Wall clock time and date at job start Wed Apr 1 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.78477 * 2 1 4 4 C 1.53692 * 109.79523 * 239.31843 * 2 1 3 5 5 N 1.46903 * 109.25755 * 294.42036 * 4 2 1 6 6 C 1.46897 * 110.99973 * 172.61165 * 5 4 2 7 7 C 1.50706 * 109.47068 * 314.30025 * 6 5 4 8 8 C 1.38264 * 119.94376 * 269.72528 * 7 6 5 9 9 C 1.38145 * 120.05268 * 179.72140 * 8 7 6 10 10 C 1.38727 * 119.94758 * 0.53423 * 9 8 7 11 11 O 1.35900 * 120.06033 * 179.72135 * 10 9 8 12 12 C 1.42896 * 116.99528 * 0.02562 * 11 10 9 13 13 C 1.50707 * 109.46875 * 179.97438 * 12 11 10 14 14 N 1.34769 * 120.00043 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00019 * 0.02562 * 13 12 11 16 16 C 1.38743 * 119.88511 * 359.74288 * 10 9 8 17 17 C 1.38140 * 119.94256 * 359.97438 * 16 10 9 18 18 C 1.46897 * 111.26829 * 296.75819 * 5 4 2 19 19 C 1.53247 * 109.33862 * 63.10416 * 18 5 4 20 20 H 1.08997 * 109.78479 * 65.97782 * 19 18 5 21 21 C 1.53007 * 109.62405 * 186.45892 * 19 18 5 22 22 N 1.47074 * 108.51990 * 306.16776 * 19 18 5 23 23 C 1.36942 * 120.88247 * 231.18498 * 22 19 18 24 24 H 1.08000 * 119.99807 * 26.85437 * 23 22 19 25 25 C 1.38807 * 120.00099 * 206.85408 * 23 22 19 26 26 N 1.31622 * 120.00365 * 17.11391 * 25 23 22 27 27 Si 1.86796 * 119.99992 * 197.11679 * 25 23 22 28 28 H 1.48503 * 109.47291 * 269.99824 * 27 25 23 29 29 H 1.48507 * 109.47119 * 29.99690 * 27 25 23 30 30 H 1.48499 * 109.47429 * 149.99807 * 27 25 23 31 31 H 1.09003 * 109.47544 * 299.52027 * 1 2 3 32 32 H 1.09003 * 109.47276 * 59.51348 * 1 2 3 33 33 H 1.08994 * 109.47815 * 179.51490 * 1 2 3 34 34 H 1.09007 * 109.64794 * 174.41995 * 4 2 1 35 35 H 1.08997 * 109.42421 * 54.28484 * 4 2 1 36 36 H 1.09000 * 109.47695 * 74.29894 * 6 5 4 37 37 H 1.08999 * 109.47158 * 194.30666 * 6 5 4 38 38 H 1.08003 * 119.97431 * 359.97438 * 8 7 6 39 39 H 1.08000 * 120.02734 * 180.25526 * 9 8 7 40 40 H 1.09001 * 109.47301 * 299.99225 * 12 11 10 41 41 H 1.08997 * 109.47720 * 60.00125 * 12 11 10 42 42 H 0.97004 * 120.00203 * 0.02562 * 14 13 12 43 43 H 0.97003 * 120.00013 * 180.02562 * 14 13 12 44 44 H 1.08001 * 120.02455 * 179.97438 * 16 10 9 45 45 H 1.07999 * 119.97223 * 179.97438 * 17 16 10 46 46 H 1.09004 * 109.49264 * 303.14537 * 18 5 4 47 47 H 1.08999 * 109.49345 * 183.06252 * 18 5 4 48 48 H 1.09001 * 109.46193 * 179.02750 * 21 19 18 49 49 H 1.08993 * 109.47223 * 299.02652 * 21 19 18 50 50 H 1.08997 * 109.46858 * 59.03555 * 21 19 18 51 51 H 0.96996 * 120.00550 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0505 -0.7379 -1.2437 5 7 1.6751 -2.1556 -1.1584 6 6 1.9988 -2.8618 -2.4051 7 6 1.5425 -2.0383 -3.5819 8 6 0.2691 -2.2104 -4.0925 9 6 -0.1535 -1.4527 -5.1675 10 6 0.7047 -0.5264 -5.7419 11 8 0.2932 0.2162 -6.8031 12 6 -1.0365 -0.0086 -7.2755 13 6 -1.3133 0.8980 -8.4471 14 7 -2.5130 0.8601 -9.0598 15 8 -0.4561 1.6612 -8.8391 16 6 1.9839 -0.3596 -5.2313 17 6 2.3997 -1.1156 -4.1525 18 6 2.3100 -2.8064 -0.0046 19 6 1.8055 -2.1542 1.2871 20 1 0.7419 -2.3572 1.4118 21 6 2.5793 -2.7148 2.4821 22 7 2.0240 -0.7028 1.1938 23 6 2.6654 -0.0228 2.1946 24 1 3.3781 -0.5345 2.8243 25 6 2.3995 1.3240 2.3996 26 7 1.3175 1.8673 1.8833 27 14 3.5773 2.3656 3.4082 28 1 3.1755 2.3239 4.8372 29 1 4.9559 1.8322 3.2659 30 1 3.5368 3.7686 2.9234 31 1 -0.3634 0.5064 0.8943 32 1 -0.3634 0.5214 -0.8856 33 1 -0.3634 -1.0275 -0.0087 34 1 3.1360 -0.6515 -1.2936 35 1 1.6086 -0.2978 -2.1376 36 1 3.0760 -3.0166 -2.4660 37 1 1.4917 -3.8265 -2.4184 38 1 -0.3971 -2.9350 -3.6479 39 1 -1.1497 -1.5846 -5.5633 40 1 -1.1404 -1.0479 -7.5875 41 1 -1.7468 0.2037 -6.4766 42 1 -3.1986 0.2494 -8.7466 43 1 -2.6911 1.4434 -9.8142 44 1 2.6540 0.3606 -5.6770 45 1 3.3955 -0.9865 -3.7549 46 1 3.3918 -2.6911 -0.0718 47 1 2.0564 -3.8665 0.0000 48 1 2.2304 -2.2367 3.3973 49 1 2.4156 -3.7903 2.5487 50 1 3.6431 -2.5165 2.3513 51 1 1.1319 2.8086 2.0262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878773710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:58 Heat of formation + Delta-G solvation = -32.777688 kcal Electronic energy + Delta-G solvation = -31234.944752 eV Core-core repulsion = 27134.676625 eV Total energy + Delta-G solvation = -4100.268127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.46239 -40.55406 -39.86900 -38.41014 -36.18030 -34.80076 -34.23256 -33.24389 -32.08085 -31.53022 -29.73029 -29.23871 -27.48216 -27.10452 -25.66269 -23.93814 -23.62060 -22.66481 -21.83547 -21.40979 -20.28454 -19.36687 -18.62507 -17.99746 -17.41846 -17.35412 -17.15314 -16.68119 -16.61696 -16.22048 -15.66357 -15.55450 -15.39320 -15.34136 -15.03583 -14.96527 -14.83784 -14.47187 -14.27616 -13.76327 -13.57213 -13.40420 -13.23681 -12.93393 -12.87999 -12.81261 -12.73437 -12.39148 -12.26038 -12.16524 -12.10605 -11.90344 -11.82940 -11.73510 -11.58151 -11.17116 -11.12004 -10.94066 -10.76080 -10.42157 -9.88514 -9.25085 -8.93813 -8.49288 -7.74919 -5.16580 0.40972 0.47055 1.46313 1.47027 1.49175 1.56578 1.73206 2.56077 2.72574 2.86654 3.29179 3.40282 3.66972 3.77253 3.89700 3.96869 3.97824 4.10932 4.13733 4.29243 4.36616 4.39735 4.48473 4.54244 4.56074 4.65618 4.67782 4.81212 4.81497 4.88944 4.91871 4.93888 5.04383 5.12344 5.15097 5.28104 5.31590 5.36108 5.40168 5.47631 5.60023 5.74007 5.74114 5.75933 5.80810 5.85395 6.03913 6.28343 6.30254 6.37419 6.47932 6.52323 7.25005 7.28121 8.00246 8.52899 9.29778 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.002544 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.087107 B =11004.578631 C =12150.295189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.196 3.804 3 H 0.050 0.950 4 C 0.060 3.940 5 N -0.527 5.527 6 C 0.098 3.902 7 C -0.120 4.120 8 C -0.060 4.060 9 C -0.203 4.203 10 C 0.115 3.885 11 O -0.322 6.322 12 C 0.032 3.968 13 C 0.516 3.484 14 N -0.824 5.824 15 O -0.585 6.585 16 C -0.167 4.167 17 C -0.079 4.079 18 C 0.058 3.942 19 C 0.163 3.837 20 H 0.020 0.980 21 C -0.129 4.129 22 N -0.601 5.601 23 C -0.248 4.248 24 H 0.071 0.929 25 C -0.052 4.052 26 N -0.923 5.923 27 Si 0.953 3.047 28 H -0.288 1.288 29 H -0.276 1.276 30 H -0.299 1.299 31 H 0.035 0.965 32 H 0.027 0.973 33 H 0.040 0.960 34 H 0.006 0.994 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.101 0.899 38 H 0.147 0.853 39 H 0.162 0.838 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.423 0.577 43 H 0.414 0.586 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.020 0.980 47 H 0.094 0.906 48 H 0.041 0.959 49 H 0.077 0.923 50 H 0.045 0.955 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -12.565 -19.112 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.069 0.931 4 C -0.069 4.069 5 N -0.251 5.251 6 C -0.029 4.029 7 C -0.121 4.121 8 C -0.079 4.079 9 C -0.221 4.221 10 C 0.070 3.930 11 O -0.235 6.235 12 C -0.046 4.046 13 C 0.301 3.699 14 N -0.391 5.391 15 O -0.465 6.465 16 C -0.186 4.186 17 C -0.097 4.097 18 C -0.071 4.071 19 C 0.057 3.943 20 H 0.038 0.962 21 C -0.187 4.187 22 N -0.324 5.324 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.247 4.247 26 N -0.570 5.570 27 Si 0.783 3.217 28 H -0.215 1.215 29 H -0.201 1.201 30 H -0.225 1.225 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.256 0.744 43 H 0.247 0.753 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.038 0.962 47 H 0.112 0.888 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.064 0.936 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.364 -11.898 -19.226 24.107 hybrid contribution 1.000 1.310 0.483 1.717 sum -7.365 -10.588 -18.743 22.752 Atomic orbital electron populations 1.21662 0.97728 0.98820 0.98834 1.20358 0.92596 0.94310 0.83785 0.93142 1.22635 0.95914 0.89339 0.99046 1.62061 1.58715 1.01847 1.02490 1.21109 0.98611 0.96880 0.86258 1.19777 0.95448 0.99154 0.97708 1.21062 0.94608 0.98165 0.94022 1.21486 1.01190 0.99215 1.00228 1.19089 0.94058 0.91997 0.87833 1.86101 1.31661 1.60354 1.45405 1.22774 0.84073 1.01340 0.96404 1.20467 0.82773 0.82765 0.83941 1.43467 1.14373 1.45000 1.36298 1.90795 1.47299 1.41728 1.66642 1.20474 0.95212 1.03521 0.99358 1.20940 0.99850 0.94632 0.94323 1.22546 0.95384 0.98457 0.90723 1.20679 0.96171 0.84016 0.93417 0.96230 1.21713 0.99499 1.00081 0.97373 1.44551 1.66841 1.02795 1.18256 1.19446 1.15519 0.92697 1.10138 0.91122 1.25628 0.97951 0.99842 1.01284 1.70178 1.25120 1.11537 1.50121 0.85491 0.79618 0.78119 0.78472 1.21519 1.20144 1.22530 0.94590 0.95382 0.94048 0.97600 0.90945 0.94552 0.88118 0.83551 0.82062 0.85382 0.86200 0.74420 0.75345 0.85749 0.85976 0.96217 0.88755 0.93977 0.90436 0.93596 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.19 8.97 71.98 0.65 -4.54 16 2 C 0.20 9.43 2.37 45.11 0.11 9.53 16 3 H 0.05 2.85 6.12 -2.39 -0.01 2.84 16 4 C 0.06 2.35 4.19 86.54 0.36 2.72 16 5 N -0.53 -17.27 4.26 -898.85 -3.83 -21.10 16 6 C 0.10 2.48 5.42 85.56 0.46 2.95 16 7 C -0.12 -3.01 4.13 -19.85 -0.08 -3.10 16 8 C -0.06 -1.27 9.69 22.25 0.22 -1.05 16 9 C -0.20 -3.87 9.04 22.36 0.20 -3.67 16 10 C 0.12 2.81 6.69 22.51 0.15 2.96 16 11 O -0.32 -7.98 9.67 -73.39 -0.71 -8.69 16 12 C 0.03 0.43 5.22 71.24 0.37 0.81 16 13 C 0.52 8.84 8.18 87.66 0.72 9.56 16 14 N -0.82 -5.09 8.87 -173.54 -1.54 -6.63 16 15 O -0.59 -17.53 17.34 16.01 0.28 -17.25 16 16 C -0.17 -4.51 9.99 22.37 0.22 -4.29 16 17 C -0.08 -2.10 7.75 22.25 0.17 -1.93 16 18 C 0.06 1.92 4.87 86.39 0.42 2.34 16 19 C 0.16 6.56 3.25 44.97 0.15 6.70 16 20 H 0.02 0.85 7.62 -2.39 -0.02 0.84 16 21 C -0.13 -4.59 7.94 71.98 0.57 -4.02 16 22 N -0.60 -29.53 2.73 -649.80 -1.77 -31.31 16 23 C -0.25 -13.37 8.71 84.03 0.73 -12.64 16 24 H 0.07 3.72 6.18 -2.91 -0.02 3.70 16 25 C -0.05 -2.89 4.93 84.86 0.42 -2.47 16 26 N -0.92 -54.12 9.79 21.65 0.21 -53.91 16 27 Si 0.95 45.68 29.59 68.60 2.03 47.71 16 28 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 29 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 30 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 31 H 0.03 1.91 6.90 -2.39 -0.02 1.89 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.81 7.07 -2.39 -0.02 1.79 16 34 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.07 2.76 5.54 -2.39 -0.01 2.75 16 36 H 0.04 0.92 8.02 -2.39 -0.02 0.90 16 37 H 0.10 2.08 8.08 -2.39 -0.02 2.06 16 38 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.16 1.74 6.30 -2.91 -0.02 1.73 16 40 H 0.13 0.81 7.66 -2.39 -0.02 0.79 16 41 H 0.12 1.02 7.66 -2.39 -0.02 1.01 16 42 H 0.42 -0.80 8.83 -92.71 -0.82 -1.62 16 43 H 0.41 2.13 8.93 -92.71 -0.83 1.31 16 44 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 45 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 46 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.09 2.49 8.11 -2.39 -0.02 2.47 16 48 H 0.04 1.65 7.52 -2.39 -0.02 1.64 16 49 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.04 1.67 7.59 -2.39 -0.02 1.65 16 51 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -77.79 398.08 -0.18 -77.97 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -0.69 Total: 13.35 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.84 Total: -0.15 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -6.93 Total: -112.94 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.43 Total: -25.94 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -77.79 -0.18 -77.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.196 kcal (2) G-P(sol) polarization free energy of solvation -77.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds