Wall clock time and date at job start Wed Apr 1 2020 04:30:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50702 * 109.46871 * 2 1
4 4 N 1.27946 * 120.00252 * 24.99380 * 3 2 1
5 5 Si 1.86805 * 119.99869 * 204.99779 * 3 2 1
6 6 H 1.48498 * 109.46968 * 89.99415 * 5 3 2
7 7 H 1.48494 * 109.47232 * 209.99748 * 5 3 2
8 8 H 1.48505 * 109.46753 * 329.99841 * 5 3 2
9 9 C 1.50698 * 109.46778 * 119.99284 * 2 1 3
10 10 O 1.21288 * 120.00384 * 239.99819 * 9 2 1
11 11 N 1.34777 * 120.00092 * 60.00458 * 9 2 1
12 12 C 1.46491 * 120.00315 * 179.97438 * 11 9 2
13 13 H 1.09004 * 109.47469 * 35.00056 * 12 11 9
14 14 C 1.53001 * 109.47423 * 155.00092 * 12 11 9
15 15 N 1.46504 * 109.46929 * 305.00504 * 14 12 11
16 16 C 1.34777 * 119.99850 * 180.02562 * 15 14 12
17 17 O 1.21778 * 120.00126 * 359.97438 * 16 15 14
18 18 C 1.41516 * 119.99652 * 179.97438 * 16 15 14
19 19 C 1.35620 * 119.99828 * 188.37856 * 18 16 15
20 20 C 1.41674 * 120.00196 * 32.27983 * 19 18 16
21 21 C 1.38274 * 126.26008 * 187.25494 * 20 19 18
22 22 C 1.39792 * 107.07893 * 179.97438 * 21 20 19
23 23 C 1.35504 * 107.90588 * 359.74048 * 22 21 20
24 24 N 1.35750 * 108.91073 * 0.42787 * 23 22 21
25 25 H 0.96999 * 125.68731 * 179.82657 * 24 23 22
26 26 C 1.53005 * 109.47474 * 274.99911 * 12 11 9
27 27 C 1.52995 * 109.46962 * 300.00242 * 26 12 11
28 28 C 1.53002 * 109.46596 * 60.00095 * 26 12 11
29 29 C 1.52998 * 109.47171 * 179.97438 * 26 12 11
30 30 H 1.09008 * 109.47032 * 60.00496 * 1 2 3
31 31 H 1.09000 * 109.47156 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47718 * 300.00766 * 1 2 3
33 33 H 1.08993 * 109.47528 * 239.99698 * 2 1 3
34 34 H 0.97000 * 119.99521 * 180.02562 * 4 3 2
35 35 H 0.97002 * 119.99813 * 0.02562 * 11 9 2
36 36 H 1.08996 * 109.47439 * 185.00210 * 14 12 11
37 37 H 1.09005 * 109.47370 * 64.99870 * 14 12 11
38 38 H 0.97000 * 119.99965 * 359.97438 * 15 14 12
39 39 H 1.08000 * 120.00264 * 8.37469 * 18 16 15
40 40 H 1.08005 * 119.99975 * 212.27906 * 19 18 16
41 41 H 1.07997 * 126.46357 * 359.95951 * 21 20 19
42 42 H 1.07996 * 126.04523 * 179.97438 * 22 21 20
43 43 H 1.08003 * 125.54631 * 180.25984 * 23 22 21
44 44 H 1.08994 * 109.47404 * 59.99743 * 27 26 12
45 45 H 1.09007 * 109.46738 * 179.97438 * 27 26 12
46 46 H 1.08997 * 109.47390 * 299.99381 * 27 26 12
47 47 H 1.08994 * 109.47254 * 60.00369 * 28 26 12
48 48 H 1.09007 * 109.46931 * 179.97438 * 28 26 12
49 49 H 1.08994 * 109.47154 * 299.99880 * 28 26 12
50 50 H 1.09006 * 109.46949 * 60.00497 * 29 26 12
51 51 H 1.09000 * 109.47289 * 180.02562 * 29 26 12
52 52 H 1.08994 * 109.47663 * 300.00234 * 29 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 7 1.2986 2.3588 0.4682
5 14 3.7260 1.8128 -0.6837
6 1 3.6169 2.1136 -2.1337
7 1 4.2856 2.9911 0.0257
8 1 4.6217 0.6448 -0.4864
9 6 2.0322 -0.7103 1.2306
10 8 2.7295 -0.1208 2.0289
11 7 1.7067 -2.0006 1.4440
12 6 2.1953 -2.6912 2.6399
13 1 2.2323 -1.9909 3.4743
14 6 1.2514 -3.8451 2.9840
15 7 -0.1147 -3.3340 3.1217
16 6 -1.1220 -4.1765 3.4252
17 8 -0.8967 -5.3626 3.5846
18 6 -2.4414 -3.6826 3.5588
19 6 -3.4238 -4.4912 4.0283
20 6 -3.1200 -5.4960 4.9797
21 6 -3.9815 -6.4757 5.4379
22 6 -3.2711 -7.2479 6.3616
23 6 -2.0158 -6.7447 6.4474
24 7 -1.9126 -5.6759 5.6168
25 1 -1.1194 -5.1322 5.4902
26 6 3.5978 -3.2418 2.3737
27 6 3.5459 -4.2249 1.2024
28 6 4.5418 -2.0879 2.0296
29 6 4.1084 -3.9626 3.6229
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8899
33 1 1.8934 -0.5138 -0.8899
34 1 1.6219 3.2733 0.4678
35 1 1.1494 -2.4722 0.8052
36 1 1.5643 -4.3031 3.9223
37 1 1.2822 -4.5895 2.1883
38 1 -0.2941 -2.3892 2.9952
39 1 -2.6661 -2.6618 3.2868
40 1 -4.4378 -4.3691 3.6770
41 1 -5.0095 -6.6175 5.1388
42 1 -3.6537 -8.0977 6.9072
43 1 -1.2267 -7.1294 7.0764
44 1 3.1823 -3.7110 0.3126
45 1 4.5452 -4.6168 1.0125
46 1 2.8734 -5.0469 1.4475
47 1 4.5787 -1.3876 2.8640
48 1 5.5411 -2.4801 1.8404
49 1 4.1782 -1.5741 1.1398
50 1 3.4359 -4.7846 3.8684
51 1 5.1077 -4.3545 3.4335
52 1 4.1454 -3.2620 4.4571
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001756720646.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:40
Heat of formation + Delta-G solvation = 25.746179 kcal
Electronic energy + Delta-G solvation = -32206.131775 eV
Core-core repulsion = 28094.745694 eV
Total energy + Delta-G solvation = -4111.386081 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 348.207 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.23516 -41.72132 -40.45667 -39.02682 -36.99436 -35.80858 -34.72868 -34.64921
-32.84696 -31.76311 -30.44911 -28.85230 -28.36050 -27.93860 -26.45516 -25.33410
-23.63234 -22.60750 -21.82848 -21.19929 -20.79905 -20.48861 -19.79323 -19.02631
-18.24276 -17.76948 -17.69390 -17.35935 -16.85783 -16.36999 -16.00936 -15.39411
-15.37784 -15.24422 -15.07437 -14.98197 -14.90943 -14.76185 -14.61778 -14.31361
-14.14913 -13.94695 -13.70640 -13.42770 -13.30017 -13.14950 -13.12750 -13.05157
-12.99382 -12.84646 -12.66276 -12.54777 -12.43827 -12.25784 -12.21047 -11.75411
-11.62474 -11.53906 -11.04071 -10.73542 -10.71113 -10.18196 -10.10486 -9.91299
-9.65421 -8.42633 -0.45890 0.73555 1.03444 1.37128 1.56073 1.59217
1.71786 1.85805 2.05744 2.08634 2.27272 2.48515 2.61190 3.31064
3.38311 3.64142 3.73978 3.81904 3.93743 4.00637 4.03289 4.08513
4.11471 4.12620 4.33110 4.36315 4.46628 4.51656 4.51872 4.55558
4.62094 4.63256 4.67027 4.76938 4.81844 4.82833 4.93453 4.95449
4.99175 5.02476 5.06736 5.09158 5.13737 5.24032 5.26736 5.34949
5.39641 5.43000 5.44578 5.49468 6.07131 6.24882 6.33810 6.44907
6.73363 6.81330 7.12646 7.20731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.085 4.085
3 C 0.015 3.985
4 N -0.617 5.617
5 Si 0.934 3.066
6 H -0.242 1.242
7 H -0.244 1.244
8 H -0.233 1.233
9 C 0.529 3.471
10 O -0.522 6.522
11 N -0.725 5.725
12 C 0.145 3.855
13 H 0.097 0.903
14 C 0.107 3.893
15 N -0.730 5.730
16 C 0.547 3.453
17 O -0.552 6.552
18 C -0.307 4.307
19 C 0.064 3.936
20 C -0.006 4.006
21 C -0.135 4.135
22 C -0.217 4.217
23 C 0.028 3.972
24 N -0.511 5.511
25 H 0.417 0.583
26 C -0.075 4.075
27 C -0.147 4.147
28 C -0.134 4.134
29 C -0.146 4.146
30 H 0.069 0.931
31 H 0.058 0.942
32 H 0.073 0.927
33 H 0.114 0.886
34 H 0.340 0.660
35 H 0.403 0.597
36 H 0.084 0.916
37 H 0.080 0.920
38 H 0.403 0.597
39 H 0.135 0.865
40 H 0.147 0.853
41 H 0.143 0.857
42 H 0.139 0.861
43 H 0.165 0.835
44 H 0.056 0.944
45 H 0.059 0.941
46 H 0.059 0.941
47 H 0.064 0.936
48 H 0.050 0.950
49 H 0.054 0.946
50 H 0.059 0.941
51 H 0.062 0.938
52 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.555 0.229 -2.350 2.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.107 4.107
3 C -0.235 4.235
4 N -0.229 5.229
5 Si 0.750 3.250
6 H -0.165 1.165
7 H -0.167 1.167
8 H -0.155 1.155
9 C 0.314 3.686
10 O -0.397 6.397
11 N -0.378 5.378
12 C 0.040 3.960
13 H 0.115 0.885
14 C -0.017 4.017
15 N -0.381 5.381
16 C 0.341 3.659
17 O -0.434 6.434
18 C -0.329 4.329
19 C 0.044 3.956
20 C -0.116 4.116
21 C -0.161 4.161
22 C -0.241 4.241
23 C -0.111 4.111
24 N -0.107 5.107
25 H 0.259 0.741
26 C -0.077 4.077
27 C -0.204 4.204
28 C -0.192 4.192
29 C -0.204 4.204
30 H 0.089 0.911
31 H 0.077 0.923
32 H 0.093 0.907
33 H 0.131 0.869
34 H 0.158 0.842
35 H 0.238 0.762
36 H 0.102 0.898
37 H 0.098 0.902
38 H 0.237 0.763
39 H 0.153 0.847
40 H 0.165 0.835
41 H 0.160 0.840
42 H 0.157 0.843
43 H 0.183 0.817
44 H 0.075 0.925
45 H 0.078 0.922
46 H 0.078 0.922
47 H 0.083 0.917
48 H 0.069 0.931
49 H 0.073 0.927
50 H 0.078 0.922
51 H 0.081 0.919
52 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 0.152 0.223 -1.600 1.622
hybrid contribution 0.524 0.818 -0.684 1.188
sum 0.675 1.041 -2.283 2.599
Atomic orbital electron populations
1.21620 0.90976 1.01876 1.04451 1.20595 0.99229 0.93238 0.97622
1.29646 1.03578 0.95505 0.94751 1.68055 1.37960 1.05478 1.11428
0.85688 0.75797 0.82987 0.80569 1.16542 1.16694 1.15518 1.20222
0.79759 0.81417 0.87179 1.90734 1.36690 1.65910 1.46362 1.46029
1.54137 1.11956 1.25653 1.21286 0.92635 0.93517 0.88541 0.88457
1.21813 0.80741 0.96058 1.03113 1.46008 1.07432 1.11826 1.72884
1.17212 0.85332 0.86225 0.77129 1.90887 1.84901 1.15730 1.51875
1.21733 0.93470 1.01558 1.16118 1.20879 0.99741 0.88065 0.86949
1.18234 0.87036 1.03442 1.02920 1.21574 0.99452 0.95454 0.99635
1.20885 0.94154 1.03996 1.05047 1.22167 0.99461 0.90937 0.98517
1.42596 1.11982 1.24527 1.31565 0.74110 1.20897 0.93932 0.96340
0.96489 1.21962 1.02404 0.98559 0.97452 1.21923 0.97914 0.96941
1.02381 1.21945 1.01622 1.00189 0.96617 0.91150 0.92338 0.90748
0.86856 0.84246 0.76235 0.89827 0.90178 0.76263 0.84701 0.83506
0.83964 0.84274 0.81728 0.92491 0.92186 0.92225 0.91659 0.93091
0.92721 0.92216 0.91923 0.92248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 0.35 8.58 37.16 0.32 0.67 16
2 C -0.08 0.16 2.66 -92.92 -0.25 -0.08 16
3 C 0.02 0.00 4.17 -13.90 -0.06 -0.06 16
4 N -0.62 -0.54 12.70 56.23 0.71 0.17 16
5 Si 0.93 -0.31 29.14 -169.99 -4.95 -5.27 16
6 H -0.24 0.11 7.11 56.52 0.40 0.51 16
7 H -0.24 -0.23 7.11 56.52 0.40 0.17 16
8 H -0.23 -0.09 7.11 56.52 0.40 0.31 16
9 C 0.53 -0.31 5.42 -10.99 -0.06 -0.37 16
10 O -0.52 -1.46 12.87 5.55 0.07 -1.39 16
11 N -0.72 2.04 3.53 -53.81 -0.19 1.85 16
12 C 0.15 -0.29 1.69 -67.93 -0.11 -0.41 16
13 H 0.10 -0.04 7.58 -51.93 -0.39 -0.43 16
14 C 0.11 -0.21 4.51 -4.04 -0.02 -0.23 16
15 N -0.73 1.33 5.38 -63.25 -0.34 0.99 16
16 C 0.55 0.41 6.32 -15.01 -0.09 0.31 16
17 O -0.55 -2.21 12.73 5.12 0.07 -2.14 16
18 C -0.31 0.14 9.72 -39.27 -0.38 -0.24 16
19 C 0.06 0.01 9.76 -39.21 -0.38 -0.37 16
20 C -0.01 -0.01 5.95 -83.91 -0.50 -0.51 16
21 C -0.14 -0.29 10.86 -38.99 -0.42 -0.72 16
22 C -0.22 -0.46 10.81 -39.98 -0.43 -0.90 16
23 C 0.03 0.05 11.90 -16.79 -0.20 -0.15 16
24 N -0.51 -1.21 4.51 -10.56 -0.05 -1.25 16
25 H 0.42 0.79 6.14 -40.82 -0.25 0.54 16
26 C -0.07 0.11 0.62 -154.51 -0.10 0.02 16
27 C -0.15 0.29 7.97 37.15 0.30 0.59 16
28 C -0.13 -0.05 7.00 37.16 0.26 0.21 16
29 C -0.15 0.23 8.12 37.16 0.30 0.53 16
30 H 0.07 -0.17 8.14 -51.92 -0.42 -0.60 16
31 H 0.06 -0.26 7.56 -51.93 -0.39 -0.66 16
32 H 0.07 -0.06 7.80 -51.93 -0.40 -0.47 16
33 H 0.11 -0.52 7.85 -51.93 -0.41 -0.92 16
34 H 0.34 -0.10 8.23 -40.82 -0.34 -0.44 16
35 H 0.40 -1.83 8.02 -40.82 -0.33 -2.15 16
36 H 0.08 -0.11 6.71 -51.93 -0.35 -0.46 16
37 H 0.08 -0.11 6.17 -51.93 -0.32 -0.43 16
38 H 0.40 -1.21 8.10 -40.82 -0.33 -1.54 16
39 H 0.14 -0.37 8.06 -52.49 -0.42 -0.79 16
40 H 0.15 -0.39 8.06 -52.48 -0.42 -0.81 16
41 H 0.14 0.01 8.06 -52.49 -0.42 -0.42 16
42 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16
43 H 0.17 -0.16 8.06 -52.48 -0.42 -0.58 16
44 H 0.06 -0.13 7.60 -51.93 -0.39 -0.53 16
45 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16
46 H 0.06 -0.12 6.32 -51.93 -0.33 -0.45 16
47 H 0.06 0.13 7.53 -51.93 -0.39 -0.26 16
48 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16
49 H 0.05 0.06 5.78 -51.93 -0.30 -0.24 16
50 H 0.06 -0.11 6.55 -51.93 -0.34 -0.45 16
51 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16
52 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16
LS Contribution 407.15 15.07 6.14 6.14
Total: 0.00 -7.32 407.15 -8.66 -15.98
By element:
Atomic # 1 Polarization: -5.07 SS G_CDS: -8.29 Total: -13.36 kcal
Atomic # 6 Polarization: 0.11 SS G_CDS: -1.83 Total: -1.72 kcal
Atomic # 7 Polarization: 1.63 SS G_CDS: 0.14 Total: 1.76 kcal
Atomic # 8 Polarization: -3.67 SS G_CDS: 0.14 Total: -3.53 kcal
Atomic # 14 Polarization: -0.31 SS G_CDS: -4.95 Total: -5.27 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -7.32 -8.66 -15.98 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001756720646.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.729 kcal
(2) G-P(sol) polarization free energy of solvation -7.319 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.411 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds