Wall clock time and date at job start Wed Apr 1 2020 04:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47462 * 2 1 4 4 O 1.42900 * 109.46785 * 120.00185 * 2 1 3 5 5 C 1.35669 * 116.99724 * 154.09290 * 4 2 1 6 6 C 1.39286 * 119.61890 * 174.34600 * 5 4 2 7 7 C 1.38325 * 119.31208 * 179.97438 * 6 5 4 8 8 C 1.38791 * 118.55744 * 359.97438 * 7 6 5 9 9 C 1.39127 * 119.18430 * 0.02562 * 8 7 6 10 10 C 1.48149 * 119.68925 * 179.97438 * 9 8 7 11 11 O 1.21518 * 119.99679 * 21.42260 * 10 9 8 12 12 N 1.34775 * 120.00104 * 201.42284 * 10 9 8 13 13 C 1.46927 * 120.63169 * 6.80795 * 12 10 9 14 14 C 1.53155 * 108.76990 * 233.63054 * 13 12 10 15 15 C 1.53041 * 109.32829 * 305.35555 * 14 13 12 16 16 H 1.08999 * 109.46172 * 181.38195 * 15 14 13 17 17 N 1.46497 * 109.45911 * 301.35790 * 15 14 13 18 18 C 1.36937 * 119.99980 * 275.02630 * 17 15 14 19 19 H 1.07995 * 120.00025 * 359.72255 * 18 17 15 20 20 C 1.38812 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99957 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00091 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47104 * 59.99546 * 22 20 18 24 24 H 1.48496 * 109.47462 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47095 * 299.99967 * 22 20 18 26 26 C 1.53045 * 109.52724 * 61.37260 * 15 14 13 27 27 C 1.46930 * 120.62846 * 186.82961 * 12 10 9 28 28 H 1.09004 * 109.58523 * 246.15442 * 27 12 10 29 29 C 1.53000 * 109.70647 * 6.51493 * 27 12 10 30 30 N 1.31899 * 119.61952 * 354.59043 * 5 4 2 31 31 H 1.09001 * 109.47134 * 300.00172 * 1 2 3 32 32 H 1.09008 * 109.46674 * 59.99931 * 1 2 3 33 33 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47134 * 239.99828 * 2 1 3 35 35 H 1.09001 * 109.47087 * 59.99799 * 3 2 1 36 36 H 1.09004 * 109.47506 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47416 * 300.00089 * 3 2 1 38 38 H 1.08000 * 120.34365 * 0.02562 * 6 5 4 39 39 H 1.07994 * 120.72694 * 180.02562 * 7 6 5 40 40 H 1.08001 * 120.40464 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.58120 * 353.42262 * 13 12 10 42 42 H 1.09002 * 109.58463 * 113.70058 * 13 12 10 43 43 H 1.09000 * 109.48362 * 185.40545 * 14 13 12 44 44 H 1.09002 * 109.50530 * 65.31504 * 14 13 12 45 45 H 0.96998 * 119.99937 * 95.02903 * 17 15 14 46 46 H 0.97004 * 120.00061 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.49747 * 58.59048 * 26 15 14 48 48 H 1.08999 * 109.49688 * 178.66061 * 26 15 14 49 49 H 1.08994 * 109.47106 * 171.83557 * 29 27 12 50 50 H 1.09006 * 109.46759 * 291.83575 * 29 27 12 51 51 H 1.08998 * 109.46953 * 51.83170 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 3.2367 -1.2402 1.0917 6 6 3.8041 -1.8073 2.2304 7 6 5.0587 -2.3836 2.1465 8 6 5.7116 -2.3766 0.9217 9 6 5.0875 -1.7931 -0.1763 10 6 5.7745 -1.7789 -1.4889 11 8 6.6599 -2.5784 -1.7199 12 7 5.4173 -0.8792 -2.4267 13 6 4.4559 0.1869 -2.1137 14 6 3.3237 0.1476 -3.1444 15 6 3.9175 0.2306 -4.5524 16 1 3.1121 0.2276 -5.2869 17 7 4.6926 1.4668 -4.6831 18 6 4.0649 2.6362 -5.0203 19 1 2.9991 2.6462 -5.1943 20 6 4.7995 3.8074 -5.1447 21 7 6.0993 3.7941 -4.9380 22 14 3.9431 5.4027 -5.6040 23 1 2.9197 5.7282 -4.5783 24 1 4.9421 6.4993 -5.6712 25 1 3.2864 5.2489 -6.9270 26 6 4.8320 -0.9726 -4.7938 27 6 5.9816 -0.9462 -3.7816 28 1 6.6063 -0.0711 -3.9610 29 6 6.8230 -2.2157 -3.9279 30 7 3.8839 -1.2434 -0.0576 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 3.2697 -1.7978 3.1688 39 1 5.5200 -2.8302 3.0149 40 1 6.6923 -2.8179 0.8225 41 1 4.0473 0.0288 -1.1156 42 1 4.9568 1.1541 -2.1545 43 1 2.6544 0.9923 -2.9814 44 1 2.7674 -0.7837 -3.0385 45 1 5.6505 1.4570 -4.5309 46 1 6.6126 4.6126 -5.0246 47 1 4.2614 -1.8933 -4.6723 48 1 5.2358 -0.9255 -5.8051 49 1 7.1195 -2.3370 -4.9697 50 1 7.7131 -2.1356 -3.3038 51 1 6.2358 -3.0788 -3.6143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044803021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:51 Heat of formation + Delta-G solvation = 3.850083 kcal Electronic energy + Delta-G solvation = -33031.279436 eV Core-core repulsion = 28932.599608 eV Total energy + Delta-G solvation = -4098.679828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24928 -39.88150 -38.35981 -37.25460 -34.26356 -33.66233 -33.06080 -31.86683 -31.82316 -30.35179 -29.00563 -27.39688 -26.91087 -25.10075 -23.94360 -23.72885 -23.33153 -21.85040 -21.26862 -20.38412 -18.70885 -18.09190 -17.21193 -17.01940 -16.32906 -15.99572 -15.98640 -15.67850 -15.10051 -14.69380 -14.33131 -14.22365 -14.10904 -13.79113 -13.73793 -13.47234 -13.35268 -13.10606 -12.85412 -12.56175 -12.44380 -12.32771 -12.25051 -12.00863 -11.95987 -11.82158 -11.41813 -11.13885 -11.01137 -10.91432 -10.83066 -10.73319 -10.66371 -10.48424 -10.27081 -10.13601 -9.94680 -9.61732 -9.45115 -8.96552 -8.73068 -8.61682 -8.07648 -6.95744 -5.77335 -3.05745 0.57255 1.07520 2.74301 2.90442 3.17939 3.41706 3.46785 3.47822 3.68154 4.02959 4.58057 4.59773 4.73545 4.77966 4.85574 4.89654 5.00361 5.16036 5.24796 5.33930 5.38609 5.46696 5.51929 5.63570 5.65854 5.66205 5.71873 5.74390 5.80697 5.87407 5.88062 5.93693 5.99376 6.01099 6.07374 6.17528 6.21983 6.23716 6.33389 6.48259 6.53964 6.61037 6.63328 6.78037 6.84480 6.92490 7.07408 7.20338 7.51666 7.68569 7.78729 8.37236 8.41197 9.52367 10.10186 10.45168 11.45190 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.004306 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.848649 B = 6501.264378 C = 8311.465474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.174 4.174 4 O -0.301 6.301 5 C 0.319 3.681 6 C -0.175 4.175 7 C -0.047 4.047 8 C -0.154 4.154 9 C 0.127 3.873 10 C 0.563 3.437 11 O -0.535 6.535 12 N -0.572 5.572 13 C 0.075 3.925 14 C -0.139 4.139 15 C 0.171 3.829 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.132 4.132 27 C 0.142 3.858 28 H 0.082 0.918 29 C -0.136 4.136 30 N -0.502 5.502 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.132 0.868 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.044 0.956 50 H 0.072 0.928 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -12.582 13.914 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C -0.231 4.231 4 O -0.209 6.209 5 C 0.139 3.861 6 C -0.195 4.195 7 C -0.072 4.072 8 C -0.176 4.176 9 C -0.009 4.009 10 C 0.349 3.651 11 O -0.414 6.414 12 N -0.303 5.303 13 C -0.047 4.047 14 C -0.180 4.180 15 C 0.061 3.939 16 H 0.067 0.933 17 N -0.363 5.363 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.170 4.170 27 C 0.040 3.960 28 H 0.099 0.901 29 C -0.193 4.193 30 N -0.229 5.229 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.148 0.852 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.063 0.937 50 H 0.091 0.909 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.566 -12.428 13.165 19.258 hybrid contribution 0.128 0.907 0.259 0.952 sum -6.438 -11.522 13.424 18.825 Atomic orbital electron populations 1.21878 0.92649 1.02815 1.03178 1.22523 0.94707 0.93016 0.87717 1.22328 1.02371 0.95308 1.03123 1.86290 1.27599 1.66847 1.40151 1.19959 0.85816 0.90687 0.89651 1.21261 0.96885 1.03057 0.98340 1.21417 0.93009 0.94996 0.97779 1.21931 1.02358 1.01153 0.92120 1.21086 0.90005 0.94720 0.95113 1.17916 0.82658 0.81600 0.82901 1.90813 1.30752 1.41214 1.78576 1.48055 1.43086 1.28578 1.10536 1.22863 0.89936 0.89365 1.02487 1.22390 0.97407 1.00126 0.98066 1.20236 0.93371 0.86483 0.93815 0.93332 1.42483 1.07361 1.03224 1.83273 1.19172 0.92413 0.86370 1.38851 0.91338 1.24700 0.95539 0.97770 1.02767 1.69644 1.05024 1.27259 1.56187 0.86326 0.78204 0.83697 0.78282 1.21383 1.21798 1.21364 1.22226 0.97203 0.98855 0.98765 1.21318 0.94750 0.99579 0.80353 0.90057 1.22176 1.00789 0.96440 0.99897 1.67315 1.10316 1.20249 1.24999 0.91743 0.90124 0.91972 0.88761 0.92097 0.91804 0.90196 0.83835 0.83520 0.83395 0.85211 0.91124 0.91266 0.93559 0.78198 0.93508 0.92179 0.90738 0.93725 0.90878 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.56 37.16 0.36 -1.01 16 2 C 0.08 0.88 2.89 -26.74 -0.08 0.80 16 3 C -0.17 -2.09 9.16 37.15 0.34 -1.75 16 4 O -0.30 -3.67 9.78 -18.71 -0.18 -3.85 16 5 C 0.32 3.98 7.40 -17.13 -0.13 3.86 16 6 C -0.17 -1.72 10.05 -39.16 -0.39 -2.11 16 7 C -0.05 -0.42 10.16 -39.35 -0.40 -0.82 16 8 C -0.15 -1.80 9.62 -39.05 -0.38 -2.17 16 9 C 0.13 1.83 6.43 -83.02 -0.53 1.30 16 10 C 0.56 9.43 7.38 -12.19 -0.09 9.34 16 11 O -0.54 -9.54 12.14 5.35 0.06 -9.47 16 12 N -0.57 -9.86 2.97 -166.23 -0.49 -10.35 16 13 C 0.08 1.30 5.80 -3.73 -0.02 1.28 16 14 C -0.14 -2.38 5.16 -26.63 -0.14 -2.52 16 15 C 0.17 3.29 3.10 -67.89 -0.21 3.08 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -17.10 4.31 -53.39 -0.23 -17.33 16 18 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 22 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 C -0.13 -2.24 5.07 -26.61 -0.13 -2.38 16 27 C 0.14 2.49 3.19 -67.60 -0.22 2.28 16 28 H 0.08 1.61 6.64 -51.93 -0.34 1.26 16 29 C -0.14 -2.19 7.62 37.16 0.28 -1.91 16 30 N -0.50 -7.02 4.94 -9.87 -0.05 -7.06 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.22 5.90 -51.93 -0.31 0.91 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.87 6.85 -51.93 -0.36 0.52 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.15 1.60 7.78 -52.49 -0.41 1.19 16 41 H 0.13 2.07 1.63 -79.51 -0.13 1.94 16 42 H 0.07 1.46 7.74 -51.93 -0.40 1.05 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.73 7.97 -51.93 -0.41 0.32 16 45 H 0.38 9.78 6.06 -40.82 -0.25 9.54 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 1.25 6.70 -51.93 -0.35 0.90 16 51 H 0.06 1.02 6.81 -51.93 -0.35 0.67 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -30.21 393.78 -9.16 -39.38 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -7.93 Total: 12.22 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.98 Total: 0.43 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.05 Total: -61.49 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.12 Total: -13.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.21 -9.16 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044803021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.226 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds