Wall clock time and date at job start Wed Apr 1 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47111 * 179.97438 * 9 8 6 11 11 O 1.42900 * 109.46716 * 180.02562 * 10 9 8 12 12 C 1.35919 * 116.99939 * 180.02562 * 11 10 9 13 13 C 1.39132 * 120.47535 * 179.72222 * 12 11 10 14 14 C 1.38538 * 118.37272 * 179.71368 * 13 12 11 15 15 C 1.38253 * 119.21966 * 0.57852 * 14 13 12 16 16 N 1.31840 * 120.88994 * 359.68647 * 15 14 13 17 17 C 1.31840 * 121.77953 * 0.02562 * 16 15 14 18 18 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 19 19 C 1.53193 * 108.77550 * 306.39057 * 18 5 4 20 20 C 1.53040 * 109.31153 * 54.63854 * 19 18 5 21 21 H 1.08997 * 109.46043 * 178.61049 * 20 19 18 22 22 N 1.46505 * 109.46056 * 58.64998 * 20 19 18 23 23 C 1.36946 * 119.99484 * 84.93338 * 22 20 19 24 24 H 1.07997 * 120.00087 * 0.02562 * 23 22 20 25 25 C 1.38805 * 119.99308 * 179.97438 * 23 22 20 26 26 N 1.31623 * 119.99372 * 179.97438 * 25 23 22 27 27 Si 1.86791 * 120.00770 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.47241 * 89.99529 * 27 25 23 29 29 H 1.48498 * 109.47806 * 210.00081 * 27 25 23 30 30 H 1.48507 * 109.47156 * 329.99832 * 27 25 23 31 31 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 33 33 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 34 34 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 35 35 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 36 36 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 37 37 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 38 38 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 39 39 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 40 40 H 1.09001 * 109.47181 * 299.99870 * 10 9 8 41 41 H 1.08999 * 109.47177 * 60.00520 * 10 9 8 42 42 H 1.07997 * 120.81189 * 359.97438 * 13 12 11 43 43 H 1.08000 * 120.38632 * 180.26212 * 14 13 12 44 44 H 1.08005 * 119.55231 * 179.70003 * 15 14 13 45 45 H 1.08003 * 119.66351 * 179.97438 * 17 16 15 46 46 H 1.09004 * 109.58885 * 66.17987 * 18 5 4 47 47 H 1.09000 * 109.58663 * 186.46129 * 18 5 4 48 48 H 1.09005 * 109.49580 * 174.58602 * 19 18 5 49 49 H 1.08994 * 109.49562 * 294.64929 * 19 18 5 50 50 H 0.96999 * 120.00270 * 264.93201 * 22 20 19 51 51 H 0.97003 * 119.99726 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9406 -0.0443 -3.2521 11 8 8.5363 0.4903 -4.4359 12 6 9.8932 0.4630 -4.5103 13 6 10.5485 0.9593 -5.6328 14 6 11.9329 0.9154 -5.6600 15 6 12.6122 0.3732 -4.5849 16 7 11.9605 -0.0938 -3.5383 17 6 10.6441 -0.0655 -3.4706 18 6 4.1059 -1.4256 0.0300 19 6 3.5715 -0.6942 1.2655 20 6 2.0414 -0.7230 1.2482 21 1 1.6588 -0.2247 2.1389 22 7 1.5796 -2.1132 1.2305 23 6 1.4500 -2.8065 2.4044 24 1 1.6879 -2.3284 3.3430 25 6 1.0119 -4.1235 2.3877 26 7 0.8879 -4.7901 3.5158 27 14 0.5998 -4.9504 0.7642 28 1 1.8152 -5.6087 0.2214 29 1 -0.4592 -5.9685 0.9819 30 1 0.1156 -3.9314 -0.2015 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6057 -1.7214 -1.2982 35 1 1.7633 -0.1576 -2.1389 36 1 6.1324 0.0580 -1.2148 37 1 6.0583 -1.5486 -1.9776 38 1 6.0660 -0.4863 -4.2178 39 1 6.1401 1.1206 -3.4557 40 1 8.2924 0.5143 -2.3847 41 1 8.2189 -1.0928 -3.1466 42 1 9.9917 1.3726 -6.4608 43 1 12.4749 1.2956 -6.5133 44 1 13.6913 0.3318 -4.6025 45 1 10.1452 -0.4579 -2.5968 46 1 3.8386 -2.4808 0.0860 47 1 5.1903 -1.3252 -0.0159 48 1 3.9345 -1.1888 2.1664 49 1 3.9166 0.3396 1.2538 50 1 1.3656 -2.5425 0.3875 51 1 0.5813 -5.7103 3.5042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271459607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:51 Heat of formation + Delta-G solvation = -30.314317 kcal Electronic energy + Delta-G solvation = -30169.363307 eV Core-core repulsion = 26069.202000 eV Total energy + Delta-G solvation = -4100.161307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99798 -40.26368 -38.66180 -37.95713 -34.48397 -34.26761 -32.94441 -32.63177 -31.56390 -30.65171 -29.80998 -28.21627 -26.21077 -25.14315 -24.14179 -23.38420 -23.18686 -21.94415 -21.70435 -19.69122 -18.70641 -18.19920 -17.92871 -17.33422 -17.01946 -16.85272 -16.66565 -15.76513 -15.63185 -14.88842 -14.84233 -14.59160 -14.36014 -14.21571 -13.81392 -13.75331 -13.59375 -13.48114 -13.24743 -12.92538 -12.70250 -12.61950 -12.47193 -12.37246 -11.94283 -11.75832 -11.63562 -11.58009 -11.44263 -11.06245 -11.05768 -10.99314 -10.66451 -10.56363 -10.26690 -10.14936 -9.92095 -9.86399 -9.72682 -9.60692 -9.01065 -8.87806 -8.42355 -7.34042 -5.84020 -3.19549 0.67973 0.86530 2.55326 2.65562 3.15564 3.29472 3.32206 3.38048 3.39595 4.06310 4.21897 4.33376 4.46089 4.50568 4.51333 4.58786 4.66747 4.78505 4.91740 4.97712 5.01423 5.07884 5.10108 5.12467 5.18751 5.27476 5.30734 5.46254 5.53226 5.55631 5.58372 5.65696 5.72051 5.72768 5.82044 5.88468 5.90510 6.02889 6.09783 6.16474 6.23811 6.33269 6.42562 6.50244 6.61155 6.70464 6.82030 6.82882 7.52955 7.53112 7.92215 8.21438 8.35089 9.13110 9.85732 10.05435 11.34292 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.001934 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.387722 B =14475.211235 C =15201.240462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.514 3.486 7 O -0.551 6.551 8 C -0.137 4.137 9 C -0.102 4.102 10 C 0.056 3.944 11 O -0.306 6.306 12 C 0.084 3.916 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.056 3.944 16 N -0.450 5.450 17 C 0.016 3.984 18 C 0.110 3.890 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.060 0.940 22 N -0.743 5.743 23 C -0.241 4.241 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.932 5.932 27 Si 0.878 3.122 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.052 0.948 50 H 0.360 0.640 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.083 12.521 -15.604 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.302 3.698 7 O -0.430 6.430 8 C -0.177 4.177 9 C -0.140 4.140 10 C -0.019 4.019 11 O -0.218 6.218 12 C 0.036 3.964 13 C -0.138 4.138 14 C -0.152 4.152 15 C -0.102 4.102 16 N -0.159 5.159 17 C -0.142 4.142 18 C -0.012 4.012 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.709 3.291 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.175 0.825 45 H 0.176 0.824 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.086 12.403 -15.301 26.741 hybrid contribution -0.732 -0.619 -1.421 1.714 sum 17.354 11.784 -16.721 26.826 Atomic orbital electron populations 1.21681 0.94206 1.02842 1.00922 1.21750 0.96545 0.99257 0.95574 0.91075 1.21641 0.78846 1.01032 0.98999 1.48176 1.07086 1.60018 1.18377 1.20420 0.89093 0.77702 0.82546 1.90679 1.75599 1.45480 1.31236 1.21549 0.92822 1.03795 0.99578 1.21225 0.90542 1.03903 0.98302 1.22960 0.94348 0.98673 0.85955 1.86094 1.16108 1.77850 1.41796 1.20104 0.83857 0.96788 0.95664 1.20993 0.94249 1.01164 0.97405 1.22041 0.93712 0.99264 1.00163 1.22686 1.00652 0.97216 0.89660 1.67536 1.08852 1.13842 1.25709 1.22990 0.90436 1.01973 0.98842 1.21779 0.96784 0.98733 0.83887 1.22498 1.00018 0.98981 0.97571 1.20184 0.90964 0.86172 0.95253 0.92188 1.42846 1.80604 1.09400 1.05872 1.19050 1.37674 0.94051 0.86327 0.89155 1.24640 1.01510 0.96747 0.96011 1.69691 1.53034 1.10843 1.24420 0.86668 0.78196 0.79574 0.84710 1.21166 1.21710 1.20434 0.91647 0.92308 0.93543 0.91571 0.89477 0.88422 0.88469 0.89898 0.89894 0.91447 0.91440 0.83947 0.84047 0.82512 0.82376 0.90167 0.90732 0.90136 0.92890 0.80598 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.06 37.16 0.34 -1.70 16 2 C -0.11 -1.65 2.67 -90.50 -0.24 -1.89 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.79 5.42 -3.71 -0.02 1.77 16 5 N -0.60 -8.53 2.97 -172.77 -0.51 -9.05 16 6 C 0.51 7.00 7.70 -10.98 -0.08 6.92 16 7 O -0.55 -9.29 15.40 5.56 0.09 -9.20 16 8 C -0.14 -1.26 4.05 -27.88 -0.11 -1.37 16 9 C -0.10 -0.94 4.87 -26.73 -0.13 -1.07 16 10 C 0.06 0.42 4.75 37.15 0.18 0.60 16 11 O -0.31 -2.95 10.15 -19.49 -0.20 -3.15 16 12 C 0.08 0.77 6.71 -39.07 -0.26 0.50 16 13 C -0.11 -0.86 10.13 -39.14 -0.40 -1.26 16 14 C -0.13 -0.83 10.11 -39.47 -0.40 -1.23 16 15 C 0.06 0.42 11.18 -17.54 -0.20 0.22 16 16 N -0.45 -4.46 10.35 -13.12 -0.14 -4.60 16 17 C 0.02 0.14 10.22 -17.37 -0.18 -0.03 16 18 C 0.11 1.49 6.08 -3.71 -0.02 1.47 16 19 C -0.15 -2.19 5.78 -26.61 -0.15 -2.34 16 20 C 0.18 3.14 2.53 -67.89 -0.17 2.97 16 21 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 22 N -0.74 -15.66 3.45 -53.38 -0.18 -15.84 16 23 C -0.24 -6.24 10.41 -15.06 -0.16 -6.40 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.09 13.97 55.49 0.78 -27.31 16 27 Si 0.88 21.20 27.73 -169.99 -4.71 16.49 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 31 H 0.06 1.10 7.54 -51.93 -0.39 0.71 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.10 6.64 -51.93 -0.34 0.76 16 35 H 0.09 1.35 7.01 -51.93 -0.36 0.98 16 36 H 0.10 0.72 7.69 -51.93 -0.40 0.32 16 37 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 38 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 0.86 8.10 -51.93 -0.42 0.43 16 40 H 0.07 0.42 7.68 -51.93 -0.40 0.02 16 41 H 0.07 0.43 7.68 -51.93 -0.40 0.03 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 44 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.16 1.15 6.32 -52.48 -0.33 0.82 16 46 H 0.08 1.27 7.74 -51.93 -0.40 0.87 16 47 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.36 7.66 3.79 -40.82 -0.15 7.51 16 51 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 403.39 15.07 6.08 6.08 Total: -1.00 -32.80 403.39 -9.05 -41.85 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.14 Total: 7.48 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.11 Total: -2.75 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.06 Total: -56.80 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.11 Total: -12.35 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.80 -9.05 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271459607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.540 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds