Wall clock time and date at job start Wed Apr 1 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 C 1.53000 * 109.47144 * 174.99958 * 4 2 1 6 6 H 1.08997 * 109.47209 * 304.99742 * 5 4 2 7 7 C 1.53002 * 109.47049 * 184.99671 * 5 4 2 8 8 N 1.46896 * 109.47493 * 64.99763 * 5 4 2 9 9 C 1.46894 * 111.00305 * 204.99952 * 8 5 4 10 10 C 1.50697 * 109.47069 * 179.97438 * 9 8 5 11 11 O 1.21297 * 120.00417 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00340 * 180.02562 * 12 10 9 14 14 H 1.07992 * 119.99799 * 0.02562 * 13 12 10 15 15 C 1.38947 * 119.99572 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00666 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99552 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47498 * 60.00399 * 17 15 13 19 19 H 1.48510 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47422 * 299.99912 * 17 15 13 21 21 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 22 22 C 1.34784 * 119.99971 * 275.00026 * 21 2 1 23 23 O 1.21274 * 119.99897 * 359.72827 * 22 21 2 24 24 C 1.50695 * 119.99635 * 179.97438 * 22 21 2 25 25 C 1.50293 * 109.47150 * 300.00951 * 24 22 21 26 26 C 1.32260 * 121.59290 * 303.37699 * 25 24 22 27 27 C 1.45203 * 123.04159 * 0.93152 * 26 25 24 28 28 C 1.32943 * 125.19920 * 319.61220 * 27 26 25 29 29 C 1.45202 * 125.19605 * 359.97438 * 28 27 26 30 30 C 1.32292 * 123.02512 * 40.42671 * 29 28 27 31 31 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 32 32 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 34 34 H 1.09003 * 109.47330 * 294.99933 * 4 2 1 35 35 H 1.08999 * 109.47417 * 54.99517 * 4 2 1 36 36 H 1.09003 * 109.47076 * 60.00481 * 7 5 4 37 37 H 1.09006 * 109.47201 * 179.97438 * 7 5 4 38 38 H 1.08992 * 109.47496 * 299.99738 * 7 5 4 39 39 H 1.00902 * 111.00058 * 81.04293 * 8 5 4 40 40 H 1.08999 * 109.47595 * 299.99909 * 9 8 5 41 41 H 1.09005 * 109.47162 * 60.00109 * 9 8 5 42 42 H 0.97004 * 119.99549 * 0.02562 * 12 10 9 43 43 H 0.97004 * 120.00222 * 180.02562 * 16 15 13 44 44 H 0.96999 * 119.99984 * 94.99874 * 21 2 1 45 45 H 1.08999 * 109.46711 * 60.00128 * 24 22 21 46 46 H 1.07995 * 119.20183 * 123.31618 * 25 24 22 47 47 H 1.08003 * 118.47114 * 180.93563 * 26 25 24 48 48 H 1.07996 * 117.40183 * 139.59354 * 27 26 25 49 49 H 1.08000 * 117.40134 * 179.97438 * 28 27 26 50 50 H 1.08006 * 118.48507 * 220.41105 * 29 28 27 51 51 H 1.08000 * 119.20021 * 178.99778 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2249 -2.6240 8 7 4.1553 -1.3360 -0.1794 9 6 5.4834 -0.8023 0.1512 10 6 6.0559 -1.5665 1.3170 11 8 5.4204 -2.4674 1.8226 12 7 7.2746 -1.2495 1.7974 13 6 7.7957 -1.9450 2.8578 14 1 7.2298 -2.7472 3.3078 15 6 9.0520 -1.6178 3.3532 16 7 9.7404 -0.6414 2.8059 17 14 9.7623 -2.5659 4.7975 18 1 9.8818 -4.0015 4.4366 19 1 11.1046 -2.0258 5.1322 20 1 8.8651 -2.4239 5.9723 21 7 2.0184 -0.6906 1.1962 22 6 2.1471 -0.0182 2.3572 23 8 1.8633 1.1597 2.4104 24 6 2.6489 -0.7287 3.5877 25 6 1.7212 -1.8620 3.9251 26 6 0.4306 -1.6622 4.1341 27 6 -0.1940 -0.3549 4.0374 28 6 0.3360 0.7820 4.4777 29 6 1.6277 0.9062 5.1292 30 6 2.6998 0.2371 4.7382 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.7516 -1.7714 -1.2056 35 1 1.6053 -0.2617 -2.1369 36 1 3.6264 -0.6885 -3.4657 37 1 5.1508 -1.1476 -2.6702 38 1 3.7723 -2.2740 -2.6699 39 1 4.1998 -2.3267 -0.3655 40 1 6.1420 -0.9071 -0.7110 41 1 5.3959 0.2515 0.4157 42 1 7.7831 -0.5292 1.3929 43 1 10.6175 -0.4132 3.1516 44 1 2.2491 -1.6317 1.1526 45 1 3.6480 -1.1212 3.3985 46 1 2.1179 -2.8638 3.9978 47 1 -0.1872 -2.5107 4.3885 48 1 -1.1663 -0.3019 3.5704 49 1 -0.2400 1.6851 4.3398 50 1 1.7173 1.5760 5.9718 51 1 3.6343 0.3890 5.2579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134476435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:10 Heat of formation + Delta-G solvation = -42.228253 kcal Electronic energy + Delta-G solvation = -32344.450461 eV Core-core repulsion = 28243.772526 eV Total energy + Delta-G solvation = -4100.677934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.31171 -40.14628 -38.90596 -37.73172 -36.05642 -35.64258 -33.64919 -33.22088 -33.15016 -32.30722 -30.93466 -27.92478 -27.58446 -27.24316 -25.62104 -24.44564 -23.00480 -21.73830 -21.38073 -20.93693 -19.85515 -19.53919 -18.38479 -18.06028 -17.72489 -17.25624 -17.05225 -16.62759 -16.32857 -16.01457 -15.68278 -15.48251 -15.35347 -15.10250 -14.87601 -14.66508 -14.31597 -14.21701 -13.80493 -13.54748 -13.48007 -13.36189 -13.29685 -13.06955 -13.01359 -12.90781 -12.77812 -12.71462 -12.53585 -12.39212 -12.16712 -12.11609 -11.76995 -11.66958 -11.56860 -11.43988 -11.08428 -10.68160 -10.25008 -10.13788 -9.96255 -9.74548 -9.10088 -9.03988 -8.43049 -5.90683 0.38128 1.15216 1.40365 1.42212 1.52365 1.94002 2.11039 2.30213 2.35064 2.65087 2.99970 3.25236 3.60806 3.77437 3.88530 3.99413 4.09169 4.15048 4.21962 4.26364 4.29789 4.36171 4.42279 4.48462 4.52575 4.56304 4.60182 4.62592 4.68785 4.82918 4.84085 4.93412 5.00149 5.06378 5.06730 5.08695 5.11836 5.31630 5.32196 5.44223 5.46310 5.59367 5.67661 5.85268 5.90026 5.93804 5.98198 5.99715 6.16772 6.54501 6.63688 6.96179 7.16653 7.61656 7.63802 8.15379 8.74443 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009029 B = 0.004102 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.536198 B = 6823.481892 C = 9109.359645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.150 3.850 3 H 0.055 0.945 4 C -0.104 4.104 5 C 0.082 3.918 6 H 0.067 0.933 7 C -0.175 4.175 8 N -0.660 5.660 9 C 0.068 3.932 10 C 0.444 3.556 11 O -0.605 6.605 12 N -0.578 5.578 13 C -0.324 4.324 14 H 0.083 0.917 15 C -0.015 4.015 16 N -0.925 5.925 17 Si 0.988 3.012 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.273 1.273 21 N -0.680 5.680 22 C 0.535 3.465 23 O -0.580 6.580 24 C -0.051 4.051 25 C -0.137 4.137 26 C -0.115 4.115 27 C -0.144 4.144 28 C -0.086 4.086 29 C -0.113 4.113 30 C -0.140 4.140 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.346 0.654 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.392 0.608 43 H 0.275 0.725 44 H 0.408 0.592 45 H 0.085 0.915 46 H 0.125 0.875 47 H 0.140 0.860 48 H 0.123 0.877 49 H 0.114 0.886 50 H 0.128 0.872 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.341 0.163 -7.336 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.073 0.927 4 C -0.142 4.142 5 C -0.027 4.027 6 H 0.085 0.915 7 C -0.234 4.234 8 N -0.292 5.292 9 C -0.065 4.065 10 C 0.232 3.768 11 O -0.491 6.491 12 N -0.216 5.216 13 C -0.454 4.454 14 H 0.101 0.899 15 C -0.214 4.214 16 N -0.566 5.566 17 Si 0.812 3.188 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.198 1.198 21 N -0.329 5.329 22 C 0.322 3.678 23 O -0.461 6.461 24 C -0.072 4.072 25 C -0.155 4.155 26 C -0.133 4.133 27 C -0.162 4.162 28 C -0.104 4.104 29 C -0.131 4.131 30 C -0.159 4.159 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.165 0.835 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.225 0.775 43 H 0.084 0.916 44 H 0.245 0.755 45 H 0.104 0.896 46 H 0.143 0.857 47 H 0.158 0.842 48 H 0.141 0.859 49 H 0.132 0.868 50 H 0.145 0.855 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.110 0.836 -6.487 20.198 hybrid contribution 2.058 -0.515 0.001 2.121 sum -17.052 0.322 -6.485 18.247 Atomic orbital electron populations 1.22100 0.94831 1.02318 1.01870 1.20826 0.93735 0.96120 0.84783 0.92709 1.21878 0.93471 1.01921 0.96923 1.21684 0.95103 0.97823 0.88107 0.91458 1.22428 1.00875 1.01872 0.98226 1.60237 1.20386 1.08231 1.40370 1.21441 0.91409 0.98577 0.95059 1.20707 0.82025 0.86638 0.87471 1.90468 1.60857 1.34510 1.63224 1.41965 1.16121 1.33110 1.30354 1.19610 1.00822 1.15482 1.09473 0.89857 1.25989 0.96396 0.97669 1.01367 1.69679 1.13810 1.29998 1.43145 0.85054 0.77383 0.78347 0.77987 1.19500 1.19990 1.19787 1.45726 1.64854 1.14358 1.07978 1.20141 0.76379 0.86445 0.84872 1.90593 1.52691 1.17143 1.85699 1.19136 1.00400 0.94927 0.92779 1.22940 0.93342 0.97598 1.01621 1.21274 0.94986 0.97204 0.99836 1.21145 1.01314 0.92246 1.01460 1.21086 0.94911 0.97718 0.96681 1.21169 0.93111 0.99113 0.99664 1.22884 0.98671 0.95962 0.98359 0.90299 0.91695 0.94465 0.90195 0.87851 0.90404 0.93715 0.91759 0.83486 0.92364 0.90129 0.77533 0.91573 0.75543 0.89644 0.85687 0.84216 0.85924 0.86806 0.85471 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.48 71.98 0.68 -2.20 16 2 C 0.15 3.33 2.58 44.99 0.12 3.45 16 3 H 0.05 1.51 7.57 -2.38 -0.02 1.49 16 4 C -0.10 -1.68 4.54 30.59 0.14 -1.54 16 5 C 0.08 1.64 2.59 44.92 0.12 1.75 16 6 H 0.07 1.49 7.80 -2.39 -0.02 1.48 16 7 C -0.18 -2.86 9.16 71.98 0.66 -2.20 16 8 N -0.66 -17.58 3.48 -495.60 -1.72 -19.30 16 9 C 0.07 2.24 5.96 85.56 0.51 2.75 16 10 C 0.44 19.83 7.82 87.66 0.69 20.52 16 11 O -0.61 -29.81 15.78 -3.08 -0.05 -29.85 16 12 N -0.58 -29.01 5.29 -306.99 -1.62 -30.63 16 13 C -0.32 -17.95 9.68 84.04 0.81 -17.13 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.02 -0.80 5.50 84.93 0.47 -0.33 16 16 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 17 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 19 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 N -0.68 -18.34 3.70 -442.54 -1.64 -19.97 16 22 C 0.54 17.77 5.44 87.65 0.48 18.25 16 23 O -0.58 -22.06 13.35 -3.01 -0.04 -22.10 16 24 C -0.05 -1.73 2.89 -13.29 -0.04 -1.77 16 25 C -0.14 -3.84 8.89 24.51 0.22 -3.62 16 26 C -0.12 -2.78 9.58 23.01 0.22 -2.56 16 27 C -0.14 -3.58 8.53 22.89 0.20 -3.39 16 28 C -0.09 -2.38 7.36 22.89 0.17 -2.21 16 29 C -0.11 -3.37 9.09 22.99 0.21 -3.16 16 30 C -0.14 -4.72 8.77 24.50 0.21 -4.51 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.84 7.45 -2.38 -0.02 0.82 16 38 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 39 H 0.35 9.40 8.17 -89.69 -0.73 8.67 16 40 H 0.06 1.74 7.44 -2.39 -0.02 1.72 16 41 H 0.08 2.72 8.06 -2.38 -0.02 2.70 16 42 H 0.39 19.27 7.90 -92.71 -0.73 18.54 16 43 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.41 11.00 7.48 -92.71 -0.69 10.30 16 45 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 46 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 47 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 48 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 49 H 0.11 2.92 8.06 -2.91 -0.02 2.90 16 50 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 51 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -66.31 414.18 1.88 -64.43 By element: Atomic # 1 Polarization: 61.76 SS G_CDS: -1.22 Total: 60.55 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.85 Total: 2.09 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -4.70 Total: -119.98 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.09 Total: -51.95 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -66.31 1.88 -64.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134476435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.202 kcal (2) G-P(sol) polarization free energy of solvation -66.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds