Wall clock time and date at job start Wed Apr 1 2020 04:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00171 * 2 1 4 4 C 1.50706 * 109.47329 * 179.97438 * 3 2 1 5 5 C 1.38353 * 120.34479 * 90.00080 * 4 3 2 6 6 N 1.31927 * 121.07612 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87895 * 0.02562 * 6 5 4 8 8 C 1.39516 * 120.56961 * 359.97438 * 7 6 5 9 9 C 1.47845 * 120.55932 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99612 * 216.24392 * 9 8 7 11 11 N 1.34766 * 120.00114 * 36.23931 * 9 8 7 12 12 C 1.46931 * 120.63259 * 6.51614 * 11 9 8 13 13 C 1.53190 * 108.77818 * 126.36242 * 12 11 9 14 14 C 1.53044 * 109.30988 * 54.64171 * 13 12 11 15 15 C 1.53043 * 109.53361 * 298.63138 * 14 13 12 16 16 H 1.09003 * 109.49414 * 181.32211 * 15 14 13 17 17 C 1.53007 * 109.52411 * 301.39716 * 15 14 13 18 18 C 1.46928 * 120.63446 * 186.48594 * 11 9 8 19 19 H 1.08998 * 109.69975 * 113.77327 * 18 11 9 20 20 C 1.53006 * 109.58370 * 353.42338 * 18 11 9 21 21 N 1.46497 * 109.46987 * 69.57128 * 20 18 11 22 22 C 1.36942 * 119.99871 * 175.23127 * 21 20 18 23 23 H 1.07999 * 119.99981 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99914 * 180.27473 * 22 21 20 25 25 N 1.31613 * 119.99955 * 359.72876 * 24 22 21 26 26 Si 1.86799 * 119.99683 * 179.72269 * 24 22 21 27 27 H 1.48497 * 109.46916 * 60.00617 * 26 24 22 28 28 H 1.48506 * 109.46884 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47309 * 300.00152 * 26 24 22 30 30 C 1.38360 * 120.34650 * 270.26226 * 4 3 2 31 31 H 1.09003 * 109.47001 * 300.00027 * 1 2 3 32 32 H 1.09000 * 109.46762 * 60.00118 * 1 2 3 33 33 H 1.08998 * 109.46918 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46918 * 60.00020 * 3 2 1 35 35 H 1.08996 * 109.47111 * 299.99992 * 3 2 1 36 36 H 1.07994 * 119.46123 * 0.02562 * 5 4 3 37 37 H 1.08004 * 119.71443 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.58283 * 6.57615 * 12 11 9 39 39 H 1.08993 * 109.70433 * 246.22652 * 12 11 9 40 40 H 1.08996 * 109.49924 * 294.68650 * 13 12 11 41 41 H 1.09001 * 109.49355 * 174.58451 * 13 12 11 42 42 H 1.08998 * 109.45660 * 178.61554 * 14 13 12 43 43 H 1.09002 * 109.46218 * 58.64976 * 14 13 12 44 44 H 1.08998 * 109.46723 * 179.85389 * 17 15 14 45 45 H 1.09000 * 109.47104 * 299.85941 * 17 15 14 46 46 H 1.08996 * 109.46794 * 59.85557 * 17 15 14 47 47 H 1.08998 * 109.46624 * 309.57543 * 20 18 11 48 48 H 1.08998 * 109.46822 * 189.57317 * 20 18 11 49 49 H 0.97003 * 120.00756 * 355.23403 * 21 20 18 50 50 H 0.97007 * 120.00037 * 179.97438 * 25 24 22 51 51 H 1.07994 * 120.85782 * 0.04114 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2099 1.1311 -1.1931 6 7 5.5250 1.0274 -1.2093 7 6 6.2321 0.9716 -0.0997 8 6 5.6040 1.0215 1.1451 9 6 6.3981 0.9594 2.3907 10 8 5.9625 0.3698 3.3602 11 7 7.6048 1.5564 2.4510 12 6 8.0834 2.3913 1.3407 13 6 8.4840 3.7631 1.8924 14 6 9.4996 3.5774 3.0221 15 6 8.8630 2.7685 4.1546 16 1 9.5791 2.6566 4.9688 17 6 7.6182 3.4965 4.6659 18 6 8.4666 1.3854 3.6286 19 1 9.3621 0.8296 3.3510 20 6 7.7055 0.6224 4.7147 21 7 7.5128 -0.7668 4.2916 22 6 6.9396 -1.6698 5.1468 23 1 6.6292 -1.3577 6.1330 24 6 6.7621 -2.9875 4.7479 25 7 7.1399 -3.3677 3.5458 26 14 5.9873 -4.2210 5.9173 27 1 4.6200 -3.7686 6.2792 28 1 5.9112 -5.5489 5.2568 29 1 6.8152 -4.3263 7.1455 30 6 4.2086 1.1260 1.1949 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6886 1.8464 0.8901 35 1 1.6887 1.8464 -0.8900 36 1 3.6689 1.1742 -2.1267 37 1 7.3074 0.8864 -0.1538 38 1 7.2882 2.5114 0.6048 39 1 8.9468 1.9196 0.8719 40 1 7.6007 4.2726 2.2773 41 1 8.9304 4.3591 1.0963 42 1 9.8049 4.5531 3.3999 43 1 10.3722 3.0459 2.6422 44 1 7.1641 2.9184 5.4706 45 1 7.9008 4.4805 5.0400 46 1 6.9030 3.6092 3.8511 47 1 6.7347 1.0912 4.8755 48 1 8.2775 0.6437 5.6423 49 1 7.7912 -1.0472 3.4056 50 1 7.0163 -4.2887 3.2672 51 1 3.6892 1.1623 2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482492453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:34 Heat of formation + Delta-G solvation = 18.132939 kcal Electronic energy + Delta-G solvation = -32475.824847 eV Core-core repulsion = 28377.764371 eV Total energy + Delta-G solvation = -4098.060477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.89397 -39.70110 -37.86525 -37.19883 -34.66011 -33.53130 -32.88228 -32.12014 -31.43285 -30.08376 -27.66321 -27.06503 -26.18406 -25.61456 -24.56990 -23.79886 -22.76268 -22.30211 -21.16438 -19.92146 -18.45594 -17.33837 -16.96013 -16.66907 -16.56335 -16.45159 -15.58455 -15.42276 -15.18928 -15.14689 -14.81378 -14.28970 -13.93181 -13.78952 -13.56272 -13.41993 -13.13900 -13.03906 -12.87215 -12.82986 -12.56314 -12.46679 -12.33258 -12.05163 -11.83871 -11.58531 -11.53835 -11.27447 -10.97994 -10.85989 -10.67332 -10.61408 -10.32542 -10.19852 -9.91295 -9.87083 -9.73684 -9.58875 -9.48549 -8.96535 -8.71945 -8.29848 -8.06718 -6.51302 -5.54192 -2.73221 0.85098 1.22458 3.21530 3.31911 3.56527 3.60471 3.61759 3.71253 4.06878 4.37649 4.64253 4.70930 4.74231 4.78200 4.84373 4.89568 4.96745 4.98084 5.07626 5.10935 5.12907 5.18631 5.24908 5.31281 5.43967 5.51090 5.52572 5.59862 5.63493 5.73796 5.79384 5.81479 5.83780 5.89859 5.95365 6.01885 6.14521 6.14729 6.18652 6.21148 6.32220 6.51052 6.55782 6.59251 6.70508 6.94781 6.95466 7.30754 7.88051 7.88855 7.92584 8.63871 8.87288 9.74880 10.34590 10.68398 11.69493 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006660 B = 0.005102 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4202.919134 B = 5486.434951 C = 8559.463530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.110 3.890 4 C -0.153 4.153 5 C 0.126 3.874 6 N -0.489 5.489 7 C 0.128 3.872 8 C -0.159 4.159 9 C 0.519 3.481 10 O -0.432 6.432 11 N -0.607 5.607 12 C 0.099 3.901 13 C -0.135 4.135 14 C -0.113 4.113 15 C -0.100 4.100 16 H 0.079 0.921 17 C -0.144 4.144 18 C 0.149 3.851 19 H 0.070 0.930 20 C 0.158 3.842 21 N -0.697 5.697 22 C -0.209 4.209 23 H 0.065 0.935 24 C -0.020 4.020 25 N -0.936 5.936 26 Si 0.902 3.098 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.289 1.289 30 C -0.007 4.007 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.014 0.986 49 H 0.379 0.621 50 H 0.251 0.749 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 18.716 -9.216 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.033 3.967 4 C -0.155 4.155 5 C -0.031 4.031 6 N -0.197 5.197 7 C -0.030 4.030 8 C -0.164 4.164 9 C 0.303 3.697 10 O -0.300 6.300 11 N -0.345 5.345 12 C -0.024 4.024 13 C -0.174 4.174 14 C -0.150 4.150 15 C -0.120 4.120 16 H 0.097 0.903 17 C -0.201 4.201 18 C 0.045 3.955 19 H 0.088 0.912 20 C 0.031 3.969 21 N -0.339 5.339 22 C -0.341 4.341 23 H 0.083 0.917 24 C -0.215 4.215 25 N -0.586 5.586 26 Si 0.734 3.266 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.216 1.216 30 C -0.033 4.033 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.031 0.969 49 H 0.212 0.788 50 H 0.061 0.939 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.888 18.064 -9.291 20.682 hybrid contribution -0.960 -0.689 0.951 1.517 sum -4.849 17.374 -8.340 19.873 Atomic orbital electron populations 1.22768 0.80878 1.03054 0.99861 1.88045 1.19679 1.27039 1.95359 1.21201 0.88935 0.85429 1.01101 1.20477 0.95530 1.05127 0.94366 1.22714 0.90057 0.93166 0.97200 1.67727 1.07830 1.13109 1.31009 1.23218 1.00517 0.92433 0.86823 1.21228 0.94982 1.04346 0.95865 1.17965 0.82260 0.81655 0.87797 1.91191 1.67649 1.37153 1.34031 1.47631 1.17499 1.50616 1.18754 1.21991 0.99901 0.90866 0.89651 1.21958 0.99946 0.96951 0.98497 1.21534 0.97906 0.99929 0.95653 1.21465 0.97866 0.94987 0.97636 0.90262 1.21848 0.97612 0.99229 1.01399 1.21514 0.93317 0.94767 0.85855 0.91245 1.21014 0.96803 0.86784 0.92342 1.42280 1.71570 1.03492 1.16560 1.19092 1.30347 0.89306 0.95316 0.91741 1.24617 1.02850 0.97269 0.96740 1.69638 1.53991 1.16740 1.18269 0.86326 0.79252 0.81025 0.80008 1.21629 1.21960 1.21629 1.21528 0.92535 0.90702 0.98546 0.93937 0.94075 0.89429 0.92132 0.92073 0.82742 0.81921 0.89668 0.91553 0.91276 0.91260 0.92021 0.91842 0.91976 0.93475 0.92548 0.93451 0.96893 0.78770 0.93920 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.05 10.69 -35.23 -0.38 -5.43 16 3 C 0.11 1.19 6.08 36.01 0.22 1.41 16 4 C -0.15 -2.04 5.52 -104.53 -0.58 -2.62 16 5 C 0.13 1.63 10.85 -17.47 -0.19 1.44 16 6 N -0.49 -7.14 10.35 -12.91 -0.13 -7.27 16 7 C 0.13 1.91 8.56 -17.13 -0.15 1.77 16 8 C -0.16 -2.65 5.25 -104.82 -0.55 -3.20 16 9 C 0.52 9.80 6.78 -12.33 -0.08 9.72 16 10 O -0.43 -10.28 10.73 5.32 0.06 -10.22 16 11 N -0.61 -9.49 2.41 -166.33 -0.40 -9.89 16 12 C 0.10 1.15 4.80 -3.71 -0.02 1.14 16 13 C -0.14 -1.32 5.74 -26.61 -0.15 -1.47 16 14 C -0.11 -1.14 5.43 -26.69 -0.14 -1.28 16 15 C -0.10 -1.26 2.80 -90.50 -0.25 -1.51 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 17 C -0.14 -1.81 8.22 37.16 0.31 -1.51 16 18 C 0.15 2.44 2.63 -67.60 -0.18 2.27 16 19 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 20 C 0.16 3.35 4.05 -4.04 -0.02 3.33 16 21 N -0.70 -18.57 3.25 -59.91 -0.19 -18.77 16 22 C -0.21 -6.20 9.71 -15.06 -0.15 -6.35 16 23 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 25 N -0.94 -30.06 13.06 55.49 0.72 -29.34 16 26 Si 0.90 23.99 29.55 -169.99 -5.02 18.97 16 27 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 29 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 30 C -0.01 -0.10 9.44 -38.87 -0.37 -0.47 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.58 8.09 -51.92 -0.42 0.16 16 35 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.16 2.20 6.20 -52.48 -0.33 1.87 16 38 H 0.09 0.96 4.58 -51.93 -0.24 0.72 16 39 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 47 H 0.05 1.08 5.03 -51.93 -0.26 0.82 16 48 H 0.01 0.29 8.13 -51.93 -0.42 -0.14 16 49 H 0.38 10.80 7.10 -40.82 -0.29 10.51 16 50 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 51 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -36.25 393.42 -8.67 -44.92 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.97 Total: 7.74 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.28 Total: 3.36 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.00 Total: -65.27 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.32 Total: -15.65 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.02 Total: 18.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.25 -8.67 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482492453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.057 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds