Wall clock time and date at job start Wed Apr 1 2020 04:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.78477 * 2 1 4 4 C 1.53692 * 109.79523 * 239.31843 * 2 1 3 5 5 N 1.46903 * 109.25755 * 294.42036 * 4 2 1 6 6 C 1.46897 * 110.99973 * 172.61165 * 5 4 2 7 7 C 1.50706 * 109.47068 * 314.30025 * 6 5 4 8 8 C 1.38264 * 119.94376 * 269.72528 * 7 6 5 9 9 C 1.38145 * 120.05268 * 179.72140 * 8 7 6 10 10 C 1.38727 * 119.94758 * 0.53423 * 9 8 7 11 11 O 1.35900 * 120.06033 * 179.72135 * 10 9 8 12 12 C 1.42896 * 116.99528 * 0.02562 * 11 10 9 13 13 C 1.50707 * 109.46875 * 179.97438 * 12 11 10 14 14 N 1.34769 * 120.00043 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00019 * 0.02562 * 13 12 11 16 16 C 1.38743 * 119.88511 * 359.74288 * 10 9 8 17 17 C 1.38140 * 119.94256 * 359.97438 * 16 10 9 18 18 C 1.46897 * 111.26829 * 296.75819 * 5 4 2 19 19 C 1.53247 * 109.33862 * 63.10416 * 18 5 4 20 20 H 1.08997 * 109.78479 * 65.97782 * 19 18 5 21 21 C 1.53007 * 109.62405 * 186.45892 * 19 18 5 22 22 N 1.47074 * 108.51990 * 306.16776 * 19 18 5 23 23 C 1.36942 * 120.88247 * 231.18498 * 22 19 18 24 24 H 1.08000 * 119.99807 * 26.85437 * 23 22 19 25 25 C 1.38807 * 120.00099 * 206.85408 * 23 22 19 26 26 N 1.31622 * 120.00365 * 17.11391 * 25 23 22 27 27 Si 1.86796 * 119.99992 * 197.11679 * 25 23 22 28 28 H 1.48503 * 109.47291 * 269.99824 * 27 25 23 29 29 H 1.48507 * 109.47119 * 29.99690 * 27 25 23 30 30 H 1.48499 * 109.47429 * 149.99807 * 27 25 23 31 31 H 1.09003 * 109.47544 * 299.52027 * 1 2 3 32 32 H 1.09003 * 109.47276 * 59.51348 * 1 2 3 33 33 H 1.08994 * 109.47815 * 179.51490 * 1 2 3 34 34 H 1.09007 * 109.64794 * 174.41995 * 4 2 1 35 35 H 1.08997 * 109.42421 * 54.28484 * 4 2 1 36 36 H 1.09000 * 109.47695 * 74.29894 * 6 5 4 37 37 H 1.08999 * 109.47158 * 194.30666 * 6 5 4 38 38 H 1.08003 * 119.97431 * 359.97438 * 8 7 6 39 39 H 1.08000 * 120.02734 * 180.25526 * 9 8 7 40 40 H 1.09001 * 109.47301 * 299.99225 * 12 11 10 41 41 H 1.08997 * 109.47720 * 60.00125 * 12 11 10 42 42 H 0.97004 * 120.00203 * 0.02562 * 14 13 12 43 43 H 0.97003 * 120.00013 * 180.02562 * 14 13 12 44 44 H 1.08001 * 120.02455 * 179.97438 * 16 10 9 45 45 H 1.07999 * 119.97223 * 179.97438 * 17 16 10 46 46 H 1.09004 * 109.49264 * 303.14537 * 18 5 4 47 47 H 1.08999 * 109.49345 * 183.06252 * 18 5 4 48 48 H 1.09001 * 109.46193 * 179.02750 * 21 19 18 49 49 H 1.08993 * 109.47223 * 299.02652 * 21 19 18 50 50 H 1.08997 * 109.46858 * 59.03555 * 21 19 18 51 51 H 0.96996 * 120.00550 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0505 -0.7379 -1.2437 5 7 1.6751 -2.1556 -1.1584 6 6 1.9988 -2.8618 -2.4051 7 6 1.5425 -2.0383 -3.5819 8 6 0.2691 -2.2104 -4.0925 9 6 -0.1535 -1.4527 -5.1675 10 6 0.7047 -0.5264 -5.7419 11 8 0.2932 0.2162 -6.8031 12 6 -1.0365 -0.0086 -7.2755 13 6 -1.3133 0.8980 -8.4471 14 7 -2.5130 0.8601 -9.0598 15 8 -0.4561 1.6612 -8.8391 16 6 1.9839 -0.3596 -5.2313 17 6 2.3997 -1.1156 -4.1525 18 6 2.3100 -2.8064 -0.0046 19 6 1.8055 -2.1542 1.2871 20 1 0.7419 -2.3572 1.4118 21 6 2.5793 -2.7148 2.4821 22 7 2.0240 -0.7028 1.1938 23 6 2.6654 -0.0228 2.1946 24 1 3.3781 -0.5345 2.8243 25 6 2.3995 1.3240 2.3996 26 7 1.3175 1.8673 1.8833 27 14 3.5773 2.3656 3.4082 28 1 3.1755 2.3239 4.8372 29 1 4.9559 1.8322 3.2659 30 1 3.5368 3.7686 2.9234 31 1 -0.3634 0.5064 0.8943 32 1 -0.3634 0.5214 -0.8856 33 1 -0.3634 -1.0275 -0.0087 34 1 3.1360 -0.6515 -1.2936 35 1 1.6086 -0.2978 -2.1376 36 1 3.0760 -3.0166 -2.4660 37 1 1.4917 -3.8265 -2.4184 38 1 -0.3971 -2.9350 -3.6479 39 1 -1.1497 -1.5846 -5.5633 40 1 -1.1404 -1.0479 -7.5875 41 1 -1.7468 0.2037 -6.4766 42 1 -3.1986 0.2494 -8.7466 43 1 -2.6911 1.4434 -9.8142 44 1 2.6540 0.3606 -5.6770 45 1 3.3955 -0.9865 -3.7549 46 1 3.3918 -2.6911 -0.0718 47 1 2.0564 -3.8665 0.0000 48 1 2.2304 -2.2367 3.3973 49 1 2.4156 -3.7903 2.5487 50 1 3.6431 -2.5165 2.3513 51 1 1.1319 2.8086 2.0262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878773710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:59 Heat of formation + Delta-G solvation = -9.189851 kcal Electronic energy + Delta-G solvation = -31233.921906 eV Core-core repulsion = 27134.676625 eV Total energy + Delta-G solvation = -4099.245282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.59827 -39.59079 -38.60081 -37.29306 -34.66325 -34.17471 -32.52710 -31.54610 -31.07162 -30.33188 -28.72447 -27.67385 -25.90900 -25.78423 -23.88217 -23.02334 -22.23410 -21.34010 -20.88818 -20.20436 -18.60465 -18.43578 -18.02628 -16.74307 -16.63917 -16.21404 -15.81353 -15.51007 -15.36906 -14.66087 -14.48838 -14.34750 -14.28537 -13.97300 -13.77245 -13.64045 -13.35107 -13.19204 -12.93629 -12.73011 -12.54072 -11.82806 -11.72332 -11.53748 -11.46021 -11.25760 -11.04916 -10.90559 -10.81448 -10.78565 -10.49024 -10.45328 -10.38754 -10.33420 -10.19584 -9.96863 -9.84392 -9.38686 -9.14832 -8.91288 -8.40167 -8.14979 -7.63554 -6.54999 -5.69391 -3.10068 1.35365 1.43543 2.14201 2.39472 3.40974 3.48858 3.50161 3.51530 3.72958 4.31277 4.53935 4.55921 4.63602 4.65698 4.81395 4.85849 4.98147 5.31180 5.37834 5.40132 5.46098 5.54832 5.72035 5.80131 5.89272 5.96469 6.07150 6.16781 6.18905 6.24690 6.27841 6.31298 6.34813 6.38038 6.43900 6.49552 6.67465 6.70662 6.74814 6.80783 6.92343 7.01650 7.09859 7.18512 7.27822 7.31006 7.60542 7.67223 7.77021 7.80841 7.93688 8.03100 8.53419 9.31691 9.94514 10.52746 11.37870 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.002544 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.087107 B =11004.578631 C =12150.295189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.199 3.801 3 H 0.093 0.907 4 C 0.038 3.962 5 N -0.523 5.523 6 C 0.094 3.906 7 C -0.104 4.104 8 C -0.059 4.059 9 C -0.210 4.210 10 C 0.120 3.880 11 O -0.292 6.292 12 C 0.040 3.960 13 C 0.520 3.480 14 N -0.852 5.852 15 O -0.518 6.518 16 C -0.145 4.145 17 C -0.069 4.069 18 C 0.049 3.951 19 C 0.172 3.828 20 H 0.032 0.968 21 C -0.138 4.138 22 N -0.585 5.585 23 C -0.247 4.247 24 H 0.069 0.931 25 C 0.001 3.999 26 N -0.898 5.898 27 Si 0.896 3.104 28 H -0.289 1.289 29 H -0.282 1.282 30 H -0.291 1.291 31 H 0.071 0.929 32 H 0.018 0.982 33 H 0.032 0.968 34 H 0.020 0.980 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.403 0.597 43 H 0.408 0.592 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.027 0.973 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.051 0.949 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -9.752 -18.147 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.093 3.907 3 H 0.111 0.889 4 C -0.091 4.091 5 N -0.248 5.248 6 C -0.034 4.034 7 C -0.105 4.105 8 C -0.078 4.078 9 C -0.229 4.229 10 C 0.075 3.925 11 O -0.205 6.205 12 C -0.039 4.039 13 C 0.303 3.697 14 N -0.419 5.419 15 O -0.391 6.391 16 C -0.164 4.164 17 C -0.088 4.088 18 C -0.080 4.080 19 C 0.065 3.935 20 H 0.050 0.950 21 C -0.196 4.196 22 N -0.308 5.308 23 C -0.377 4.377 24 H 0.087 0.913 25 C -0.197 4.197 26 N -0.543 5.543 27 Si 0.727 3.273 28 H -0.216 1.216 29 H -0.208 1.208 30 H -0.217 1.217 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.232 0.768 43 H 0.240 0.760 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.045 0.955 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.898 -9.021 -18.248 21.493 hybrid contribution 0.673 0.498 0.269 0.879 sum -6.226 -8.523 -17.979 20.848 Atomic orbital electron populations 1.21914 0.98023 0.98910 1.00245 1.20484 0.92489 0.95696 0.82068 0.88928 1.23050 0.97137 0.87718 1.01158 1.62114 1.58720 1.03101 1.00842 1.21057 0.98002 0.96316 0.88005 1.19729 0.94587 0.98737 0.97412 1.20773 0.95046 0.97953 0.94019 1.21136 0.99982 1.00717 1.01081 1.18964 0.94072 0.91717 0.87724 1.86133 1.29062 1.59923 1.45409 1.22396 0.85633 0.99687 0.96174 1.20122 0.82390 0.83441 0.83754 1.43656 1.15516 1.45474 1.37216 1.90818 1.44951 1.38837 1.64545 1.20362 0.94237 1.03040 0.98759 1.20928 0.99723 0.94147 0.94005 1.22675 0.96039 0.97028 0.92259 1.20446 0.96392 0.85970 0.90727 0.95009 1.21806 1.00443 0.97946 0.99364 1.44318 1.66855 1.01129 1.18539 1.19166 1.15849 0.92386 1.10254 0.91314 1.24986 0.96563 0.98650 0.99534 1.70013 1.23735 1.12045 1.48485 0.86396 0.81070 0.80010 0.79862 1.21632 1.20767 1.21719 0.91022 0.96289 0.94897 0.96160 0.91494 0.94806 0.90681 0.85566 0.85800 0.88916 0.88705 0.76839 0.76025 0.85183 0.85502 0.95452 0.92285 0.91836 0.94301 0.93027 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.97 37.16 0.33 -2.71 16 2 C 0.20 4.70 2.37 -67.26 -0.16 4.54 16 3 H 0.09 2.51 6.12 -51.93 -0.32 2.19 16 4 C 0.04 0.76 4.19 -3.46 -0.01 0.74 16 5 N -0.52 -9.16 4.26 -235.46 -1.00 -10.16 16 6 C 0.09 1.32 5.42 -4.97 -0.03 1.30 16 7 C -0.10 -1.42 4.13 -104.60 -0.43 -1.85 16 8 C -0.06 -0.73 9.69 -39.61 -0.38 -1.11 16 9 C -0.21 -2.37 9.04 -39.43 -0.36 -2.72 16 10 C 0.12 1.55 6.69 -39.21 -0.26 1.29 16 11 O -0.29 -3.77 9.67 -39.34 -0.38 -4.15 16 12 C 0.04 0.33 5.22 36.01 0.19 0.52 16 13 C 0.52 4.81 8.18 -10.99 -0.09 4.72 16 14 N -0.85 -3.65 8.87 31.22 0.28 -3.37 16 15 O -0.52 -7.62 17.34 -14.35 -0.25 -7.87 16 16 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 16 17 C -0.07 -0.94 7.75 -39.61 -0.31 -1.25 16 18 C 0.05 0.88 4.87 -3.70 -0.02 0.86 16 19 C 0.17 3.56 3.25 -67.49 -0.22 3.34 16 20 H 0.03 0.71 7.62 -51.93 -0.40 0.31 16 21 C -0.14 -2.56 7.94 37.16 0.29 -2.27 16 22 N -0.59 -14.26 2.73 -156.74 -0.43 -14.69 16 23 C -0.25 -6.57 8.71 -15.06 -0.13 -6.70 16 24 H 0.07 1.80 6.18 -52.49 -0.32 1.47 16 25 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 26 N -0.90 -25.38 9.79 55.49 0.54 -24.84 16 27 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 31 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.03 0.73 7.07 -51.93 -0.37 0.36 16 34 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 35 H 0.07 1.29 5.54 -51.93 -0.29 1.00 16 36 H 0.03 0.47 8.02 -51.93 -0.42 0.05 16 37 H 0.07 0.94 8.08 -51.93 -0.42 0.53 16 38 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.12 1.00 6.30 -52.49 -0.33 0.66 16 40 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 41 H 0.10 0.59 7.66 -51.93 -0.40 0.19 16 42 H 0.40 0.33 8.83 -40.82 -0.36 -0.03 16 43 H 0.41 1.44 8.93 -40.82 -0.36 1.07 16 44 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 48 H 0.06 1.27 7.52 -51.93 -0.39 0.88 16 49 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.05 0.97 7.59 -51.93 -0.39 0.58 16 51 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -33.86 398.08 -10.37 -44.23 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.04 Total: 1.94 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.06 Total: -3.72 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.61 Total: -53.06 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.63 Total: -12.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.86 -10.37 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.041 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds