Wall clock time and date at job start Wed Apr 1 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47169 * 2 1 4 4 O 1.42904 * 109.47215 * 120.00092 * 2 1 3 5 5 C 1.35645 * 117.00030 * 85.30606 * 4 2 1 6 6 C 1.39354 * 120.54057 * 354.59589 * 5 4 2 7 7 C 1.38294 * 118.43792 * 179.97438 * 6 5 4 8 8 C 1.38769 * 119.44928 * 359.97438 * 7 6 5 9 9 N 1.31379 * 121.06413 * 0.02562 * 8 7 6 10 10 C 1.32858 * 121.69562 * 359.97438 * 9 8 7 11 11 C 1.47836 * 119.78188 * 179.97438 * 10 9 8 12 12 O 1.21555 * 119.99841 * 179.97438 * 11 10 9 13 13 N 1.34773 * 119.99776 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99981 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.42900 * 36.09183 * 14 13 11 16 16 C 1.54265 * 110.49051 * 273.55085 * 14 13 11 17 17 C 1.53875 * 106.59759 * 217.71154 * 16 14 13 18 18 C 1.54273 * 106.59858 * 359.97438 * 17 16 14 19 19 C 1.54886 * 104.19475 * 23.61312 * 18 17 16 20 20 H 1.08996 * 110.75962 * 80.37380 * 19 18 17 21 21 C 1.53007 * 110.75567 * 203.74543 * 19 18 17 22 22 N 1.46499 * 109.46515 * 288.32694 * 21 19 18 23 23 C 1.36944 * 119.99876 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99464 * 0.02562 * 23 22 21 25 25 C 1.38803 * 120.00108 * 180.02562 * 23 22 21 26 26 N 1.31618 * 119.99973 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99852 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47049 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.46900 * 120.00384 * 27 25 23 30 30 H 1.48506 * 109.46781 * 239.99653 * 27 25 23 31 31 H 1.09006 * 109.47092 * 59.99748 * 1 2 3 32 32 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46897 * 300.00185 * 1 2 3 34 34 H 1.09004 * 109.46897 * 239.99815 * 2 1 3 35 35 H 1.08998 * 109.46681 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46939 * 299.99833 * 3 2 1 37 37 H 1.08998 * 109.47004 * 60.00339 * 3 2 1 38 38 H 1.07998 * 120.77915 * 0.25358 * 6 5 4 39 39 H 1.08006 * 120.27799 * 180.02562 * 7 6 5 40 40 H 1.08000 * 119.46719 * 179.97438 * 8 7 6 41 41 H 0.96998 * 120.00168 * 0.02562 * 13 11 10 42 42 H 1.08998 * 110.03155 * 336.99263 * 16 14 13 43 43 H 1.08995 * 110.03126 * 98.37345 * 16 14 13 44 44 H 1.08996 * 110.03229 * 119.28110 * 17 16 14 45 45 H 1.09006 * 110.02848 * 240.71605 * 17 16 14 46 46 H 1.08997 * 110.48163 * 142.29438 * 18 17 16 47 47 H 1.09000 * 110.48525 * 264.93365 * 18 17 16 48 48 H 1.09000 * 109.47276 * 48.32302 * 21 19 18 49 49 H 1.08993 * 109.46888 * 168.32993 * 21 19 18 50 50 H 0.96999 * 120.00427 * 0.02562 * 22 21 19 51 51 H 0.97003 * 119.99942 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1184 -2.0236 1.0959 6 6 1.6739 -2.7128 -0.0308 7 6 1.8098 -4.0888 -0.0572 8 6 2.3800 -4.7391 1.0280 9 7 2.7921 -4.0686 2.0800 10 6 2.6829 -2.7465 2.1520 11 6 3.1602 -2.0348 3.3566 12 8 3.0627 -0.8251 3.4264 13 7 3.7035 -2.7271 4.3773 14 6 4.1770 -2.0217 5.5709 15 1 3.5257 -1.1776 5.7974 16 6 5.6309 -1.5446 5.3749 17 6 6.3384 -1.7228 6.7297 18 6 5.2895 -2.3014 7.7019 19 6 4.2538 -2.9889 6.7780 20 1 4.6080 -3.9707 6.4639 21 6 2.8951 -3.0978 7.4731 22 7 2.9683 -4.1068 8.5327 23 6 1.8647 -4.3788 9.2966 24 1 0.9404 -3.8498 9.1174 25 6 1.9342 -5.3344 10.3009 26 7 3.0606 -5.9794 10.5188 27 14 0.4285 -5.7059 11.3423 28 1 -0.7026 -4.8517 10.8996 29 1 0.0600 -7.1361 11.1871 30 1 0.7318 -5.4250 12.7687 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.2378 -2.1844 -0.8656 39 1 1.4757 -4.6527 -0.9157 40 1 2.4859 -5.8137 1.0079 41 1 3.7816 -3.6923 4.3215 42 1 6.1233 -2.1502 4.6141 43 1 5.6430 -0.4949 5.0817 44 1 7.1740 -2.4149 6.6264 45 1 6.6939 -0.7591 7.0948 46 1 5.7491 -3.0306 8.3690 47 1 4.8186 -1.5025 8.2747 48 1 2.6307 -2.1336 7.9072 49 1 2.1373 -3.3890 6.7458 50 1 3.7986 -4.5817 8.6938 51 1 3.1090 -6.6475 11.2204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753897647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:27 Heat of formation + Delta-G solvation = -60.874630 kcal Electronic energy + Delta-G solvation = -30790.160293 eV Core-core repulsion = 26688.673791 eV Total energy + Delta-G solvation = -4101.486502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04998 -40.69952 -39.53055 -38.94632 -36.31656 -34.79256 -34.26371 -33.35414 -33.26081 -31.36214 -30.22024 -28.71432 -28.23397 -26.43784 -25.63606 -24.72193 -23.86547 -22.40478 -21.87411 -21.48197 -20.78833 -19.58039 -19.16762 -18.61030 -18.07543 -17.30934 -16.76942 -16.63484 -16.37681 -16.09118 -15.78917 -15.57435 -15.29355 -15.19949 -15.14816 -15.05380 -14.70087 -14.42601 -14.27238 -13.92976 -13.56853 -13.45228 -13.32092 -13.15686 -13.13348 -13.07948 -12.83758 -12.83221 -12.37128 -12.13484 -12.06416 -12.01110 -11.90320 -11.77684 -11.62882 -11.60098 -11.30578 -11.26317 -10.95259 -10.81632 -10.59261 -10.05392 -9.47805 -9.00795 -7.95982 -5.24720 -0.36149 0.21637 1.45944 1.46848 1.57236 1.75934 2.03985 2.14030 2.54715 2.82509 3.20174 3.36662 3.46146 3.55862 3.66000 3.72088 3.78123 3.89202 3.93474 4.03753 4.11910 4.12235 4.17434 4.39933 4.43078 4.48815 4.53081 4.56365 4.65028 4.65779 4.71112 4.74302 4.78237 4.83334 4.89338 4.94791 4.98626 5.01755 5.13121 5.20185 5.22544 5.22951 5.23827 5.28958 5.44903 5.45602 5.50347 5.60718 6.26360 6.27243 6.46628 6.82112 7.22105 7.33066 8.07007 8.33758 9.27522 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.002534 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.959588 B =11046.230426 C =11944.537031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 C -0.146 4.146 4 O -0.298 6.298 5 C 0.129 3.871 6 C -0.175 4.175 7 C -0.086 4.086 8 C 0.050 3.950 9 N -0.442 5.442 10 C 0.001 3.999 11 C 0.565 3.435 12 O -0.555 6.555 13 N -0.699 5.699 14 C 0.153 3.847 15 H 0.074 0.926 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.091 4.091 20 H 0.082 0.918 21 C 0.165 3.835 22 N -0.738 5.738 23 C -0.247 4.247 24 H 0.068 0.932 25 C -0.072 4.072 26 N -0.966 5.966 27 Si 0.973 3.027 28 H -0.270 1.270 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.177 0.823 39 H 0.189 0.811 40 H 0.193 0.807 41 H 0.412 0.588 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.014 0.986 49 H 0.008 0.992 50 H 0.377 0.623 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 9.072 -30.381 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 C -0.203 4.203 4 O -0.209 6.209 5 C 0.078 3.922 6 C -0.201 4.201 7 C -0.105 4.105 8 C -0.112 4.112 9 N -0.154 5.154 10 C -0.136 4.136 11 C 0.352 3.648 12 O -0.433 6.433 13 N -0.350 5.350 14 C 0.048 3.952 15 H 0.092 0.908 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.110 4.110 20 H 0.100 0.900 21 C 0.039 3.961 22 N -0.381 5.381 23 C -0.379 4.379 24 H 0.086 0.914 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.802 3.198 28 H -0.195 1.195 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.195 0.805 39 H 0.206 0.794 40 H 0.210 0.790 41 H 0.249 0.751 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.032 0.968 49 H 0.026 0.974 50 H 0.209 0.791 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.665 9.760 -29.374 30.960 hybrid contribution -0.958 -0.566 0.318 1.157 sum -0.294 9.194 -29.055 30.477 Atomic orbital electron populations 1.22382 0.93810 1.03208 1.03964 1.22947 0.95415 0.94494 0.86819 1.21863 1.01703 0.92965 1.03746 1.86456 1.79406 1.15085 1.39959 1.20223 0.92901 0.84710 0.94362 1.22173 1.03662 0.96220 0.98041 1.22724 0.93944 0.93751 1.00113 1.23381 0.96982 1.02065 0.88783 1.67555 1.14667 1.05665 1.27529 1.20475 1.07261 0.90285 0.95552 1.18056 0.77431 0.86433 0.82895 1.90774 1.57343 1.14260 1.80872 1.45853 1.60989 1.11599 1.16519 1.21764 0.95892 0.94430 0.83132 0.90804 1.22430 0.93758 1.01520 0.98408 1.22058 0.97621 1.01816 0.93321 1.22243 0.95797 0.99468 0.97215 1.22384 0.95289 0.98898 0.94442 0.89961 1.20688 0.95064 0.91143 0.89248 1.42466 1.11897 1.45404 1.38330 1.19617 0.91688 1.16354 1.10250 0.91364 1.25533 1.00095 0.99645 1.01165 1.69814 1.26734 1.29514 1.35595 0.85086 0.79102 0.77391 0.78248 1.19499 1.21694 1.21727 0.87972 0.91932 0.92997 0.88657 0.92497 0.87462 0.92873 0.80541 0.79390 0.78973 0.75095 0.90969 0.91493 0.90408 0.90343 0.91825 0.92101 0.96812 0.97428 0.79082 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 9.20 71.98 0.66 -1.50 16 2 C 0.06 0.89 2.85 30.59 0.09 0.98 16 3 C -0.15 -2.03 9.56 71.98 0.69 -1.35 16 4 O -0.30 -7.69 7.86 -68.60 -0.54 -8.23 16 5 C 0.13 3.11 6.62 22.94 0.15 3.26 16 6 C -0.17 -2.50 8.35 22.55 0.19 -2.31 16 7 C -0.09 -0.93 10.10 22.41 0.23 -0.70 16 8 C 0.05 0.81 11.17 84.89 0.95 1.76 16 9 N -0.44 -11.10 9.54 -184.62 -1.76 -12.86 16 10 C 0.00 0.02 6.76 41.93 0.28 0.30 16 11 C 0.57 19.33 7.80 86.78 0.68 20.00 16 12 O -0.55 -21.88 14.85 17.10 0.25 -21.62 16 13 N -0.70 -22.22 5.10 -440.35 -2.25 -24.47 16 14 C 0.15 4.90 2.60 46.06 0.12 5.02 16 15 H 0.07 2.67 7.57 -2.39 -0.02 2.65 16 16 C -0.12 -3.30 6.53 31.32 0.20 -3.09 16 17 C -0.11 -2.76 6.80 31.32 0.21 -2.54 16 18 C -0.11 -3.48 6.20 31.67 0.20 -3.28 16 19 C -0.09 -3.16 2.50 -9.51 -0.02 -3.19 16 20 H 0.08 2.87 8.02 -2.39 -0.02 2.85 16 21 C 0.17 7.29 5.70 86.38 0.49 7.78 16 22 N -0.74 -39.37 5.52 -343.45 -1.90 -41.27 16 23 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 24 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 26 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 27 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.74 6.98 -2.39 -0.02 0.73 16 33 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.10 0.94 6.32 -2.38 -0.02 0.92 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.18 1.31 5.62 -2.91 -0.02 1.29 16 39 H 0.19 0.31 8.06 -2.91 -0.02 0.28 16 40 H 0.19 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.41 12.47 7.86 -92.71 -0.73 11.74 16 42 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.01 0.63 7.99 -2.39 -0.02 0.61 16 49 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.38 20.91 7.67 -92.71 -0.71 20.19 16 51 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -78.65 412.72 2.05 -76.61 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.50 Total: 38.39 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.42 Total: 3.70 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -5.62 Total: -138.38 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.29 Total: -29.85 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -78.65 2.05 -76.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.730 kcal (2) G-P(sol) polarization free energy of solvation -78.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds