Wall clock time and date at job start Wed Apr 1 2020 05:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 O 1.42896 * 109.47141 * 120.00293 * 2 1 3 5 5 C 1.35920 * 117.00091 * 154.91596 * 4 2 1 6 6 C 1.38856 * 120.40452 * 185.36385 * 5 4 2 7 7 N 1.31878 * 120.99609 * 180.02562 * 6 5 4 8 8 C 1.31685 * 121.94763 * 359.97148 * 7 6 5 9 9 C 1.39533 * 120.68712 * 0.02562 * 8 7 6 10 10 C 1.47851 * 120.53159 * 179.97438 * 9 8 7 11 11 O 1.21543 * 120.00022 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99912 * 359.97438 * 10 9 8 13 13 C 1.46492 * 119.99901 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.67736 * 34.30074 * 13 12 10 15 15 C 1.54889 * 110.75485 * 271.06365 * 13 12 10 16 16 C 1.54470 * 104.10162 * 203.89810 * 15 13 12 17 17 C 1.53874 * 106.68755 * 23.33738 * 16 15 13 18 18 H 1.08998 * 110.07800 * 240.85490 * 17 16 15 19 19 C 1.53002 * 110.03139 * 119.44472 * 17 16 15 20 20 N 1.46502 * 109.46738 * 67.83674 * 19 17 16 21 21 C 1.36940 * 119.99402 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00099 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99486 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99887 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47588 * 89.99394 * 25 23 21 27 27 H 1.48504 * 109.47292 * 209.99812 * 25 23 21 28 28 H 1.48507 * 109.46840 * 329.99253 * 25 23 21 29 29 C 1.54267 * 106.59412 * 0.16357 * 17 16 15 30 30 C 1.38842 * 120.40427 * 5.08319 * 5 4 2 31 31 H 1.08995 * 109.46822 * 299.99744 * 1 2 3 32 32 H 1.08999 * 109.46916 * 59.99831 * 1 2 3 33 33 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46855 * 240.00551 * 2 1 3 35 35 H 1.09001 * 109.46825 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47400 * 299.99873 * 3 2 1 37 37 H 1.08998 * 109.47203 * 59.99914 * 3 2 1 38 38 H 1.07991 * 119.50068 * 359.97438 * 6 5 4 39 39 H 1.08001 * 119.65929 * 179.97438 * 8 7 6 40 40 H 0.96999 * 119.99785 * 0.02562 * 12 10 9 41 41 H 1.09003 * 110.48889 * 322.41709 * 15 13 12 42 42 H 1.08994 * 110.48980 * 85.06688 * 15 13 12 43 43 H 1.09006 * 109.85605 * 264.10011 * 16 15 13 44 44 H 1.08994 * 110.16928 * 142.75195 * 16 15 13 45 45 H 1.09000 * 109.47050 * 187.83736 * 19 17 16 46 46 H 1.08998 * 109.46886 * 307.83860 * 19 17 16 47 47 H 0.96991 * 120.00468 * 359.97438 * 20 19 17 48 48 H 0.97003 * 120.00096 * 180.02562 * 24 23 21 49 49 H 1.09002 * 110.48689 * 217.70451 * 29 17 16 50 50 H 1.09005 * 110.48969 * 95.06745 * 29 17 16 51 51 H 1.08002 * 120.88139 * 359.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2462 -1.2264 1.0972 6 6 3.7343 -1.9917 2.1479 7 7 4.9357 -2.5330 2.0930 8 6 5.7234 -2.3765 1.0495 9 6 5.3091 -1.6221 -0.0488 10 6 6.1966 -1.4482 -1.2184 11 8 5.8260 -0.7887 -2.1697 12 7 7.4169 -2.0202 -1.2293 13 6 8.2965 -1.8475 -2.3880 14 1 8.1622 -0.8599 -2.8293 15 6 8.0444 -2.9571 -3.4388 16 6 9.3668 -3.0300 -4.2338 17 6 10.4659 -2.4674 -3.3157 18 1 10.9226 -1.5898 -3.7732 19 6 11.5296 -3.5360 -3.0559 20 7 12.2569 -3.8128 -4.2971 21 6 13.2636 -4.7412 -4.3082 22 1 13.5210 -5.2695 -3.4021 23 6 13.9524 -5.0039 -5.4844 24 7 14.9202 -5.8958 -5.4950 25 14 13.5067 -4.0907 -7.0517 26 1 14.3149 -2.8486 -7.1479 27 1 13.7872 -4.9559 -8.2256 28 1 12.0634 -3.7415 -7.0278 29 6 9.7766 -2.0752 -1.9925 30 6 4.0377 -1.0375 -0.0278 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.1213 -2.1453 3.0236 39 1 6.7007 -2.8362 1.0439 40 1 7.7128 -2.5463 -0.4700 41 1 7.8435 -3.9092 -2.9476 42 1 7.2170 -2.6822 -4.0930 43 1 9.2893 -2.4253 -5.1375 44 1 9.5916 -4.0640 -4.4951 45 1 12.2268 -3.1780 -2.2983 46 1 11.0490 -4.4492 -2.7049 47 1 12.0255 -3.3387 -5.1109 48 1 15.4018 -6.0791 -6.3168 49 1 10.2103 -1.1582 -1.5935 50 1 9.8572 -2.8838 -1.2660 51 1 3.6833 -0.4513 -0.8628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755738447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:23 Heat of formation + Delta-G solvation = -38.141157 kcal Electronic energy + Delta-G solvation = -29656.925049 eV Core-core repulsion = 25556.424344 eV Total energy + Delta-G solvation = -4100.500705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44313 -40.09526 -38.92377 -38.10368 -35.09917 -33.98705 -33.62083 -32.77163 -31.37772 -30.65436 -29.04976 -28.05024 -27.87193 -25.28311 -24.40770 -24.23056 -21.94857 -21.72316 -21.33470 -20.79151 -19.45765 -19.04639 -17.65576 -17.42310 -17.34125 -17.04015 -16.22491 -16.10646 -15.67499 -15.20906 -14.93963 -14.64882 -14.53241 -14.40157 -13.96165 -13.86143 -13.54181 -13.35013 -13.11660 -13.05755 -12.91338 -12.80911 -12.75736 -12.43736 -12.26175 -12.05567 -11.68753 -11.61522 -11.44726 -11.37324 -10.97810 -10.91153 -10.73252 -10.53994 -10.43571 -10.28514 -10.27080 -9.99511 -9.92588 -9.58422 -9.29284 -8.98033 -8.88720 -7.22087 -5.76500 -3.11681 0.13477 0.69072 2.45787 2.48953 2.74592 3.35718 3.37683 3.40682 3.45641 3.83559 4.06139 4.17058 4.25362 4.31879 4.35646 4.45703 4.50150 4.54960 4.59576 4.69022 4.87322 4.90581 4.97692 5.11373 5.14893 5.17665 5.31540 5.37988 5.41932 5.44807 5.48197 5.49289 5.55097 5.56699 5.59209 5.67741 5.76904 5.80008 5.88861 5.99522 6.03728 6.17290 6.28040 6.39411 6.50795 6.66270 6.70174 6.80834 7.15211 7.34571 7.83273 8.00188 8.42739 9.22342 9.94799 10.14871 11.41976 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.001712 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.894845 B =16349.702035 C =17055.379177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.182 4.182 4 O -0.301 6.301 5 C 0.078 3.922 6 C 0.096 3.904 7 N -0.446 5.446 8 C 0.094 3.906 9 C -0.144 4.144 10 C 0.562 3.438 11 O -0.533 6.533 12 N -0.712 5.712 13 C 0.138 3.862 14 H 0.097 0.903 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.099 4.099 18 H 0.075 0.925 19 C 0.165 3.835 20 N -0.756 5.756 21 C -0.244 4.244 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.276 1.276 29 C -0.120 4.120 30 C -0.112 4.112 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.401 0.599 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.855 13.503 14.970 36.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 C -0.239 4.239 4 O -0.214 6.214 5 C 0.030 3.970 6 C -0.063 4.063 7 N -0.154 5.154 8 C -0.065 4.065 9 C -0.149 4.149 10 C 0.348 3.652 11 O -0.410 6.410 12 N -0.362 5.362 13 C 0.034 3.966 14 H 0.115 0.885 15 C -0.170 4.170 16 C -0.157 4.157 17 C -0.119 4.119 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.401 5.401 21 C -0.374 4.374 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.159 4.159 30 C -0.139 4.139 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.186 0.814 39 H 0.180 0.820 40 H 0.237 0.763 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -29.795 13.319 15.208 36.006 hybrid contribution -0.204 0.859 -1.803 2.007 sum -29.999 14.178 13.405 35.786 Atomic orbital electron populations 1.21858 0.91854 1.03410 1.03381 1.22582 0.95886 0.92857 0.87026 1.22395 1.02274 0.95658 1.03580 1.86164 1.28126 1.67890 1.39206 1.20067 0.86257 0.95363 0.95351 1.22460 0.92598 0.93685 0.97565 1.67754 1.03522 1.18754 1.25415 1.22898 0.99531 0.95713 0.88312 1.20889 0.95742 1.01568 0.96677 1.18006 0.81603 0.79453 0.86140 1.90783 1.74190 1.40062 1.35994 1.45958 1.15791 1.53141 1.21355 1.22144 0.88785 1.00270 0.85415 0.88489 1.22765 0.98306 0.98394 0.97551 1.22210 0.92907 1.02759 0.97825 1.21922 0.96101 0.99412 0.94443 0.90703 1.20719 0.91501 0.94385 0.89641 1.42717 1.41541 1.49012 1.06867 1.19069 1.07653 1.13499 0.97174 0.89272 1.24672 0.98143 0.98943 0.97435 1.69703 1.25079 1.36278 1.27211 0.86552 0.78012 0.79564 0.84451 1.21111 1.21757 1.20255 1.22606 0.92829 1.01985 0.98458 1.21888 0.93380 1.00188 0.98434 0.91239 0.90186 0.91465 0.90594 0.91819 0.90521 0.91151 0.81377 0.81999 0.76330 0.91287 0.91507 0.92065 0.90211 0.95611 0.95480 0.80636 0.93091 0.90907 0.90544 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.56 37.16 0.36 -0.24 16 2 C 0.07 0.42 2.85 -26.73 -0.08 0.34 16 3 C -0.18 -0.96 9.20 37.16 0.34 -0.61 16 4 O -0.30 -2.27 9.81 -19.49 -0.19 -2.46 16 5 C 0.08 0.64 6.62 -39.13 -0.26 0.38 16 6 C 0.10 0.77 11.13 -17.30 -0.19 0.57 16 7 N -0.45 -4.03 10.34 -12.79 -0.13 -4.17 16 8 C 0.09 0.77 10.71 -17.13 -0.18 0.58 16 9 C -0.14 -1.34 5.89 -104.84 -0.62 -1.96 16 10 C 0.56 6.16 7.78 -12.32 -0.10 6.06 16 11 O -0.53 -7.59 16.10 5.33 0.09 -7.51 16 12 N -0.71 -6.57 5.15 -52.82 -0.27 -6.84 16 13 C 0.14 1.49 3.21 -65.94 -0.21 1.28 16 14 H 0.10 1.17 7.62 -51.93 -0.40 0.78 16 15 C -0.13 -1.57 6.53 -24.96 -0.16 -1.74 16 16 C -0.12 -1.67 6.19 -25.51 -0.16 -1.83 16 17 C -0.10 -1.41 2.96 -89.50 -0.27 -1.68 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 19 C 0.16 3.04 5.27 -4.04 -0.02 3.02 16 20 N -0.76 -17.72 5.19 -59.91 -0.31 -18.03 16 21 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 22 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 24 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 25 Si 0.88 22.15 27.74 -169.99 -4.71 17.44 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 29 C -0.12 -1.30 5.98 -25.07 -0.15 -1.45 16 30 C -0.11 -1.00 7.89 -38.72 -0.31 -1.31 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.44 6.32 -51.93 -0.33 0.12 16 35 H 0.06 0.41 6.97 -51.93 -0.36 0.05 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.16 0.91 6.42 -52.49 -0.34 0.57 16 40 H 0.40 2.66 6.61 -40.82 -0.27 2.39 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.29 7.61 -51.93 -0.40 0.89 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.36 8.29 5.41 -40.82 -0.22 8.07 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 51 H 0.15 1.34 5.28 -52.49 -0.28 1.06 16 LS Contribution 408.85 15.07 6.16 6.16 Total: -1.00 -34.42 408.85 -8.93 -43.35 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.07 Total: 6.34 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.26 Total: -5.62 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.06 Total: -57.70 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.11 Total: -9.97 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.42 -8.93 -43.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755738447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.208 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds