Wall clock time and date at job start Wed Apr 1 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 O 1.42896 * 109.47141 * 120.00293 * 2 1 3 5 5 C 1.35920 * 117.00091 * 154.91596 * 4 2 1 6 6 C 1.38856 * 120.40452 * 185.36385 * 5 4 2 7 7 N 1.31878 * 120.99609 * 180.02562 * 6 5 4 8 8 C 1.31685 * 121.94763 * 359.97148 * 7 6 5 9 9 C 1.39533 * 120.68712 * 0.02562 * 8 7 6 10 10 C 1.47851 * 120.53159 * 179.97438 * 9 8 7 11 11 O 1.21543 * 120.00022 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99912 * 359.97438 * 10 9 8 13 13 C 1.46492 * 119.99901 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.67736 * 34.30074 * 13 12 10 15 15 C 1.54889 * 110.75485 * 271.06365 * 13 12 10 16 16 C 1.54470 * 104.10162 * 203.89810 * 15 13 12 17 17 C 1.53874 * 106.68755 * 23.33738 * 16 15 13 18 18 H 1.08998 * 110.07800 * 240.85490 * 17 16 15 19 19 C 1.53002 * 110.03139 * 119.44472 * 17 16 15 20 20 N 1.46502 * 109.46738 * 67.83674 * 19 17 16 21 21 C 1.36940 * 119.99402 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00099 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99486 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99887 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47588 * 89.99394 * 25 23 21 27 27 H 1.48504 * 109.47292 * 209.99812 * 25 23 21 28 28 H 1.48507 * 109.46840 * 329.99253 * 25 23 21 29 29 C 1.54267 * 106.59412 * 0.16357 * 17 16 15 30 30 C 1.38842 * 120.40427 * 5.08319 * 5 4 2 31 31 H 1.08995 * 109.46822 * 299.99744 * 1 2 3 32 32 H 1.08999 * 109.46916 * 59.99831 * 1 2 3 33 33 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46855 * 240.00551 * 2 1 3 35 35 H 1.09001 * 109.46825 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47400 * 299.99873 * 3 2 1 37 37 H 1.08998 * 109.47203 * 59.99914 * 3 2 1 38 38 H 1.07991 * 119.50068 * 359.97438 * 6 5 4 39 39 H 1.08001 * 119.65929 * 179.97438 * 8 7 6 40 40 H 0.96999 * 119.99785 * 0.02562 * 12 10 9 41 41 H 1.09003 * 110.48889 * 322.41709 * 15 13 12 42 42 H 1.08994 * 110.48980 * 85.06688 * 15 13 12 43 43 H 1.09006 * 109.85605 * 264.10011 * 16 15 13 44 44 H 1.08994 * 110.16928 * 142.75195 * 16 15 13 45 45 H 1.09000 * 109.47050 * 187.83736 * 19 17 16 46 46 H 1.08998 * 109.46886 * 307.83860 * 19 17 16 47 47 H 0.96991 * 120.00468 * 359.97438 * 20 19 17 48 48 H 0.97003 * 120.00096 * 180.02562 * 24 23 21 49 49 H 1.09002 * 110.48689 * 217.70451 * 29 17 16 50 50 H 1.09005 * 110.48969 * 95.06745 * 29 17 16 51 51 H 1.08002 * 120.88139 * 359.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2462 -1.2264 1.0972 6 6 3.7343 -1.9917 2.1479 7 7 4.9357 -2.5330 2.0930 8 6 5.7234 -2.3765 1.0495 9 6 5.3091 -1.6221 -0.0488 10 6 6.1966 -1.4482 -1.2184 11 8 5.8260 -0.7887 -2.1697 12 7 7.4169 -2.0202 -1.2293 13 6 8.2965 -1.8475 -2.3880 14 1 8.1622 -0.8599 -2.8293 15 6 8.0444 -2.9571 -3.4388 16 6 9.3668 -3.0300 -4.2338 17 6 10.4659 -2.4674 -3.3157 18 1 10.9226 -1.5898 -3.7732 19 6 11.5296 -3.5360 -3.0559 20 7 12.2569 -3.8128 -4.2971 21 6 13.2636 -4.7412 -4.3082 22 1 13.5210 -5.2695 -3.4021 23 6 13.9524 -5.0039 -5.4844 24 7 14.9202 -5.8958 -5.4950 25 14 13.5067 -4.0907 -7.0517 26 1 14.3149 -2.8486 -7.1479 27 1 13.7872 -4.9559 -8.2256 28 1 12.0634 -3.7415 -7.0278 29 6 9.7766 -2.0752 -1.9925 30 6 4.0377 -1.0375 -0.0278 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.1213 -2.1453 3.0236 39 1 6.7007 -2.8362 1.0439 40 1 7.7128 -2.5463 -0.4700 41 1 7.8435 -3.9092 -2.9476 42 1 7.2170 -2.6822 -4.0930 43 1 9.2893 -2.4253 -5.1375 44 1 9.5916 -4.0640 -4.4951 45 1 12.2268 -3.1780 -2.2983 46 1 11.0490 -4.4492 -2.7049 47 1 12.0255 -3.3387 -5.1109 48 1 15.4018 -6.0791 -6.3168 49 1 10.2103 -1.1582 -1.5935 50 1 9.8572 -2.8838 -1.2660 51 1 3.6833 -0.4513 -0.8628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755738447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:22 Heat of formation + Delta-G solvation = -61.154297 kcal Electronic energy + Delta-G solvation = -29657.922973 eV Core-core repulsion = 25556.424344 eV Total energy + Delta-G solvation = -4101.498629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09542 -40.89742 -39.62522 -39.09268 -36.60877 -35.01680 -34.34470 -33.60307 -33.15198 -31.38681 -30.30830 -29.11177 -28.25460 -26.45833 -25.40809 -24.99662 -23.72534 -22.30972 -22.10945 -21.68540 -20.69494 -19.80857 -19.46032 -18.21437 -17.92852 -17.72569 -17.18202 -16.76343 -16.66670 -16.45090 -16.03091 -15.78517 -15.48425 -15.25774 -15.08193 -14.78107 -14.58508 -14.47776 -14.26097 -13.99457 -13.81410 -13.56793 -13.41983 -13.36238 -13.15265 -13.03491 -12.88697 -12.88241 -12.53434 -12.13528 -12.05904 -12.01220 -11.85305 -11.80993 -11.75584 -11.61193 -11.54327 -11.28063 -10.96593 -10.94739 -10.65184 -10.15388 -9.58183 -9.26957 -8.02204 -5.34786 -0.54169 0.06249 1.37929 1.40870 1.48338 1.69225 1.90847 1.99905 2.48727 2.68694 3.21348 3.29465 3.46113 3.52467 3.58149 3.66679 3.70290 3.75166 3.79479 3.83909 3.92656 4.03368 4.07792 4.28890 4.36339 4.44891 4.50201 4.56204 4.63370 4.64622 4.70514 4.73544 4.75514 4.80475 4.82366 4.85630 4.92824 5.01137 5.11882 5.14423 5.16294 5.21485 5.22203 5.23999 5.38493 5.45775 5.55348 5.77277 6.11092 6.22216 6.40134 6.72211 7.04844 7.09587 7.87069 8.05418 9.19378 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.001712 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.894845 B =16349.702035 C =17055.379177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.179 4.179 4 O -0.307 6.307 5 C 0.076 3.924 6 C 0.097 3.903 7 N -0.462 5.462 8 C 0.098 3.902 9 C -0.155 4.155 10 C 0.564 3.436 11 O -0.571 6.571 12 N -0.699 5.699 13 C 0.146 3.854 14 H 0.088 0.912 15 C -0.125 4.125 16 C -0.118 4.118 17 C -0.092 4.092 18 H 0.076 0.924 19 C 0.161 3.839 20 N -0.758 5.758 21 C -0.234 4.234 22 H 0.057 0.943 23 C -0.065 4.065 24 N -0.984 5.984 25 Si 0.953 3.047 26 H -0.278 1.278 27 H -0.297 1.297 28 H -0.251 1.251 29 C -0.109 4.109 30 C -0.118 4.118 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.189 0.811 39 H 0.187 0.813 40 H 0.416 0.584 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.365 0.635 48 H 0.257 0.743 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.782 14.927 15.643 38.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 C -0.236 4.236 4 O -0.220 6.220 5 C 0.028 3.972 6 C -0.062 4.062 7 N -0.170 5.170 8 C -0.060 4.060 9 C -0.160 4.160 10 C 0.351 3.649 11 O -0.451 6.451 12 N -0.350 5.350 13 C 0.042 3.958 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.156 4.156 17 C -0.112 4.112 18 H 0.094 0.906 19 C 0.035 3.965 20 N -0.404 5.404 21 C -0.365 4.365 22 H 0.075 0.925 23 C -0.256 4.256 24 N -0.635 5.635 25 Si 0.781 3.219 26 H -0.204 1.204 27 H -0.224 1.224 28 H -0.175 1.175 29 C -0.147 4.147 30 C -0.145 4.145 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.206 0.794 39 H 0.204 0.796 40 H 0.254 0.746 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.198 0.802 48 H 0.066 0.934 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -31.757 14.756 15.936 38.474 hybrid contribution 0.355 0.383 -1.894 1.965 sum -31.402 15.140 14.041 37.583 Atomic orbital electron populations 1.21877 0.90414 1.03618 1.04281 1.22776 0.96983 0.92847 0.86351 1.22379 1.01307 0.95568 1.04374 1.86162 1.27736 1.67962 1.40093 1.20100 0.86498 0.95491 0.95158 1.22838 0.92513 0.92819 0.98022 1.67828 1.04051 1.19368 1.25748 1.23246 1.00296 0.94920 0.87516 1.20794 0.95754 1.02811 0.96630 1.18211 0.81875 0.78759 0.86014 1.90766 1.75015 1.41847 1.37450 1.45793 1.15081 1.52783 1.21350 1.21929 0.88998 0.99333 0.85580 0.89393 1.22686 0.96944 0.99099 0.97591 1.22155 0.93912 1.01279 0.98295 1.21825 0.95012 0.97819 0.96520 0.90563 1.20915 0.92187 0.95757 0.87617 1.42746 1.40831 1.47974 1.08860 1.19072 1.08176 1.13336 0.95908 0.92512 1.25502 0.98475 1.00383 1.01253 1.69886 1.26900 1.38633 1.28082 0.85430 0.79147 0.78009 0.79361 1.20441 1.22353 1.17542 1.22526 0.92154 1.03231 0.96818 1.21957 0.93591 1.00201 0.98711 0.90970 0.88649 0.91600 0.90958 0.93259 0.89218 0.90867 0.79374 0.79583 0.74585 0.90763 0.92025 0.91884 0.92468 0.95555 0.95595 0.80150 0.93407 0.89287 0.89131 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.56 71.98 0.69 -0.28 16 2 C 0.07 0.71 2.85 30.59 0.09 0.79 16 3 C -0.18 -1.74 9.20 71.98 0.66 -1.08 16 4 O -0.31 -4.34 9.81 -92.65 -0.91 -5.25 16 5 C 0.08 1.17 6.62 22.56 0.15 1.32 16 6 C 0.10 1.39 11.13 84.83 0.94 2.34 16 7 N -0.46 -7.50 10.34 -194.39 -2.01 -9.51 16 8 C 0.10 1.41 10.71 85.03 0.91 2.33 16 9 C -0.15 -2.70 5.89 -20.00 -0.12 -2.81 16 10 C 0.56 11.63 7.78 86.79 0.68 12.30 16 11 O -0.57 -15.94 16.10 -3.85 -0.06 -16.00 16 12 N -0.70 -11.29 5.15 -439.32 -2.26 -13.56 16 13 C 0.15 2.84 3.21 46.28 0.15 2.99 16 14 H 0.09 1.95 7.62 -2.39 -0.02 1.93 16 15 C -0.12 -2.76 6.53 31.74 0.21 -2.55 16 16 C -0.12 -3.13 6.19 31.39 0.19 -2.93 16 17 C -0.09 -2.43 2.96 -10.07 -0.03 -2.46 16 18 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 19 C 0.16 5.73 5.27 86.38 0.46 6.19 16 20 N -0.76 -34.88 5.19 -343.44 -1.78 -36.66 16 21 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 22 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 23 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.98 -63.41 13.97 21.65 0.30 -63.10 16 25 Si 0.95 45.61 27.74 68.60 1.90 47.52 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 28 H -0.25 -10.80 6.52 99.48 0.65 -10.16 16 29 C -0.11 -2.03 5.98 31.67 0.19 -1.85 16 30 C -0.12 -2.04 7.89 22.83 0.18 -1.86 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.82 6.32 -2.39 -0.02 0.80 16 35 H 0.05 0.62 6.97 -2.39 -0.02 0.61 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.19 1.79 8.06 -2.92 -0.02 1.77 16 39 H 0.19 1.54 6.42 -2.91 -0.02 1.52 16 40 H 0.42 4.24 6.61 -92.71 -0.61 3.63 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.06 1.78 7.61 -2.39 -0.02 1.76 16 45 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.37 16.10 5.41 -92.71 -0.50 15.60 16 48 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 49 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.09 1.48 7.73 -2.38 -0.02 1.46 16 51 H 0.15 2.64 5.28 -2.91 -0.02 2.62 16 Total: -1.00 -75.18 408.85 1.65 -73.54 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.22 Total: 26.44 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 6.69 Total: -3.41 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -5.75 Total: -122.83 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.97 Total: -21.24 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.52 kcal Total: -75.18 1.65 -73.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755738447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.381 kcal (2) G-P(sol) polarization free energy of solvation -75.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds