Wall clock time and date at job start Wed Apr 1 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47169 * 2 1 4 4 O 1.42904 * 109.47215 * 120.00092 * 2 1 3 5 5 C 1.35645 * 117.00030 * 85.30606 * 4 2 1 6 6 C 1.39354 * 120.54057 * 354.59589 * 5 4 2 7 7 C 1.38294 * 118.43792 * 179.97438 * 6 5 4 8 8 C 1.38769 * 119.44928 * 359.97438 * 7 6 5 9 9 N 1.31379 * 121.06413 * 0.02562 * 8 7 6 10 10 C 1.32858 * 121.69562 * 359.97438 * 9 8 7 11 11 C 1.47836 * 119.78188 * 179.97438 * 10 9 8 12 12 O 1.21555 * 119.99841 * 179.97438 * 11 10 9 13 13 N 1.34773 * 119.99776 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99981 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.42900 * 36.09183 * 14 13 11 16 16 C 1.54265 * 110.49051 * 273.55085 * 14 13 11 17 17 C 1.53875 * 106.59759 * 217.71154 * 16 14 13 18 18 C 1.54273 * 106.59858 * 359.97438 * 17 16 14 19 19 C 1.54886 * 104.19475 * 23.61312 * 18 17 16 20 20 H 1.08996 * 110.75962 * 80.37380 * 19 18 17 21 21 C 1.53007 * 110.75567 * 203.74543 * 19 18 17 22 22 N 1.46499 * 109.46515 * 288.32694 * 21 19 18 23 23 C 1.36944 * 119.99876 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99464 * 0.02562 * 23 22 21 25 25 C 1.38803 * 120.00108 * 180.02562 * 23 22 21 26 26 N 1.31618 * 119.99973 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99852 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47049 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.46900 * 120.00384 * 27 25 23 30 30 H 1.48506 * 109.46781 * 239.99653 * 27 25 23 31 31 H 1.09006 * 109.47092 * 59.99748 * 1 2 3 32 32 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46897 * 300.00185 * 1 2 3 34 34 H 1.09004 * 109.46897 * 239.99815 * 2 1 3 35 35 H 1.08998 * 109.46681 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46939 * 299.99833 * 3 2 1 37 37 H 1.08998 * 109.47004 * 60.00339 * 3 2 1 38 38 H 1.07998 * 120.77915 * 0.25358 * 6 5 4 39 39 H 1.08006 * 120.27799 * 180.02562 * 7 6 5 40 40 H 1.08000 * 119.46719 * 179.97438 * 8 7 6 41 41 H 0.96998 * 120.00168 * 0.02562 * 13 11 10 42 42 H 1.08998 * 110.03155 * 336.99263 * 16 14 13 43 43 H 1.08995 * 110.03126 * 98.37345 * 16 14 13 44 44 H 1.08996 * 110.03229 * 119.28110 * 17 16 14 45 45 H 1.09006 * 110.02848 * 240.71605 * 17 16 14 46 46 H 1.08997 * 110.48163 * 142.29438 * 18 17 16 47 47 H 1.09000 * 110.48525 * 264.93365 * 18 17 16 48 48 H 1.09000 * 109.47276 * 48.32302 * 21 19 18 49 49 H 1.08993 * 109.46888 * 168.32993 * 21 19 18 50 50 H 0.96999 * 120.00427 * 0.02562 * 22 21 19 51 51 H 0.97003 * 119.99942 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1184 -2.0236 1.0959 6 6 1.6739 -2.7128 -0.0308 7 6 1.8098 -4.0888 -0.0572 8 6 2.3800 -4.7391 1.0280 9 7 2.7921 -4.0686 2.0800 10 6 2.6829 -2.7465 2.1520 11 6 3.1602 -2.0348 3.3566 12 8 3.0627 -0.8251 3.4264 13 7 3.7035 -2.7271 4.3773 14 6 4.1770 -2.0217 5.5709 15 1 3.5257 -1.1776 5.7974 16 6 5.6309 -1.5446 5.3749 17 6 6.3384 -1.7228 6.7297 18 6 5.2895 -2.3014 7.7019 19 6 4.2538 -2.9889 6.7780 20 1 4.6080 -3.9707 6.4639 21 6 2.8951 -3.0978 7.4731 22 7 2.9683 -4.1068 8.5327 23 6 1.8647 -4.3788 9.2966 24 1 0.9404 -3.8498 9.1174 25 6 1.9342 -5.3344 10.3009 26 7 3.0606 -5.9794 10.5188 27 14 0.4285 -5.7059 11.3423 28 1 -0.7026 -4.8517 10.8996 29 1 0.0600 -7.1361 11.1871 30 1 0.7318 -5.4250 12.7687 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.2378 -2.1844 -0.8656 39 1 1.4757 -4.6527 -0.9157 40 1 2.4859 -5.8137 1.0079 41 1 3.7816 -3.6923 4.3215 42 1 6.1233 -2.1502 4.6141 43 1 5.6430 -0.4949 5.0817 44 1 7.1740 -2.4149 6.6264 45 1 6.6939 -0.7591 7.0948 46 1 5.7491 -3.0306 8.3690 47 1 4.8186 -1.5025 8.2747 48 1 2.6307 -2.1336 7.9072 49 1 2.1373 -3.3890 6.7458 50 1 3.7986 -4.5817 8.6938 51 1 3.1090 -6.6475 11.2204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753897647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:28 Heat of formation + Delta-G solvation = -38.538133 kcal Electronic energy + Delta-G solvation = -30789.191710 eV Core-core repulsion = 26688.673791 eV Total energy + Delta-G solvation = -4100.517919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21714 -39.53433 -38.73092 -37.65735 -34.37948 -33.73932 -33.45442 -32.49730 -31.32584 -30.55900 -28.50713 -27.72142 -27.49234 -24.98281 -24.40859 -23.82347 -22.08010 -21.60333 -20.94430 -20.10376 -19.58201 -18.66081 -17.79523 -17.25173 -16.89476 -16.14921 -15.96774 -15.44182 -15.03783 -14.97465 -14.70970 -14.42728 -14.34550 -14.19099 -13.67016 -13.52259 -13.33341 -13.11969 -13.08150 -12.85041 -12.78690 -12.64186 -12.59062 -12.26019 -12.04269 -11.82261 -11.38626 -11.19625 -11.16570 -10.87565 -10.83705 -10.67848 -10.38603 -10.25431 -10.20649 -10.14106 -10.11864 -9.89601 -9.67358 -9.59721 -8.84835 -8.80504 -8.61416 -6.83739 -5.70228 -2.97832 0.44234 0.93287 2.73646 2.78242 3.22005 3.47584 3.53359 3.55665 3.71740 4.06418 4.21003 4.35636 4.40161 4.50862 4.62205 4.64245 4.70029 4.81150 4.87448 4.94846 5.12871 5.14547 5.17952 5.28457 5.34638 5.40502 5.55628 5.57637 5.62025 5.64276 5.74065 5.74356 5.76016 5.81276 5.87248 5.92948 6.05718 6.08334 6.17569 6.29272 6.36688 6.42235 6.59492 6.65203 6.74605 6.89552 6.96829 7.01991 7.46105 7.77389 7.80528 8.40263 8.49161 9.60370 10.19116 10.54417 11.52908 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.002534 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.959588 B =11046.230426 C =11944.537031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 C -0.147 4.147 4 O -0.265 6.265 5 C 0.141 3.859 6 C -0.180 4.180 7 C -0.109 4.109 8 C 0.058 3.942 9 N -0.417 5.417 10 C 0.044 3.956 11 C 0.571 3.429 12 O -0.519 6.519 13 N -0.701 5.701 14 C 0.147 3.853 15 H 0.094 0.906 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.102 4.102 20 H 0.081 0.919 21 C 0.162 3.838 22 N -0.730 5.730 23 C -0.234 4.234 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.166 0.834 41 H 0.410 0.590 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.019 0.981 50 H 0.384 0.616 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 9.612 -27.561 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 C -0.204 4.204 4 O -0.175 6.175 5 C 0.090 3.910 6 C -0.207 4.207 7 C -0.129 4.129 8 C -0.103 4.103 9 N -0.129 5.129 10 C -0.095 4.095 11 C 0.355 3.645 12 O -0.394 6.394 13 N -0.352 5.352 14 C 0.042 3.958 15 H 0.112 0.888 16 C -0.171 4.171 17 C -0.160 4.160 18 C -0.149 4.149 19 C -0.121 4.121 20 H 0.100 0.900 21 C 0.034 3.966 22 N -0.375 5.375 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.183 0.817 41 H 0.246 0.754 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.036 0.964 50 H 0.217 0.783 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.313 10.272 -26.542 28.491 hybrid contribution -1.092 -0.711 -0.426 1.371 sum 0.221 9.561 -26.968 28.614 Atomic orbital electron populations 1.22399 0.94773 1.03051 1.03607 1.22608 0.94603 0.94379 0.87190 1.21821 1.02318 0.93055 1.03181 1.86486 1.78983 1.14466 1.37540 1.20020 0.92740 0.84585 0.93659 1.21785 1.04662 0.95575 0.98639 1.22210 0.96774 0.94120 0.99776 1.22728 0.97737 1.00755 0.89097 1.67641 1.13497 1.06103 1.25619 1.20784 1.03922 0.89376 0.95381 1.17587 0.78142 0.86601 0.82156 1.90819 1.55797 1.12831 1.79941 1.45875 1.60988 1.11548 1.16748 1.21920 0.94815 0.95582 0.83434 0.88808 1.22509 0.95335 1.01445 0.97762 1.22121 0.98338 1.00745 0.94834 1.22289 0.95440 1.00065 0.97062 1.22546 0.97428 0.98249 0.93859 0.90025 1.20643 0.92644 0.92852 0.90456 1.42337 1.12839 1.44648 1.37627 1.19285 0.90960 1.16445 1.09860 0.91259 1.24715 0.97123 0.99535 0.99767 1.69670 1.24808 1.28923 1.34949 0.86134 0.82299 0.77670 0.80233 1.20606 1.21943 1.21932 0.90816 0.92031 0.90911 0.91087 0.91503 0.90572 0.90968 0.83642 0.84014 0.81711 0.75411 0.91764 0.91592 0.91967 0.92028 0.90785 0.91219 0.96216 0.96367 0.78276 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.20 37.16 0.34 -0.90 16 2 C 0.07 0.56 2.85 -26.73 -0.08 0.48 16 3 C -0.15 -1.06 9.56 37.16 0.36 -0.70 16 4 O -0.26 -3.34 7.86 -40.58 -0.32 -3.66 16 5 C 0.14 1.72 6.62 -38.55 -0.26 1.46 16 6 C -0.18 -1.54 8.35 -39.15 -0.33 -1.87 16 7 C -0.11 -0.80 10.10 -39.36 -0.40 -1.20 16 8 C 0.06 0.53 11.17 -17.55 -0.20 0.34 16 9 N -0.42 -5.27 9.54 -9.71 -0.09 -5.36 16 10 C 0.04 0.62 6.76 -82.88 -0.56 0.06 16 11 C 0.57 9.21 7.80 -12.34 -0.10 9.11 16 12 O -0.52 -9.58 14.85 -16.63 -0.25 -9.82 16 13 N -0.70 -10.59 5.10 -53.15 -0.27 -10.87 16 14 C 0.15 2.27 2.60 -66.28 -0.17 2.10 16 15 H 0.09 1.59 7.57 -51.93 -0.39 1.20 16 16 C -0.13 -1.79 6.53 -25.61 -0.17 -1.95 16 17 C -0.12 -1.59 6.80 -25.61 -0.17 -1.77 16 18 C -0.11 -1.74 6.20 -25.07 -0.16 -1.90 16 19 C -0.10 -1.71 2.50 -88.64 -0.22 -1.93 16 20 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 21 C 0.16 3.42 5.70 -4.04 -0.02 3.40 16 22 N -0.73 -18.93 5.52 -59.91 -0.33 -19.26 16 23 C -0.23 -6.75 9.99 -15.06 -0.15 -6.90 16 24 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 25 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 26 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 27 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 6.98 -51.93 -0.36 0.06 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.45 6.32 -51.93 -0.33 0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.15 0.84 5.62 -52.49 -0.29 0.55 16 39 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.41 5.90 7.86 -40.82 -0.32 5.58 16 42 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.07 1.14 7.93 -51.93 -0.41 0.72 16 48 H 0.02 0.43 7.99 -51.93 -0.41 0.02 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.38 10.33 7.67 -40.82 -0.31 10.01 16 51 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 412.72 15.07 6.22 6.22 Total: -1.00 -34.70 412.72 -10.00 -44.70 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.29 Total: 10.80 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.37 Total: -2.73 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.03 Total: -63.44 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.57 Total: -13.48 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.70 -10.00 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.163 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds