Wall clock time and date at job start Wed Apr 1 2020 05:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47317 * 2 1 4 4 C 1.53002 * 109.46983 * 120.00156 * 2 1 3 5 5 C 1.53005 * 109.46983 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47057 * 299.99724 * 5 4 2 7 7 C 1.53004 * 109.47040 * 59.99897 * 6 5 4 8 8 C 1.52997 * 109.47313 * 300.00199 * 7 6 5 9 9 C 1.53004 * 109.47313 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.46882 * 65.13771 * 9 8 7 11 11 C 1.36935 * 120.00159 * 185.00414 * 10 9 8 12 12 H 1.08006 * 119.99936 * 4.99518 * 11 10 9 13 13 C 1.38810 * 120.00882 * 184.99439 * 11 10 9 14 14 N 1.31615 * 120.00591 * 184.89357 * 13 11 10 15 15 Si 1.86802 * 119.99524 * 4.89505 * 13 11 10 16 16 H 1.48504 * 109.47160 * 94.73342 * 15 13 11 17 17 H 1.48495 * 109.47632 * 214.73343 * 15 13 11 18 18 H 1.48500 * 109.47113 * 334.73767 * 15 13 11 19 19 N 1.46506 * 109.46834 * 300.00007 * 8 7 6 20 20 C 1.34783 * 119.99766 * 189.30082 * 19 8 7 21 21 O 1.21612 * 119.99974 * 6.03352 * 20 19 8 22 22 C 1.47421 * 119.99933 * 186.03414 * 20 19 8 23 23 N 1.36068 * 126.44522 * 354.53443 * 22 20 19 24 24 C 1.29939 * 108.47265 * 179.82706 * 23 22 20 25 25 O 1.34046 * 109.24480 * 0.44154 * 24 23 22 26 26 C 1.34264 * 108.22607 * 359.72537 * 25 24 23 27 27 C 1.50702 * 126.52266 * 180.02562 * 26 25 24 28 28 C 1.52996 * 117.50310 * 13.50871 * 27 26 25 29 29 C 1.52993 * 117.49725 * 304.84598 * 27 26 25 30 30 H 1.09002 * 109.46818 * 187.63024 * 1 2 3 31 31 H 1.09001 * 109.47077 * 307.62578 * 1 2 3 32 32 H 1.08999 * 109.47313 * 67.62823 * 1 2 3 33 33 H 1.08998 * 109.47425 * 299.99957 * 4 2 1 34 34 H 1.08995 * 109.47221 * 59.99785 * 4 2 1 35 35 H 1.09000 * 109.47074 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.46895 * 60.00024 * 5 4 2 37 37 H 1.09003 * 109.47102 * 300.00557 * 6 5 4 38 38 H 1.08998 * 109.46996 * 179.97438 * 6 5 4 39 39 H 1.08995 * 109.46883 * 60.00155 * 7 6 5 40 40 H 1.09001 * 109.46739 * 179.97438 * 7 6 5 41 41 H 1.08993 * 109.46756 * 185.13677 * 9 8 7 42 42 H 1.08994 * 109.46736 * 305.13744 * 9 8 7 43 43 H 0.97001 * 120.00230 * 5.00838 * 10 9 8 44 44 H 0.97003 * 120.00041 * 179.97438 * 14 13 11 45 45 H 0.96995 * 120.00043 * 9.29918 * 19 8 7 46 46 H 1.08000 * 125.37819 * 180.16160 * 24 23 22 47 47 H 1.09008 * 115.54570 * 159.18355 * 27 26 25 48 48 H 1.09006 * 117.49572 * 0.02562 * 28 27 26 49 49 H 1.08994 * 117.50077 * 145.01816 * 28 27 26 50 50 H 1.09001 * 117.50014 * 214.98543 * 29 27 26 51 51 H 1.08998 * 117.50153 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2496 6 6 4.0806 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0406 -0.7209 -1.2492 9 6 1.5305 0.0009 -2.4982 10 7 1.9157 -0.7566 -3.6914 11 6 1.6567 -0.2503 -4.9371 12 1 1.2424 0.7417 -5.0414 13 6 1.9265 -1.0118 -6.0659 14 7 1.7687 -0.4910 -7.2643 15 14 2.5136 -2.7758 -5.8840 16 1 1.3509 -3.6957 -5.9687 17 1 3.4751 -3.0921 -6.9704 18 1 3.1813 -2.9420 -4.5680 19 7 1.5527 -2.1024 -1.2495 20 6 0.2422 -2.3542 -1.4384 21 8 -0.5174 -1.4464 -1.7174 22 6 -0.2705 -3.7301 -1.3068 23 7 0.4708 -4.8529 -1.1036 24 6 -0.3338 -5.8711 -1.0376 25 8 -1.5953 -5.4488 -1.2026 26 6 -1.5735 -4.1170 -1.3717 27 6 -2.7654 -3.2212 -1.5909 28 6 -4.1510 -3.8088 -1.3157 29 6 -3.6977 -3.5583 -2.7562 30 1 -0.3633 -1.0186 0.1365 31 1 -0.3633 0.6274 0.8139 32 1 -0.3634 0.3911 -0.9503 33 1 1.6767 -0.2075 2.1393 34 1 1.6767 -1.7489 1.2492 35 1 3.9334 -1.2342 2.1398 36 1 3.9330 0.3071 1.2498 37 1 3.7175 -2.4694 0.0001 38 1 5.1706 -1.4408 0.0004 39 1 3.9335 0.3073 -1.2487 40 1 3.9346 -1.2338 -2.1389 41 1 0.4444 0.0808 -2.4534 42 1 1.9667 0.9987 -2.5447 43 1 2.3542 -1.6169 -3.5992 44 1 1.9577 -1.0231 -8.0530 45 1 2.1729 -2.8357 -1.1137 46 1 -0.0333 -6.8963 -0.8796 47 1 -2.6104 -2.1674 -1.3589 48 1 -4.2005 -4.8433 -0.9757 49 1 -4.9077 -3.1417 -0.9031 50 1 -4.1564 -2.7265 -3.2907 51 1 -3.4492 -4.4283 -3.3641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753535803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:10 Heat of formation + Delta-G solvation = 15.175438 kcal Electronic energy + Delta-G solvation = -33438.229832 eV Core-core repulsion = 29340.041109 eV Total energy + Delta-G solvation = -4098.188724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.47439 -42.01538 -39.01844 -38.15881 -36.55163 -35.88986 -34.61650 -33.61337 -33.28593 -31.52810 -30.91272 -27.92083 -26.60733 -25.67771 -24.66056 -24.38573 -23.39238 -22.49053 -22.32945 -21.68086 -21.43623 -20.20741 -19.60136 -19.27685 -17.86377 -17.60500 -17.17162 -16.61198 -16.58011 -16.44904 -15.98525 -15.64178 -15.33312 -15.16257 -15.02743 -14.84655 -14.75341 -14.57641 -14.17236 -13.79546 -13.59856 -13.34453 -13.13246 -12.89564 -12.87461 -12.69471 -12.57355 -12.53631 -12.50428 -12.22346 -12.09097 -12.06222 -11.98279 -11.88253 -11.83732 -11.48153 -11.37392 -11.14491 -11.07430 -10.84891 -10.53431 -9.80325 -9.66713 -9.15463 -8.04576 -5.33033 0.02701 1.09490 1.24789 1.30312 1.36406 1.49495 2.19219 2.32521 2.41995 2.82002 3.12801 3.27077 3.34495 3.56557 3.67437 3.75726 3.79922 3.89848 3.93383 3.96621 4.12172 4.16232 4.27834 4.42022 4.46659 4.52059 4.56619 4.63575 4.65483 4.66991 4.74496 4.89003 4.89518 4.90196 5.01247 5.06980 5.09650 5.12337 5.16124 5.20430 5.21723 5.25873 5.32995 5.37380 5.41982 5.53322 5.70034 5.72820 5.79350 6.19869 6.36564 6.68825 7.08094 7.30775 7.86353 8.06807 9.17935 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007353 B = 0.005938 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3806.915356 B = 4714.027905 C = 6641.887950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.103 4.103 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.118 4.118 8 C 0.183 3.817 9 C 0.135 3.865 10 N -0.746 5.746 11 C -0.217 4.217 12 H 0.053 0.947 13 C -0.063 4.063 14 N -0.983 5.983 15 Si 0.951 3.049 16 H -0.295 1.295 17 H -0.289 1.289 18 H -0.256 1.256 19 N -0.694 5.694 20 C 0.593 3.407 21 O -0.526 6.526 22 C -0.096 4.096 23 N -0.492 5.492 24 C 0.191 3.809 25 O -0.198 6.198 26 C 0.067 3.933 27 C -0.109 4.109 28 C -0.137 4.137 29 C -0.164 4.164 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.363 0.637 44 H 0.256 0.744 45 H 0.406 0.594 46 H 0.307 0.693 47 H 0.140 0.860 48 H 0.110 0.890 49 H 0.126 0.874 50 H 0.112 0.888 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -10.835 23.239 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.101 0.899 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.156 4.156 8 C 0.097 3.903 9 C 0.008 3.992 10 N -0.391 5.391 11 C -0.349 4.349 12 H 0.071 0.929 13 C -0.254 4.254 14 N -0.635 5.635 15 Si 0.780 3.220 16 H -0.222 1.222 17 H -0.215 1.215 18 H -0.181 1.181 19 N -0.346 5.346 20 C 0.379 3.621 21 O -0.404 6.404 22 C -0.215 4.215 23 N -0.220 5.220 24 C -0.037 4.037 25 O -0.085 6.085 26 C 0.010 3.990 27 C -0.127 4.127 28 C -0.174 4.174 29 C -0.201 4.201 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.197 0.803 44 H 0.065 0.935 45 H 0.242 0.758 46 H 0.321 0.679 47 H 0.158 0.842 48 H 0.128 0.872 49 H 0.145 0.855 50 H 0.130 0.870 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.066 -10.037 22.989 25.412 hybrid contribution 0.086 -1.192 -1.023 1.573 sum -3.979 -11.229 21.966 24.989 Atomic orbital electron populations 1.22223 0.94790 1.01251 1.01004 1.21457 0.96084 0.99548 0.93608 0.89871 1.21496 0.96165 1.00020 0.96392 1.21515 0.94656 1.01261 0.97518 1.21545 1.01134 0.98962 0.93558 1.21774 0.92158 1.02734 0.98953 1.20631 0.94435 0.80824 0.94406 1.21428 0.99566 0.93371 0.84823 1.42586 1.72291 1.22699 1.01546 1.19022 1.33158 0.98798 0.83874 0.92917 1.25359 1.03333 1.01928 0.94743 1.69873 1.58136 1.37910 0.97572 0.85444 0.77545 0.81491 0.77487 1.22205 1.21548 1.18130 1.45663 1.07491 1.08865 1.72554 1.16746 0.82993 0.85205 0.77108 1.90790 1.58050 1.44204 1.47323 1.21573 0.91092 0.94771 1.14020 1.70702 1.34996 0.98153 1.18183 1.29180 0.74707 1.02050 0.97780 1.84327 1.34623 1.21129 1.68445 1.22768 0.96300 0.81096 0.98802 1.20775 0.86339 0.97405 1.08169 1.23198 0.93713 1.03152 0.97310 1.23138 1.01088 1.04024 0.91894 0.93437 0.93408 0.92621 0.90855 0.92969 0.90413 0.91173 0.92223 0.90252 0.89832 0.93006 0.92844 0.96011 0.80350 0.93493 0.75774 0.67873 0.84205 0.87186 0.85543 0.86971 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 7.30 71.98 0.53 -3.48 16 2 C -0.09 -2.31 2.07 -10.79 -0.02 -2.33 16 3 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.10 -2.15 5.04 30.60 0.15 -1.99 16 5 C -0.11 -1.97 5.92 30.60 0.18 -1.79 16 6 C -0.11 -2.35 5.75 30.60 0.18 -2.17 16 7 C -0.12 -3.30 4.70 30.59 0.14 -3.16 16 8 C 0.18 5.80 0.32 3.60 0.00 5.80 16 9 C 0.13 5.72 4.43 86.38 0.38 6.11 16 10 N -0.75 -37.70 4.90 -343.47 -1.68 -39.38 16 11 C -0.22 -13.28 10.47 84.03 0.88 -12.40 16 12 H 0.05 3.54 8.06 -2.91 -0.02 3.51 16 13 C -0.06 -3.91 5.50 84.86 0.47 -3.45 16 14 N -0.98 -65.95 13.97 21.65 0.30 -65.65 16 15 Si 0.95 49.37 28.02 68.60 1.92 51.30 16 16 H -0.29 -15.49 7.11 99.48 0.71 -14.79 16 17 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 18 H -0.26 -12.09 6.14 99.48 0.61 -11.48 16 19 N -0.69 -22.35 3.50 -426.13 -1.49 -23.84 16 20 C 0.59 21.11 5.86 86.66 0.51 21.62 16 21 O -0.53 -20.78 8.34 -4.07 -0.03 -20.81 16 22 C -0.10 -3.08 6.99 40.41 0.28 -2.79 16 23 N -0.49 -13.35 11.07 -305.15 -3.38 -16.73 16 24 C 0.19 3.57 13.19 130.52 1.72 5.29 16 25 O -0.20 -4.47 10.55 0.35 0.00 -4.47 16 26 C 0.07 1.90 6.89 25.19 0.17 2.08 16 27 C -0.11 -2.84 5.67 -11.54 -0.07 -2.90 16 28 C -0.14 -2.45 10.18 30.62 0.31 -2.14 16 29 C -0.16 -3.78 10.24 30.62 0.31 -3.47 16 30 H 0.05 1.48 5.33 -2.39 -0.01 1.47 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.97 5.09 -2.39 -0.01 1.96 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.24 6.69 -2.39 -0.02 1.22 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.05 1.69 7.30 -2.39 -0.02 1.67 16 41 H 0.05 2.51 4.21 -2.39 -0.01 2.50 16 42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.36 17.83 4.34 -92.71 -0.40 17.43 16 44 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 45 H 0.41 12.16 6.80 -92.71 -0.63 11.53 16 46 H 0.31 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.14 4.13 6.55 -2.38 -0.02 4.12 16 48 H 0.11 1.73 8.04 -2.38 -0.02 1.71 16 49 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -79.50 387.18 1.62 -77.88 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: -0.16 Total: 42.88 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 6.13 Total: -1.18 kcal Atomic # 7 Polarization: -139.35 SS G_CDS: -6.25 Total: -145.60 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.03 Total: -25.27 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.92 Total: 51.30 kcal Total: -79.50 1.62 -77.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753535803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.058 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds