Wall clock time and date at job start Wed Apr 1 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46871 * 2 1 4 4 N 1.27946 * 120.00252 * 24.99380 * 3 2 1 5 5 Si 1.86805 * 119.99869 * 204.99779 * 3 2 1 6 6 H 1.48498 * 109.46968 * 89.99415 * 5 3 2 7 7 H 1.48494 * 109.47232 * 209.99748 * 5 3 2 8 8 H 1.48505 * 109.46753 * 329.99841 * 5 3 2 9 9 C 1.50698 * 109.46778 * 119.99284 * 2 1 3 10 10 O 1.21288 * 120.00384 * 239.99819 * 9 2 1 11 11 N 1.34777 * 120.00092 * 60.00458 * 9 2 1 12 12 C 1.46491 * 120.00315 * 179.97438 * 11 9 2 13 13 H 1.09004 * 109.47469 * 35.00056 * 12 11 9 14 14 C 1.53001 * 109.47423 * 155.00092 * 12 11 9 15 15 N 1.46504 * 109.46929 * 305.00504 * 14 12 11 16 16 C 1.34777 * 119.99850 * 180.02562 * 15 14 12 17 17 O 1.21778 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.41516 * 119.99652 * 179.97438 * 16 15 14 19 19 C 1.35620 * 119.99828 * 188.37856 * 18 16 15 20 20 C 1.41674 * 120.00196 * 32.27983 * 19 18 16 21 21 C 1.38274 * 126.26008 * 187.25494 * 20 19 18 22 22 C 1.39792 * 107.07893 * 179.97438 * 21 20 19 23 23 C 1.35504 * 107.90588 * 359.74048 * 22 21 20 24 24 N 1.35750 * 108.91073 * 0.42787 * 23 22 21 25 25 H 0.96999 * 125.68731 * 179.82657 * 24 23 22 26 26 C 1.53005 * 109.47474 * 274.99911 * 12 11 9 27 27 C 1.52995 * 109.46962 * 300.00242 * 26 12 11 28 28 C 1.53002 * 109.46596 * 60.00095 * 26 12 11 29 29 C 1.52998 * 109.47171 * 179.97438 * 26 12 11 30 30 H 1.09008 * 109.47032 * 60.00496 * 1 2 3 31 31 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47718 * 300.00766 * 1 2 3 33 33 H 1.08993 * 109.47528 * 239.99698 * 2 1 3 34 34 H 0.97000 * 119.99521 * 180.02562 * 4 3 2 35 35 H 0.97002 * 119.99813 * 0.02562 * 11 9 2 36 36 H 1.08996 * 109.47439 * 185.00210 * 14 12 11 37 37 H 1.09005 * 109.47370 * 64.99870 * 14 12 11 38 38 H 0.97000 * 119.99965 * 359.97438 * 15 14 12 39 39 H 1.08000 * 120.00264 * 8.37469 * 18 16 15 40 40 H 1.08005 * 119.99975 * 212.27906 * 19 18 16 41 41 H 1.07997 * 126.46357 * 359.95951 * 21 20 19 42 42 H 1.07996 * 126.04523 * 179.97438 * 22 21 20 43 43 H 1.08003 * 125.54631 * 180.25984 * 23 22 21 44 44 H 1.08994 * 109.47404 * 59.99743 * 27 26 12 45 45 H 1.09007 * 109.46738 * 179.97438 * 27 26 12 46 46 H 1.08997 * 109.47390 * 299.99381 * 27 26 12 47 47 H 1.08994 * 109.47254 * 60.00369 * 28 26 12 48 48 H 1.09007 * 109.46931 * 179.97438 * 28 26 12 49 49 H 1.08994 * 109.47154 * 299.99880 * 28 26 12 50 50 H 1.09006 * 109.46949 * 60.00497 * 29 26 12 51 51 H 1.09000 * 109.47289 * 180.02562 * 29 26 12 52 52 H 1.08994 * 109.47663 * 300.00234 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 1.2986 2.3588 0.4682 5 14 3.7260 1.8128 -0.6837 6 1 3.6169 2.1136 -2.1337 7 1 4.2856 2.9911 0.0257 8 1 4.6217 0.6448 -0.4864 9 6 2.0322 -0.7103 1.2306 10 8 2.7295 -0.1208 2.0289 11 7 1.7067 -2.0006 1.4440 12 6 2.1953 -2.6912 2.6399 13 1 2.2323 -1.9909 3.4743 14 6 1.2514 -3.8451 2.9840 15 7 -0.1147 -3.3340 3.1217 16 6 -1.1220 -4.1765 3.4252 17 8 -0.8967 -5.3626 3.5846 18 6 -2.4414 -3.6826 3.5588 19 6 -3.4238 -4.4912 4.0283 20 6 -3.1200 -5.4960 4.9797 21 6 -3.9815 -6.4757 5.4379 22 6 -3.2711 -7.2479 6.3616 23 6 -2.0158 -6.7447 6.4474 24 7 -1.9126 -5.6759 5.6168 25 1 -1.1194 -5.1322 5.4902 26 6 3.5978 -3.2418 2.3737 27 6 3.5459 -4.2249 1.2024 28 6 4.5418 -2.0879 2.0296 29 6 4.1084 -3.9626 3.6229 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.6219 3.2733 0.4678 35 1 1.1494 -2.4722 0.8052 36 1 1.5643 -4.3031 3.9223 37 1 1.2822 -4.5895 2.1883 38 1 -0.2941 -2.3892 2.9952 39 1 -2.6661 -2.6618 3.2868 40 1 -4.4378 -4.3691 3.6770 41 1 -5.0095 -6.6175 5.1388 42 1 -3.6537 -8.0977 6.9072 43 1 -1.2267 -7.1294 7.0764 44 1 3.1823 -3.7110 0.3126 45 1 4.5452 -4.6168 1.0125 46 1 2.8734 -5.0469 1.4475 47 1 4.5787 -1.3876 2.8640 48 1 5.5411 -2.4801 1.8404 49 1 4.1782 -1.5741 1.1398 50 1 3.4359 -4.7846 3.8684 51 1 5.1077 -4.3545 3.4335 52 1 4.1454 -3.2620 4.4571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756720646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:39 Heat of formation + Delta-G solvation = 29.027892 kcal Electronic energy + Delta-G solvation = -32205.989470 eV Core-core repulsion = 28094.745694 eV Total energy + Delta-G solvation = -4111.243775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.207 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.27523 -41.68165 -40.48971 -38.98597 -36.97169 -35.78091 -34.69585 -34.64660 -32.74521 -31.84638 -30.42759 -28.86641 -28.24632 -27.89949 -26.30918 -25.30202 -23.59299 -22.56658 -21.85900 -21.26770 -20.82227 -20.42054 -19.74502 -19.00078 -18.17961 -17.73362 -17.68093 -17.30612 -16.82290 -16.33469 -15.99296 -15.38643 -15.32472 -15.21780 -15.01802 -15.00563 -14.88892 -14.74786 -14.59349 -14.27090 -14.16163 -13.89733 -13.68690 -13.33091 -13.21082 -13.15258 -13.04640 -12.99484 -12.94132 -12.86806 -12.64736 -12.48572 -12.30040 -12.21584 -12.16117 -11.70714 -11.62346 -11.48765 -11.11531 -10.73262 -10.71148 -10.15596 -10.04384 -9.89231 -9.74684 -8.46934 -0.44593 0.75561 1.05547 1.35986 1.60446 1.62656 1.64655 1.86313 2.00939 2.14808 2.33584 2.44923 2.58299 3.41018 3.47955 3.72747 3.85290 3.89489 4.09320 4.10888 4.13902 4.15445 4.21036 4.30563 4.33028 4.44068 4.46621 4.51299 4.61993 4.66830 4.71969 4.73610 4.74827 4.83874 4.90121 5.00747 5.02217 5.03276 5.04490 5.08300 5.12146 5.13997 5.21461 5.35984 5.37143 5.38989 5.41790 5.44311 5.46619 5.51486 6.01438 6.17644 6.48955 6.52171 6.66414 6.85070 7.21594 7.23247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C 0.014 3.986 4 N -0.636 5.636 5 Si 0.958 3.042 6 H -0.235 1.235 7 H -0.269 1.269 8 H -0.243 1.243 9 C 0.530 3.470 10 O -0.559 6.559 11 N -0.711 5.711 12 C 0.156 3.844 13 H 0.082 0.918 14 C 0.114 3.886 15 N -0.716 5.716 16 C 0.543 3.457 17 O -0.586 6.586 18 C -0.301 4.301 19 C 0.052 3.948 20 C -0.020 4.020 21 C -0.156 4.156 22 C -0.234 4.234 23 C 0.012 3.988 24 N -0.516 5.516 25 H 0.416 0.584 26 C -0.071 4.071 27 C -0.144 4.144 28 C -0.130 4.130 29 C -0.145 4.145 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.145 0.855 34 H 0.342 0.658 35 H 0.415 0.585 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.411 0.589 39 H 0.161 0.839 40 H 0.174 0.826 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.185 0.815 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.045 0.955 48 H 0.050 0.950 49 H 0.049 0.951 50 H 0.065 0.935 51 H 0.060 0.940 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -0.091 -3.563 3.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.110 4.110 3 C -0.236 4.236 4 N -0.249 5.249 5 Si 0.776 3.224 6 H -0.158 1.158 7 H -0.193 1.193 8 H -0.166 1.166 9 C 0.316 3.684 10 O -0.437 6.437 11 N -0.364 5.364 12 C 0.050 3.950 13 H 0.100 0.900 14 C -0.010 4.010 15 N -0.367 5.367 16 C 0.337 3.663 17 O -0.471 6.471 18 C -0.323 4.323 19 C 0.031 3.969 20 C -0.131 4.131 21 C -0.181 4.181 22 C -0.258 4.258 23 C -0.126 4.126 24 N -0.112 5.112 25 H 0.258 0.742 26 C -0.073 4.073 27 C -0.201 4.201 28 C -0.187 4.187 29 C -0.203 4.203 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.252 0.748 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.247 0.753 39 H 0.179 0.821 40 H 0.191 0.809 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.202 0.798 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.079 0.921 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.628 -0.096 -2.841 2.912 hybrid contribution 0.832 0.963 -0.304 1.309 sum 0.204 0.867 -3.146 3.269 Atomic orbital electron populations 1.21589 0.90118 1.03144 1.03557 1.20757 0.99916 0.92217 0.98136 1.29859 1.03433 0.96305 0.93959 1.68098 1.38594 1.05931 1.12266 0.85336 0.75303 0.81345 0.80395 1.15821 1.19278 1.16574 1.20469 0.79133 0.81717 0.87113 1.90732 1.38507 1.66819 1.47684 1.45888 1.53668 1.11359 1.25486 1.21086 0.92464 0.93040 0.88364 0.89993 1.21733 0.80519 0.95828 1.02919 1.45893 1.07055 1.11968 1.71781 1.17465 0.86107 0.85882 0.76816 1.90876 1.85436 1.17283 1.53509 1.21977 0.92618 1.02462 1.15193 1.21240 1.01325 0.87515 0.86782 1.18691 0.87009 1.03986 1.03442 1.21890 1.00377 0.95780 1.00072 1.21169 0.94572 1.04573 1.05489 1.22576 1.00116 0.91041 0.98906 1.42678 1.12079 1.24694 1.31737 0.74189 1.20845 0.93665 0.95860 0.96881 1.21937 1.02411 0.98448 0.97293 1.21860 0.98404 0.97089 1.01352 1.21934 1.01732 1.00208 0.96410 0.91025 0.89963 0.92647 0.83727 0.84070 0.74785 0.90299 0.90079 0.75302 0.82133 0.80895 0.82501 0.83310 0.79830 0.91721 0.92517 0.91790 0.93584 0.93140 0.93176 0.91605 0.92053 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.85 8.58 71.98 0.62 1.47 16 2 C -0.09 0.43 2.66 -12.29 -0.03 0.40 16 3 C 0.01 0.00 4.17 88.68 0.37 0.36 16 4 N -0.64 -1.42 12.70 24.11 0.31 -1.11 16 5 Si 0.96 -0.30 29.14 68.60 2.00 1.70 16 6 H -0.24 0.35 7.11 99.48 0.71 1.06 16 7 H -0.27 -0.94 7.11 99.48 0.71 -0.23 16 8 H -0.24 -0.29 7.11 99.48 0.71 0.41 16 9 C 0.53 -0.82 5.42 87.66 0.48 -0.34 16 10 O -0.56 -3.56 12.87 -3.06 -0.04 -3.60 16 11 N -0.71 4.64 3.53 -442.53 -1.56 3.08 16 12 C 0.16 -0.65 1.69 44.99 0.08 -0.58 16 13 H 0.08 -0.01 7.58 -2.39 -0.02 -0.03 16 14 C 0.11 -0.50 4.51 86.38 0.39 -0.11 16 15 N -0.72 3.22 5.38 -472.20 -2.54 0.68 16 16 C 0.54 0.47 6.32 85.05 0.54 1.01 16 17 O -0.59 -4.74 12.73 -4.60 -0.06 -4.80 16 18 C -0.30 0.64 9.72 22.47 0.22 0.85 16 19 C 0.05 -0.02 9.76 22.51 0.22 0.20 16 20 C -0.02 -0.10 5.95 39.08 0.23 0.13 16 21 C -0.16 -0.75 10.86 22.65 0.25 -0.51 16 22 C -0.23 -1.18 10.81 22.01 0.24 -0.95 16 23 C 0.01 0.05 11.90 83.45 0.99 1.04 16 24 N -0.52 -2.79 4.51 -187.34 -0.84 -3.63 16 25 H 0.42 1.91 6.14 -92.71 -0.57 1.34 16 26 C -0.07 0.21 0.62 -52.18 -0.03 0.17 16 27 C -0.14 0.68 7.97 71.98 0.57 1.25 16 28 C -0.13 -0.19 7.00 71.98 0.50 0.32 16 29 C -0.15 0.39 8.12 71.98 0.58 0.97 16 30 H 0.07 -0.46 8.14 -2.38 -0.02 -0.48 16 31 H 0.08 -0.95 7.56 -2.39 -0.02 -0.97 16 32 H 0.05 -0.12 7.80 -2.39 -0.02 -0.14 16 33 H 0.15 -1.64 7.85 -2.39 -0.02 -1.66 16 34 H 0.34 0.13 8.23 -92.71 -0.76 -0.63 16 35 H 0.41 -4.58 8.02 -92.71 -0.74 -5.32 16 36 H 0.08 -0.21 6.71 -2.39 -0.02 -0.22 16 37 H 0.08 -0.30 6.17 -2.38 -0.01 -0.31 16 38 H 0.41 -3.01 8.10 -92.71 -0.75 -3.76 16 39 H 0.16 -1.25 8.06 -2.91 -0.02 -1.27 16 40 H 0.17 -1.17 8.06 -2.91 -0.02 -1.19 16 41 H 0.16 0.05 8.06 -2.91 -0.02 0.02 16 42 H 0.15 0.26 8.06 -2.91 -0.02 0.23 16 43 H 0.18 -0.24 8.06 -2.91 -0.02 -0.26 16 44 H 0.06 -0.39 7.60 -2.39 -0.02 -0.41 16 45 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 46 H 0.06 -0.33 6.32 -2.39 -0.02 -0.34 16 47 H 0.05 0.26 7.53 -2.39 -0.02 0.24 16 48 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 49 H 0.05 0.12 5.78 -2.39 -0.01 0.11 16 50 H 0.07 -0.25 6.55 -2.38 -0.02 -0.26 16 51 H 0.06 -0.14 8.14 -2.39 -0.02 -0.15 16 52 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -18.85 407.15 2.37 -16.49 By element: Atomic # 1 Polarization: -13.40 SS G_CDS: -1.11 Total: -14.51 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.21 Total: 5.70 kcal Atomic # 7 Polarization: 3.65 SS G_CDS: -4.64 Total: -0.99 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.10 Total: -8.39 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.00 Total: 1.70 kcal Total: -18.85 2.37 -16.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756720646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.513 kcal (2) G-P(sol) polarization free energy of solvation -18.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds