 * 109.47102 * 300.00557 * 6 5 4 38 38 H 1.08998 * 109.46996 * 179.97438 * 6 5 4 39 39 H 1.08995 * 109.46883 * 60.00155 * 7 6 5 40 40 H 1.09001 * 109.46739 * 179.97438 * 7 6 5 41 41 H 1.08993 * 109.46756 * 185.13677 * 9 8 7 42 42 H 1.08994 * 109.46736 * 305.13744 * 9 8 7 43 43 H 0.97001 * 120.00230 * 5.00838 * 10 9 8 44 44 H 0.97003 * 120.00041 * 179.97438 * 14 13 11 45 45 H 0.96995 * 120.00043 * 9.29918 * 19 8 7 46 46 H 1.08000 * 125.37819 * 180.16160 * 24 23 22 47 47 H 1.09008 * 115.54570 * 159.18355 * 27 26 25 48 48 H 1.09006 * 117.49572 * 0.02562 * 28 27 26 49 49 H 1.08994 * 117.50077 * 145.01816 * 28 27 26 50 50 H 1.09001 * 117.50014 * 214.98543 * 29 27 26 51 51 H 1.08998 * 117.50153 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2496 6 6 4.0806 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0406 -0.7209 -1.2492 9 6 1.5305 0.0009 -2.4982 10 7 1.9157 -0.7566 -3.6914 11 6 1.6567 -0.2503 -4.9371 12 1 1.2424 0.7417 -5.0414 13 6 1.9265 -1.0118 -6.0659 14 7 1.7687 -0.4910 -7.2643 15 14 2.5136 -2.7758 -5.8840 16 1 1.3509 -3.6957 -5.9687 17 1 3.4751 -3.0921 -6.9704 18 1 3.1813 -2.9420 -4.5680 19 7 1.5527 -2.1024 -1.2495 20 6 0.2422 -2.3542 -1.4384 21 8 -0.5174 -1.4464 -1.7174 22 6 -0.2705 -3.7301 -1.3068 23 7 0.4708 -4.8529 -1.1036 24 6 -0.3338 -5.8711 -1.0376 25 8 -1.5953 -5.4488 -1.2026 26 6 -1.5735 -4.1170 -1.3717 27 6 -2.7654 -3.2212 -1.5909 28 6 -4.1510 -3.8088 -1.3157 29 6 -3.6977 -3.5583 -2.7562 30 1 -0.3633 -1.0186 0.1365 31 1 -0.3633 0.6274 0.8139 32 1 -0.3634 0.3911 -0.9503 33 1 1.6767 -0.2075 2.1393 34 1 1.6767 -1.7489 1.2492 35 1 3.9334 -1.2342 2.1398 36 1 3.9330 0.3071 1.2498 37 1 3.7175 -2.4694 0.0001 38 1 5.1706 -1.4408 0.0004 39 1 3.9335 0.3073 -1.2487 40 1 3.9346 -1.2338 -2.1389 41 1 0.4444 0.0808 -2.4534 42 1 1.9667 0.9987 -2.5447 43 1 2.3542 -1.6169 -3.5992 44 1 1.9577 -1.0231 -8.0530 45 1 2.1729 -2.8357 -1.1137 46 1 -0.0333 -6.8963 -0.8796 47 1 -2.6104 -2.1674 -1.3589 48 1 -4.2005 -4.8433 -0.9757 49 1 -4.9077 -3.1417 -0.9031 50 1 -4.1564 -2.7265 -3.2907 51 1 -3.4492 -4.4283 -3.3641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753535803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:11 Heat of formation + Delta-G solvation = 39.714812 kcal Electronic energy + Delta-G solvation = -33437.165725 eV Core-core repulsion = 29340.041109 eV Total energy + Delta-G solvation = -4097.124617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.48760 -40.74794 -37.83072 -37.22941 -34.88348 -34.70007 -33.14051 -32.47317 -31.34331 -30.31089 -29.60733 -26.52874 -25.12780 -24.57727 -23.70705 -22.59793 -22.52159 -21.29973 -21.13253 -20.51666 -20.34705 -18.83456 -18.18595 -17.57779 -16.84279 -16.55321 -15.91861 -15.64361 -15.21701 -14.94594 -14.54932 -14.35653 -14.10234 -13.85083 -13.76316 -13.61564 -13.45112 -12.84522 -12.61178 -12.54180 -12.30910 -11.99673 -11.83839 -11.72570 -11.59660 -11.45899 -11.38770 -11.23209 -11.12283 -11.02059 -10.86782 -10.78475 -10.77156 -10.51806 -10.38537 -10.09354 -9.98157 -9.71057 -9.48907 -9.41673 -8.74202 -8.65554 -8.36780 -6.99541 -5.65755 -2.96910 1.08234 2.08670 2.44963 3.38556 3.41340 3.46953 3.50125 3.51680 3.77317 4.01495 4.30551 4.67370 4.68493 4.78556 4.79661 4.82414 4.86031 4.98531 5.05632 5.19483 5.24676 5.42778 5.48553 5.52740 5.56853 5.57642 5.61507 5.66274 5.71310 5.76958 5.77580 5.89793 5.94416 5.99830 6.03212 6.04341 6.10349 6.13808 6.21184 6.24394 6.33606 6.39562 6.48076 6.57243 6.62023 6.76010 7.02647 7.21336 7.39514 7.93244 8.14691 8.53437 8.59585 9.36061 10.08737 10.30505 11.53437 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007353 B = 0.005938 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3806.915356 B = 4714.027905 C = 6641.887950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.120 4.120 8 C 0.176 3.824 9 C 0.137 3.863 10 N -0.749 5.749 11 C -0.226 4.226 12 H 0.088 0.912 13 C 0.001 3.999 14 N -0.938 5.938 15 Si 0.884 3.116 16 H -0.290 1.290 17 H -0.293 1.293 18 H -0.281 1.281 19 N -0.698 5.698 20 C 0.601 3.399 21 O -0.502 6.502 22 C -0.063 4.063 23 N -0.462 5.462 24 C 0.167 3.833 25 O -0.202 6.202 26 C 0.069 3.931 27 C -0.082 4.082 28 C -0.172 4.172 29 C -0.155 4.155 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.360 0.640 44 H 0.256 0.744 45 H 0.401 0.599 46 H 0.253 0.747 47 H 0.159 0.841 48 H 0.097 0.903 49 H 0.106 0.894 50 H 0.111 0.889 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -8.291 20.232 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.158 4.158 8 C 0.090 3.910 9 C 0.010 3.990 10 N -0.395 5.395 11 C -0.356 4.356 12 H 0.106 0.894 13 C -0.194 4.194 14 N -0.587 5.587 15 Si 0.716 3.284 16 H -0.217 1.217 17 H -0.220 1.220 18 H -0.207 1.207 19 N -0.350 5.350 20 C 0.387 3.613 21 O -0.377 6.377 22 C -0.183 4.183 23 N -0.191 5.191 24 C -0.061 4.061 25 O -0.088 6.088 26 C 0.013 3.987 27 C -0.100 4.100 28 C -0.209 4.209 29 C -0.192 4.192 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.193 0.807 44 H 0.066 0.934 45 H 0.237 0.763 46 H 0.268 0.732 47 H 0.176 0.824 48 H 0.116 0.884 49 H 0.124 0.876 50 H 0.129 0.871 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.762 -7.501 19.926 21.817 hybrid contribution 0.389 -2.035 -0.087 2.073 sum -4.373 -9.536 19.839 22.442 Atomic orbital electron populations 1.22385 0.93957 1.01731 1.02045 1.21478 0.96888 0.99154 0.93605 0.90546 1.21561 0.95137 1.00789 0.97374 1.21530 0.95904 1.00608 0.97438 1.21578 1.00197 0.99358 0.94772 1.21793 0.93591 1.02255 0.98153 1.20727 0.93376 0.80986 0.95876 1.21325 1.00354 0.93332 0.83999 1.42664 1.72505 1.22453 1.01927 1.19055 1.34662 1.00160 0.81738 0.89383 1.24626 1.02130 0.97484 0.95164 1.69704 1.56163 1.36130 0.96692 0.86541 0.78171 0.87383 0.76348 1.21682 1.21998 1.20732 1.45688 1.07663 1.08810 1.72818 1.16415 0.82866 0.84518 0.77531 1.90791 1.57506 1.43221 1.46227 1.21660 0.90053 0.94833 1.11727 1.70741 1.34208 0.97941 1.16206 1.27916 0.75841 1.00871 1.01500 1.84299 1.33824 1.22273 1.68452 1.22623 0.96444 0.80216 0.99419 1.20810 0.84974 0.98001 1.06172 1.23094 0.95892 1.02377 0.99505 1.23084 1.01060 1.04067 0.91014 0.92515 0.95106 0.89678 0.92435 0.92145 0.92500 0.92007 0.92239 0.91905 0.90224 0.90626 0.91237 0.95430 0.80672 0.93355 0.76347 0.73159 0.82397 0.88405 0.87606 0.87080 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.30 37.16 0.27 -1.83 16 2 C -0.09 -1.25 2.07 -90.62 -0.19 -1.44 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.11 -1.29 5.04 -26.73 -0.13 -1.43 16 5 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 6 C -0.12 -1.41 5.75 -26.73 -0.15 -1.56 16 7 C -0.12 -1.74 4.70 -26.73 -0.13 -1.87 16 8 C 0.18 2.80 0.32 -131.82 -0.04 2.76 16 9 C 0.14 2.81 4.43 -4.04 -0.02 2.79 16 10 N -0.75 -18.49 4.90 -59.91 -0.29 -18.78 16 11 C -0.23 -6.65 10.47 -15.06 -0.16 -6.81 16 12 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 13 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 14 N -0.94 -30.47 13.97 55.49 0.78 -29.70 16 15 Si 0.88 23.54 28.02 -169.99 -4.76 18.78 16 16 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 17 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 18 H -0.28 -7.01 6.14 56.52 0.35 -6.66 16 19 N -0.70 -11.30 3.50 -48.66 -0.17 -11.47 16 20 C 0.60 10.50 5.86 -12.52 -0.07 10.43 16 21 O -0.50 -9.43 8.34 5.27 0.04 -9.39 16 22 C -0.06 -1.01 6.99 -83.02 -0.58 -1.59 16 23 N -0.46 -6.66 11.07 -11.48 -0.13 -6.79 16 24 C 0.17 1.82 13.19 51.96 0.69 2.50 16 25 O -0.20 -2.50 10.55 6.50 0.07 -2.43 16 26 C 0.07 1.00 6.89 -35.08 -0.24 0.76 16 27 C -0.08 -1.06 5.67 -91.78 -0.52 -1.58 16 28 C -0.17 -1.68 10.18 -26.70 -0.27 -1.95 16 29 C -0.16 -1.80 10.24 -26.70 -0.27 -2.08 16 30 H 0.06 0.87 5.33 -51.93 -0.28 0.59 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.43 5.09 -51.93 -0.26 1.17 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.76 7.60 -51.93 -0.39 0.36 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.70 6.69 -51.93 -0.35 0.35 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.27 7.30 -51.93 -0.38 0.89 16 41 H 0.07 1.54 4.21 -51.93 -0.22 1.32 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.36 8.83 4.34 -40.82 -0.18 8.65 16 44 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 45 H 0.40 6.17 6.80 -40.82 -0.28 5.90 16 46 H 0.25 1.31 8.06 -52.49 -0.42 0.88 16 47 H 0.16 2.19 6.55 -51.92 -0.34 1.85 16 48 H 0.10 0.90 8.04 -51.93 -0.42 0.48 16 49 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 51 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -34.84 387.18 -8.49 -43.33 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -7.78 Total: 14.98 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.08 Total: -4.36 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: 0.18 Total: -66.74 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.11 Total: -11.81 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.76 Total: 18.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.84 -8.49 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753535803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.040 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds