Wall clock time and date at job start Wed Apr 1 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.78328 * 2 1 4 4 C 1.54323 * 110.72190 * 123.24106 * 2 1 3 5 5 N 1.47028 * 107.26782 * 140.55243 * 4 2 1 6 6 C 1.34780 * 125.64626 * 181.02338 * 5 4 2 7 7 O 1.21494 * 119.99718 * 0.02562 * 6 5 4 8 8 C 1.48327 * 120.00298 * 180.02562 * 6 5 4 9 9 N 1.31504 * 127.14928 * 0.02562 * 8 6 5 10 10 O 1.21435 * 111.51777 * 179.97438 * 9 8 6 11 11 C 1.33180 * 111.57594 * 359.95868 * 10 9 8 12 12 C 1.35378 * 106.63659 * 0.07194 * 11 10 9 13 13 C 1.50064 * 124.94149 * 179.79949 * 12 11 10 14 14 C 1.53550 * 108.22876 * 343.89487 * 13 12 11 15 15 C 1.52999 * 109.46787 * 289.18251 * 14 13 12 16 16 C 1.53006 * 109.45378 * 169.20201 * 14 13 12 17 17 C 1.53115 * 109.51150 * 49.19805 * 14 13 12 18 18 C 1.50603 * 129.60354 * 180.09471 * 11 10 9 19 19 C 1.47420 * 108.70445 * 1.29007 * 5 4 2 20 20 C 1.55124 * 104.72189 * 335.55140 * 19 5 4 21 21 H 1.08997 * 111.19518 * 279.18868 * 20 19 5 22 22 N 1.46507 * 110.93812 * 155.29113 * 20 19 5 23 23 C 1.36939 * 120.00085 * 92.95776 * 22 20 19 24 24 H 1.08002 * 119.99699 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99958 * 180.02562 * 23 22 20 26 26 N 1.31614 * 119.99512 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99885 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47247 * 89.99892 * 27 25 23 29 29 H 1.48500 * 109.46703 * 209.99998 * 27 25 23 30 30 H 1.48498 * 109.46982 * 329.99659 * 27 25 23 31 31 H 1.09008 * 109.46900 * 298.21075 * 1 2 3 32 32 H 1.09004 * 109.47218 * 58.20856 * 1 2 3 33 33 H 1.08993 * 109.47367 * 178.21195 * 1 2 3 34 34 H 1.08993 * 109.88131 * 21.14166 * 4 2 1 35 35 H 1.08998 * 109.88632 * 259.97062 * 4 2 1 36 36 H 1.08993 * 109.70562 * 103.58656 * 13 12 11 37 37 H 1.08993 * 109.71104 * 224.21861 * 13 12 11 38 38 H 1.09006 * 109.46498 * 180.02562 * 15 14 13 39 39 H 1.08997 * 109.47021 * 300.04206 * 15 14 13 40 40 H 1.08993 * 109.47121 * 60.04561 * 15 14 13 41 41 H 1.09003 * 109.47104 * 299.96501 * 16 14 13 42 42 H 1.08998 * 109.46730 * 59.96613 * 16 14 13 43 43 H 1.08999 * 109.47027 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.42555 * 170.07084 * 17 14 13 45 45 H 1.08993 * 109.38479 * 50.19947 * 17 14 13 46 46 H 1.08994 * 109.69333 * 282.96066 * 18 11 10 47 47 H 1.09001 * 109.69388 * 43.55570 * 18 11 10 48 48 H 1.08999 * 110.36686 * 94.48415 * 19 5 4 49 49 H 1.09004 * 110.36740 * 216.80204 * 19 5 4 50 50 H 0.96995 * 119.99931 * 272.95598 * 22 20 19 51 51 H 0.97003 * 119.99403 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 3.2445 -1.5508 0.7388 6 6 3.9923 -2.3837 1.4895 7 8 3.7187 -2.5569 2.6605 8 6 5.1493 -3.0890 0.8860 9 7 5.5695 -3.0060 -0.3573 10 8 6.5442 -3.7054 -0.5457 11 6 6.9043 -4.3521 0.5615 12 6 6.0273 -3.9872 1.5261 13 6 6.0532 -4.4812 2.9428 14 6 6.9444 -5.7304 2.9997 15 6 6.2382 -6.8929 2.2993 16 6 7.2102 -6.1007 4.4603 17 6 8.2737 -5.4426 2.2963 18 6 8.0425 -5.3126 0.7851 19 6 3.4665 -1.2455 -0.6863 20 6 2.0789 -0.7954 -1.2138 21 1 1.4451 -1.6534 -1.4376 22 7 2.2205 0.0696 -2.3878 23 6 2.1856 -0.4716 -3.6453 24 1 2.0540 -1.5362 -3.7715 25 6 2.3203 0.3478 -4.7576 26 7 2.2872 -0.1725 -5.9660 27 14 2.5500 2.1887 -4.5391 28 1 3.9991 2.4989 -4.4438 29 1 1.9665 2.9019 -5.7036 30 1 1.8668 2.6287 -3.2961 31 1 -0.3633 0.4858 0.9057 32 1 -0.3634 0.5414 -0.8735 33 1 -0.3634 -1.0271 -0.0321 34 1 1.3130 -1.4759 1.5774 35 1 2.3741 -0.1025 1.9977 36 1 6.4612 -3.7084 3.5942 37 1 5.0427 -4.7359 3.2619 38 1 6.8707 -7.7798 2.3401 39 1 5.2919 -7.0978 2.7999 40 1 6.0491 -6.6293 1.2587 41 1 7.7136 -5.2726 4.9593 42 1 6.2639 -6.3055 4.9610 43 1 7.8424 -6.9877 4.5009 44 1 8.9694 -6.2597 2.4877 45 1 8.6923 -4.5125 2.6804 46 1 7.7885 -6.2867 0.3672 47 1 8.9446 -4.9309 0.3070 48 1 4.1946 -0.4415 -0.7931 49 1 3.8030 -2.1361 -1.2171 50 1 2.3390 1.0255 -2.2744 51 1 2.3810 0.4002 -6.7433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054927708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:58 Heat of formation + Delta-G solvation = 14.020411 kcal Electronic energy + Delta-G solvation = -31680.301105 eV Core-core repulsion = 27582.062296 eV Total energy + Delta-G solvation = -4098.238809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -46.24601 -41.28122 -40.00189 -39.11557 -36.08707 -35.21248 -34.08867 -33.75973 -32.93085 -31.35710 -29.62115 -28.55279 -28.16554 -27.77660 -25.88592 -25.07584 -24.43450 -23.03394 -22.63791 -21.66517 -20.74275 -19.60229 -19.29936 -18.96887 -18.28631 -17.82457 -17.44073 -16.81474 -16.42046 -15.98915 -15.78079 -15.52995 -15.35261 -15.16244 -14.87504 -14.63178 -14.52590 -14.38690 -14.27313 -14.15719 -14.01689 -13.60841 -13.28117 -13.09399 -13.06261 -12.98978 -12.83548 -12.67211 -12.55552 -12.32678 -12.19658 -12.18445 -11.99606 -11.86105 -11.73626 -11.63177 -11.54423 -11.48602 -11.26194 -11.20076 -11.01646 -10.15098 -9.91501 -9.40169 -8.04951 -5.41322 -0.02800 0.59079 1.36920 1.40628 1.47285 1.56222 1.90899 1.95194 2.46157 2.72521 3.21142 3.23846 3.47642 3.55281 3.59733 3.75760 3.79821 3.90258 3.93128 3.97827 4.08290 4.15753 4.20898 4.30623 4.38540 4.43975 4.52008 4.58230 4.62663 4.71867 4.77651 4.79854 4.83571 4.88875 4.90833 4.97315 5.00378 5.03895 5.06249 5.06919 5.13672 5.14993 5.22632 5.23132 5.38385 5.39341 5.47368 5.53366 5.72278 6.13255 6.18226 6.67418 7.00940 7.02286 7.74167 7.95186 9.16138 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015046 B = 0.002867 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.505759 B = 9763.595843 C =11074.602619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 H 0.092 0.908 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.606 3.394 7 O -0.548 6.548 8 C -0.042 4.042 9 N -0.353 5.353 10 O 0.125 5.875 11 C -0.025 4.025 12 C -0.163 4.163 13 C -0.029 4.029 14 C -0.064 4.064 15 C -0.145 4.145 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.037 4.037 19 C 0.087 3.913 20 C 0.176 3.824 21 H 0.063 0.937 22 N -0.732 5.732 23 C -0.235 4.235 24 H 0.055 0.945 25 C -0.057 4.057 26 N -0.980 5.980 27 Si 0.953 3.047 28 H -0.281 1.281 29 H -0.295 1.295 30 H -0.245 1.245 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.370 0.630 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.952 -11.016 22.689 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 H 0.111 0.889 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.393 3.607 7 O -0.426 6.426 8 C -0.198 4.198 9 N -0.055 5.055 10 O 0.051 5.949 11 C -0.090 4.090 12 C -0.168 4.168 13 C -0.067 4.067 14 C -0.064 4.064 15 C -0.202 4.202 16 C -0.194 4.194 17 C -0.141 4.141 18 C -0.074 4.074 19 C -0.039 4.039 20 C 0.066 3.934 21 H 0.081 0.919 22 N -0.374 5.374 23 C -0.366 4.366 24 H 0.073 0.927 25 C -0.249 4.249 26 N -0.630 5.630 27 Si 0.780 3.220 28 H -0.208 1.208 29 H -0.222 1.222 30 H -0.170 1.170 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.090 0.910 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.204 0.796 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.305 -10.570 22.132 27.007 hybrid contribution -0.099 1.010 -0.256 1.047 sum 11.205 -9.561 21.876 26.373 Atomic orbital electron populations 1.21651 0.91974 1.02424 1.02753 1.22514 0.98036 0.99450 0.92441 0.88926 1.22184 0.86507 0.94636 0.97033 1.48369 1.29826 1.42900 1.12206 1.16695 0.80667 0.78569 0.84785 1.90722 1.70976 1.65241 1.15694 1.23049 1.01187 1.03928 0.91681 1.74843 1.00498 1.12107 1.18094 1.84703 1.33056 1.42189 1.34907 1.24967 1.00893 0.99078 0.84050 1.20873 0.95501 0.99941 1.00501 1.20118 1.01074 0.97584 0.87914 1.20730 0.94909 0.93356 0.97417 1.21970 1.00492 0.98079 0.99700 1.21814 1.02002 1.02339 0.93223 1.21773 0.96710 1.04212 0.91383 1.20642 0.92078 0.95570 0.99121 1.23297 1.00813 1.00806 0.78952 1.21511 0.92298 0.93534 0.86088 0.91859 1.42492 1.88025 1.05597 1.01279 1.18957 1.41167 0.93241 0.83192 0.92683 1.25480 1.02146 1.02722 0.94565 1.69883 1.58673 1.36405 0.98044 0.85449 0.78102 0.80534 0.77946 1.20776 1.22202 1.16955 0.89969 0.92685 0.92495 0.90105 0.89882 0.90264 0.91354 0.89953 0.93489 0.93795 0.92124 0.92990 0.90390 0.86827 0.91032 0.86692 0.86647 0.92082 0.91323 0.79566 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.13 71.98 0.66 -2.62 16 2 C -0.10 -3.03 3.19 -9.61 -0.03 -3.06 16 3 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 4 C 0.12 3.33 6.46 86.73 0.56 3.89 16 5 N -0.60 -20.51 3.32 -814.22 -2.71 -23.22 16 6 C 0.61 21.56 7.88 86.93 0.68 22.25 16 7 O -0.55 -20.42 16.42 -3.70 -0.06 -20.48 16 8 C -0.04 -1.41 7.00 42.55 0.30 -1.12 16 9 N -0.35 -12.33 9.36 -48.94 -0.46 -12.78 16 10 O 0.13 3.66 11.18 78.77 0.88 4.54 16 11 C -0.03 -0.56 6.65 24.99 0.17 -0.40 16 12 C -0.16 -4.26 5.59 -20.05 -0.11 -4.37 16 13 C -0.03 -0.62 4.41 29.83 0.13 -0.49 16 14 C -0.06 -0.82 0.77 -51.96 -0.04 -0.86 16 15 C -0.15 -1.92 7.73 71.98 0.56 -1.37 16 16 C -0.14 -1.33 8.44 71.98 0.61 -0.72 16 17 C -0.10 -0.92 4.83 30.78 0.15 -0.77 16 18 C -0.04 -0.41 5.66 29.96 0.17 -0.24 16 19 C 0.09 3.30 5.89 86.93 0.51 3.81 16 20 C 0.18 6.72 3.17 46.46 0.15 6.86 16 21 H 0.06 2.59 7.99 -2.39 -0.02 2.57 16 22 N -0.73 -33.32 5.05 -316.01 -1.59 -34.92 16 23 C -0.23 -13.23 10.44 84.03 0.88 -12.35 16 24 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 25 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 26 N -0.98 -62.62 13.97 21.65 0.30 -62.32 16 27 Si 0.95 44.73 27.74 68.60 1.90 46.63 16 28 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 29 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 30 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.08 2.15 7.82 -2.39 -0.02 2.14 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 37 H 0.07 1.70 7.81 -2.39 -0.02 1.68 16 38 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.04 0.71 5.66 -2.39 -0.01 0.69 16 41 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.11 0.39 8.11 -2.39 -0.02 0.37 16 45 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 46 H 0.12 0.96 6.99 -2.39 -0.02 0.95 16 47 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.07 2.89 6.23 -2.39 -0.01 2.87 16 50 H 0.37 15.96 5.62 -92.71 -0.52 15.44 16 51 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -73.91 396.89 4.42 -69.49 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.35 Total: 27.46 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.80 Total: 5.59 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -4.46 Total: -133.24 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.82 Total: -15.94 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -73.91 4.42 -69.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054927708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.512 kcal (2) G-P(sol) polarization free energy of solvation -73.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds