Wall clock time and date at job start Wed Apr 1 2020 04:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46871 * 2 1 4 4 N 1.27946 * 120.00252 * 24.99380 * 3 2 1 5 5 Si 1.86805 * 119.99869 * 204.99779 * 3 2 1 6 6 H 1.48498 * 109.46968 * 89.99415 * 5 3 2 7 7 H 1.48494 * 109.47232 * 209.99748 * 5 3 2 8 8 H 1.48505 * 109.46753 * 329.99841 * 5 3 2 9 9 C 1.50698 * 109.46778 * 119.99284 * 2 1 3 10 10 O 1.21288 * 120.00384 * 239.99819 * 9 2 1 11 11 N 1.34777 * 120.00092 * 60.00458 * 9 2 1 12 12 C 1.46491 * 120.00315 * 179.97438 * 11 9 2 13 13 H 1.09004 * 109.47469 * 35.00056 * 12 11 9 14 14 C 1.53001 * 109.47423 * 155.00092 * 12 11 9 15 15 N 1.46504 * 109.46929 * 305.00504 * 14 12 11 16 16 C 1.34777 * 119.99850 * 180.02562 * 15 14 12 17 17 O 1.21778 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.41516 * 119.99652 * 179.97438 * 16 15 14 19 19 C 1.35620 * 119.99828 * 188.37856 * 18 16 15 20 20 C 1.41674 * 120.00196 * 32.27983 * 19 18 16 21 21 C 1.38274 * 126.26008 * 187.25494 * 20 19 18 22 22 C 1.39792 * 107.07893 * 179.97438 * 21 20 19 23 23 C 1.35504 * 107.90588 * 359.74048 * 22 21 20 24 24 N 1.35750 * 108.91073 * 0.42787 * 23 22 21 25 25 H 0.96999 * 125.68731 * 179.82657 * 24 23 22 26 26 C 1.53005 * 109.47474 * 274.99911 * 12 11 9 27 27 C 1.52995 * 109.46962 * 300.00242 * 26 12 11 28 28 C 1.53002 * 109.46596 * 60.00095 * 26 12 11 29 29 C 1.52998 * 109.47171 * 179.97438 * 26 12 11 30 30 H 1.09008 * 109.47032 * 60.00496 * 1 2 3 31 31 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47718 * 300.00766 * 1 2 3 33 33 H 1.08993 * 109.47528 * 239.99698 * 2 1 3 34 34 H 0.97000 * 119.99521 * 180.02562 * 4 3 2 35 35 H 0.97002 * 119.99813 * 0.02562 * 11 9 2 36 36 H 1.08996 * 109.47439 * 185.00210 * 14 12 11 37 37 H 1.09005 * 109.47370 * 64.99870 * 14 12 11 38 38 H 0.97000 * 119.99965 * 359.97438 * 15 14 12 39 39 H 1.08000 * 120.00264 * 8.37469 * 18 16 15 40 40 H 1.08005 * 119.99975 * 212.27906 * 19 18 16 41 41 H 1.07997 * 126.46357 * 359.95951 * 21 20 19 42 42 H 1.07996 * 126.04523 * 179.97438 * 22 21 20 43 43 H 1.08003 * 125.54631 * 180.25984 * 23 22 21 44 44 H 1.08994 * 109.47404 * 59.99743 * 27 26 12 45 45 H 1.09007 * 109.46738 * 179.97438 * 27 26 12 46 46 H 1.08997 * 109.47390 * 299.99381 * 27 26 12 47 47 H 1.08994 * 109.47254 * 60.00369 * 28 26 12 48 48 H 1.09007 * 109.46931 * 179.97438 * 28 26 12 49 49 H 1.08994 * 109.47154 * 299.99880 * 28 26 12 50 50 H 1.09006 * 109.46949 * 60.00497 * 29 26 12 51 51 H 1.09000 * 109.47289 * 180.02562 * 29 26 12 52 52 H 1.08994 * 109.47663 * 300.00234 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 1.2986 2.3588 0.4682 5 14 3.7260 1.8128 -0.6837 6 1 3.6169 2.1136 -2.1337 7 1 4.2856 2.9911 0.0257 8 1 4.6217 0.6448 -0.4864 9 6 2.0322 -0.7103 1.2306 10 8 2.7295 -0.1208 2.0289 11 7 1.7067 -2.0006 1.4440 12 6 2.1953 -2.6912 2.6399 13 1 2.2323 -1.9909 3.4743 14 6 1.2514 -3.8451 2.9840 15 7 -0.1147 -3.3340 3.1217 16 6 -1.1220 -4.1765 3.4252 17 8 -0.8967 -5.3626 3.5846 18 6 -2.4414 -3.6826 3.5588 19 6 -3.4238 -4.4912 4.0283 20 6 -3.1200 -5.4960 4.9797 21 6 -3.9815 -6.4757 5.4379 22 6 -3.2711 -7.2479 6.3616 23 6 -2.0158 -6.7447 6.4474 24 7 -1.9126 -5.6759 5.6168 25 1 -1.1194 -5.1322 5.4902 26 6 3.5978 -3.2418 2.3737 27 6 3.5459 -4.2249 1.2024 28 6 4.5418 -2.0879 2.0296 29 6 4.1084 -3.9626 3.6229 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.6219 3.2733 0.4678 35 1 1.1494 -2.4722 0.8052 36 1 1.5643 -4.3031 3.9223 37 1 1.2822 -4.5895 2.1883 38 1 -0.2941 -2.3892 2.9952 39 1 -2.6661 -2.6618 3.2868 40 1 -4.4378 -4.3691 3.6770 41 1 -5.0095 -6.6175 5.1388 42 1 -3.6537 -8.0977 6.9072 43 1 -1.2267 -7.1294 7.0764 44 1 3.1823 -3.7110 0.3126 45 1 4.5452 -4.6168 1.0125 46 1 2.8734 -5.0469 1.4475 47 1 4.5787 -1.3876 2.8640 48 1 5.5411 -2.4801 1.8404 49 1 4.1782 -1.5741 1.1398 50 1 3.4359 -4.7846 3.8684 51 1 5.1077 -4.3545 3.4335 52 1 4.1454 -3.2620 4.4571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756720646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:40 Heat of formation + Delta-G solvation = 25.746179 kcal Electronic energy + Delta-G solvation = -32206.131775 eV Core-core repulsion = 28094.745694 eV Total energy + Delta-G solvation = -4111.386081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.207 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23516 -41.72132 -40.45667 -39.02682 -36.99436 -35.80858 -34.72868 -34.64921 -32.84696 -31.76311 -30.44911 -28.85230 -28.36050 -27.93860 -26.45516 -25.33410 -23.63234 -22.60750 -21.82848 -21.19929 -20.79905 -20.48861 -19.79323 -19.02631 -18.24276 -17.76948 -17.69390 -17.35935 -16.85783 -16.36999 -16.00936 -15.39411 -15.37784 -15.24422 -15.07437 -14.98197 -14.90943 -14.76185 -14.61778 -14.31361 -14.14913 -13.94695 -13.70640 -13.42770 -13.30017 -13.14950 -13.12750 -13.05157 -12.99382 -12.84646 -12.66276 -12.54777 -12.43827 -12.25784 -12.21047 -11.75411 -11.62474 -11.53906 -11.04071 -10.73542 -10.71113 -10.18196 -10.10486 -9.91299 -9.65421 -8.42633 -0.45890 0.73555 1.03444 1.37128 1.56073 1.59217 1.71786 1.85805 2.05744 2.08634 2.27272 2.48515 2.61190 3.31064 3.38311 3.64142 3.73978 3.81904 3.93743 4.00637 4.03289 4.08513 4.11471 4.12620 4.33110 4.36315 4.46628 4.51656 4.51872 4.55558 4.62094 4.63256 4.67027 4.76938 4.81844 4.82833 4.93453 4.95449 4.99175 5.02476 5.06736 5.09158 5.13737 5.24032 5.26736 5.34949 5.39641 5.43000 5.44578 5.49468 6.07131 6.24882 6.33810 6.44907 6.73363 6.81330 7.12646 7.20731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 C 0.015 3.985 4 N -0.617 5.617 5 Si 0.934 3.066 6 H -0.242 1.242 7 H -0.244 1.244 8 H -0.233 1.233 9 C 0.529 3.471 10 O -0.522 6.522 11 N -0.725 5.725 12 C 0.145 3.855 13 H 0.097 0.903 14 C 0.107 3.893 15 N -0.730 5.730 16 C 0.547 3.453 17 O -0.552 6.552 18 C -0.307 4.307 19 C 0.064 3.936 20 C -0.006 4.006 21 C -0.135 4.135 22 C -0.217 4.217 23 C 0.028 3.972 24 N -0.511 5.511 25 H 0.417 0.583 26 C -0.075 4.075 27 C -0.147 4.147 28 C -0.134 4.134 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.340 0.660 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.403 0.597 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.165 0.835 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.062 0.938 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 0.229 -2.350 2.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 C -0.235 4.235 4 N -0.229 5.229 5 Si 0.750 3.250 6 H -0.165 1.165 7 H -0.167 1.167 8 H -0.155 1.155 9 C 0.314 3.686 10 O -0.397 6.397 11 N -0.378 5.378 12 C 0.040 3.960 13 H 0.115 0.885 14 C -0.017 4.017 15 N -0.381 5.381 16 C 0.341 3.659 17 O -0.434 6.434 18 C -0.329 4.329 19 C 0.044 3.956 20 C -0.116 4.116 21 C -0.161 4.161 22 C -0.241 4.241 23 C -0.111 4.111 24 N -0.107 5.107 25 H 0.259 0.741 26 C -0.077 4.077 27 C -0.204 4.204 28 C -0.192 4.192 29 C -0.204 4.204 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.158 0.842 35 H 0.238 0.762 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.237 0.763 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.183 0.817 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.081 0.919 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.152 0.223 -1.600 1.622 hybrid contribution 0.524 0.818 -0.684 1.188 sum 0.675 1.041 -2.283 2.599 Atomic orbital electron populations 1.21620 0.90976 1.01876 1.04451 1.20595 0.99229 0.93238 0.97622 1.29646 1.03578 0.95505 0.94751 1.68055 1.37960 1.05478 1.11428 0.85688 0.75797 0.82987 0.80569 1.16542 1.16694 1.15518 1.20222 0.79759 0.81417 0.87179 1.90734 1.36690 1.65910 1.46362 1.46029 1.54137 1.11956 1.25653 1.21286 0.92635 0.93517 0.88541 0.88457 1.21813 0.80741 0.96058 1.03113 1.46008 1.07432 1.11826 1.72884 1.17212 0.85332 0.86225 0.77129 1.90887 1.84901 1.15730 1.51875 1.21733 0.93470 1.01558 1.16118 1.20879 0.99741 0.88065 0.86949 1.18234 0.87036 1.03442 1.02920 1.21574 0.99452 0.95454 0.99635 1.20885 0.94154 1.03996 1.05047 1.22167 0.99461 0.90937 0.98517 1.42596 1.11982 1.24527 1.31565 0.74110 1.20897 0.93932 0.96340 0.96489 1.21962 1.02404 0.98559 0.97452 1.21923 0.97914 0.96941 1.02381 1.21945 1.01622 1.00189 0.96617 0.91150 0.92338 0.90748 0.86856 0.84246 0.76235 0.89827 0.90178 0.76263 0.84701 0.83506 0.83964 0.84274 0.81728 0.92491 0.92186 0.92225 0.91659 0.93091 0.92721 0.92216 0.91923 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.35 8.58 37.16 0.32 0.67 16 2 C -0.08 0.16 2.66 -92.92 -0.25 -0.08 16 3 C 0.02 0.00 4.17 -13.90 -0.06 -0.06 16 4 N -0.62 -0.54 12.70 56.23 0.71 0.17 16 5 Si 0.93 -0.31 29.14 -169.99 -4.95 -5.27 16 6 H -0.24 0.11 7.11 56.52 0.40 0.51 16 7 H -0.24 -0.23 7.11 56.52 0.40 0.17 16 8 H -0.23 -0.09 7.11 56.52 0.40 0.31 16 9 C 0.53 -0.31 5.42 -10.99 -0.06 -0.37 16 10 O -0.52 -1.46 12.87 5.55 0.07 -1.39 16 11 N -0.72 2.04 3.53 -53.81 -0.19 1.85 16 12 C 0.15 -0.29 1.69 -67.93 -0.11 -0.41 16 13 H 0.10 -0.04 7.58 -51.93 -0.39 -0.43 16 14 C 0.11 -0.21 4.51 -4.04 -0.02 -0.23 16 15 N -0.73 1.33 5.38 -63.25 -0.34 0.99 16 16 C 0.55 0.41 6.32 -15.01 -0.09 0.31 16 17 O -0.55 -2.21 12.73 5.12 0.07 -2.14 16 18 C -0.31 0.14 9.72 -39.27 -0.38 -0.24 16 19 C 0.06 0.01 9.76 -39.21 -0.38 -0.37 16 20 C -0.01 -0.01 5.95 -83.91 -0.50 -0.51 16 21 C -0.14 -0.29 10.86 -38.99 -0.42 -0.72 16 22 C -0.22 -0.46 10.81 -39.98 -0.43 -0.90 16 23 C 0.03 0.05 11.90 -16.79 -0.20 -0.15 16 24 N -0.51 -1.21 4.51 -10.56 -0.05 -1.25 16 25 H 0.42 0.79 6.14 -40.82 -0.25 0.54 16 26 C -0.07 0.11 0.62 -154.51 -0.10 0.02 16 27 C -0.15 0.29 7.97 37.15 0.30 0.59 16 28 C -0.13 -0.05 7.00 37.16 0.26 0.21 16 29 C -0.15 0.23 8.12 37.16 0.30 0.53 16 30 H 0.07 -0.17 8.14 -51.92 -0.42 -0.60 16 31 H 0.06 -0.26 7.56 -51.93 -0.39 -0.66 16 32 H 0.07 -0.06 7.80 -51.93 -0.40 -0.47 16 33 H 0.11 -0.52 7.85 -51.93 -0.41 -0.92 16 34 H 0.34 -0.10 8.23 -40.82 -0.34 -0.44 16 35 H 0.40 -1.83 8.02 -40.82 -0.33 -2.15 16 36 H 0.08 -0.11 6.71 -51.93 -0.35 -0.46 16 37 H 0.08 -0.11 6.17 -51.93 -0.32 -0.43 16 38 H 0.40 -1.21 8.10 -40.82 -0.33 -1.54 16 39 H 0.14 -0.37 8.06 -52.49 -0.42 -0.79 16 40 H 0.15 -0.39 8.06 -52.48 -0.42 -0.81 16 41 H 0.14 0.01 8.06 -52.49 -0.42 -0.42 16 42 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16 43 H 0.17 -0.16 8.06 -52.48 -0.42 -0.58 16 44 H 0.06 -0.13 7.60 -51.93 -0.39 -0.53 16 45 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 46 H 0.06 -0.12 6.32 -51.93 -0.33 -0.45 16 47 H 0.06 0.13 7.53 -51.93 -0.39 -0.26 16 48 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 49 H 0.05 0.06 5.78 -51.93 -0.30 -0.24 16 50 H 0.06 -0.11 6.55 -51.93 -0.34 -0.45 16 51 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 52 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 LS Contribution 407.15 15.07 6.14 6.14 Total: 0.00 -7.32 407.15 -8.66 -15.98 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -8.29 Total: -13.36 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.83 Total: -1.72 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: 0.14 Total: 1.76 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: 0.14 Total: -3.53 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -4.95 Total: -5.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -7.32 -8.66 -15.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756720646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.729 kcal (2) G-P(sol) polarization free energy of solvation -7.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds